Wall clock time and date at job start Tue Mar 31 2020 22:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86799 * 119.99911 * 2 1 4 4 H 1.48491 * 109.47216 * 270.00005 * 3 2 1 5 5 H 1.48499 * 109.47331 * 30.00218 * 3 2 1 6 6 H 1.48506 * 109.47086 * 149.99928 * 3 2 1 7 7 C 1.40246 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 197.86306 * 7 2 1 9 9 C 1.41086 * 120.00000 * 17.86636 * 7 2 1 10 10 C 1.40898 * 120.09675 * 204.63831 * 9 7 2 11 11 C 1.36295 * 119.89981 * 180.02562 * 10 9 7 12 12 C 1.40074 * 120.10000 * 359.97438 * 11 10 9 13 13 C 1.47511 * 119.89928 * 179.97438 * 12 11 10 14 14 O 1.21508 * 119.99898 * 0.02562 * 13 12 11 15 15 O 1.34778 * 119.99961 * 180.02562 * 13 12 11 16 16 C 1.45193 * 117.00037 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46932 * 179.97438 * 16 15 13 18 18 N 1.46507 * 109.46729 * 65.00089 * 17 16 15 19 19 C 1.47062 * 126.29826 * 274.68475 * 18 17 16 20 20 C 1.54316 * 109.96762 * 150.91195 * 19 18 17 21 21 C 1.55600 * 104.19377 * 45.50373 * 20 19 18 22 22 S 1.66999 * 126.30208 * 95.00219 * 18 17 16 23 23 O 1.42099 * 105.13253 * 298.88694 * 22 18 17 24 24 O 1.42097 * 105.13277 * 68.56003 * 22 18 17 25 25 C 1.40058 * 120.19762 * 0.25870 * 12 11 10 26 26 C 1.36300 * 120.10344 * 359.48065 * 25 12 11 27 27 H 0.96999 * 120.00195 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.05443 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.95654 * 179.97438 * 11 10 9 30 30 H 1.09003 * 109.46988 * 299.99649 * 16 15 13 31 31 H 1.09001 * 109.47232 * 59.99923 * 16 15 13 32 32 H 1.08997 * 109.47093 * 184.99433 * 17 16 15 33 33 H 1.09000 * 109.47161 * 305.00058 * 17 16 15 34 34 H 1.09000 * 109.35401 * 271.18665 * 19 18 17 35 35 H 1.08998 * 109.35870 * 30.83060 * 19 18 17 36 36 H 1.09007 * 110.64844 * 286.76883 * 20 19 18 37 37 H 1.08994 * 110.38762 * 164.11433 * 20 19 18 38 38 H 1.09003 * 111.16983 * 204.06401 * 21 20 19 39 39 H 1.08999 * 111.16881 * 79.79350 * 21 20 19 40 40 H 1.08002 * 119.94987 * 179.74380 * 25 12 11 41 41 H 1.08000 * 120.05838 * 180.23152 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0464 -1.4000 5 1 1.4378 2.6527 0.7001 6 1 3.5379 1.4402 0.7001 7 6 2.0075 -1.2146 -0.0005 8 1 3.0485 -1.2373 0.2864 9 6 1.3531 -2.4068 -0.3759 10 6 1.8268 -3.6495 0.0894 11 6 1.1918 -4.7987 -0.2761 12 6 0.0696 -4.7457 -1.1128 13 6 -0.6139 -5.9923 -1.5061 14 8 -0.2036 -7.0630 -1.1041 15 8 -1.6935 -5.9437 -2.3114 16 6 -2.3158 -7.2092 -2.6569 17 6 -3.5166 -6.9545 -3.5702 18 7 -3.0530 -6.3910 -4.8406 19 6 -2.7929 -4.9707 -5.1197 20 6 -1.6979 -4.8376 -6.1988 21 6 -2.1079 -5.8705 -7.2879 22 16 -2.7296 -7.2423 -6.2405 23 8 -1.6845 -8.1409 -5.8951 24 8 -3.9945 -7.7042 -6.6943 25 6 -0.4019 -3.5130 -1.5817 26 6 0.2237 -2.3583 -1.2170 27 1 -0.4850 0.8400 0.0004 28 1 2.6922 -3.6914 0.7342 29 1 1.5543 -5.7518 0.0797 30 1 -1.5929 -7.8403 -3.1740 31 1 -2.6505 -7.7095 -1.7482 32 1 -4.0362 -7.8942 -3.7577 33 1 -4.1973 -6.2528 -3.0883 34 1 -3.7099 -4.4979 -5.4714 35 1 -2.4612 -4.4778 -4.2059 36 1 -0.7198 -5.0862 -5.7867 37 1 -1.6930 -3.8292 -6.6124 38 1 -1.2462 -6.1845 -7.8769 39 1 -2.8968 -5.4754 -7.9280 40 1 -1.2650 -3.4771 -2.2299 41 1 -0.1427 -1.4079 -1.5760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758680575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:52 Heat of formation + Delta-G solvation = -155.802837 kcal Electronic energy + Delta-G solvation = -27114.033597 eV Core-core repulsion = 23084.994719 eV Total energy + Delta-G solvation = -4029.038878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20842 -39.28667 -38.38734 -38.11208 -37.19860 -36.91903 -35.72490 -34.44511 -32.19809 -31.34859 -30.31984 -27.96662 -26.95341 -24.68866 -23.51138 -22.89607 -22.75982 -21.64477 -19.93691 -19.38193 -18.68045 -18.28827 -17.90800 -17.73163 -17.23133 -16.94771 -16.74218 -15.86502 -15.76414 -15.47457 -15.23755 -15.13952 -14.69831 -14.45254 -14.30074 -14.10275 -13.93643 -13.73605 -13.67271 -13.28620 -13.21020 -13.14857 -13.08573 -12.85828 -12.66698 -12.48801 -12.39182 -12.27683 -12.07236 -11.79400 -11.56269 -11.41312 -11.36503 -11.22144 -11.10243 -9.99528 -9.60206 -9.50268 -8.82674 -6.52825 -0.77263 0.27884 1.16192 1.39135 1.43808 1.49015 1.55848 1.92418 1.93307 2.17154 2.59968 2.70446 3.03279 3.35681 3.61415 3.65494 3.87936 3.92543 4.06381 4.14636 4.26064 4.37003 4.37890 4.43376 4.53653 4.60996 4.70615 4.86257 4.92260 4.97133 5.00509 5.08290 5.13039 5.15247 5.26551 5.49484 5.57863 5.58664 5.85079 5.94530 5.99048 6.18239 6.51777 6.73101 6.84946 7.07033 8.11913 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.002838 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.395003 B = 9863.083336 C =10862.088740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.039 3.961 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.461 4.461 8 H 0.089 0.911 9 C 0.106 3.894 10 C -0.252 4.252 11 C -0.027 4.027 12 C -0.289 4.289 13 C 0.516 3.484 14 O -0.577 6.577 15 O -0.345 6.345 16 C 0.035 3.965 17 C 0.164 3.836 18 N -0.992 5.992 19 C 0.069 3.931 20 C -0.128 4.128 21 C -0.557 4.557 22 S 2.553 3.447 23 O -1.007 7.007 24 O -0.994 6.994 25 C -0.033 4.033 26 C -0.200 4.200 27 H 0.300 0.700 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.174 0.826 40 H 0.126 0.874 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.541 -0.645 -13.120 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.487 4.487 8 H 0.107 0.893 9 C 0.102 3.898 10 C -0.271 4.271 11 C -0.045 4.045 12 C -0.292 4.292 13 C 0.368 3.632 14 O -0.473 6.473 15 O -0.262 6.262 16 C -0.041 4.041 17 C 0.039 3.961 18 N -0.834 5.834 19 C -0.057 4.057 20 C -0.167 4.167 21 C -0.692 4.692 22 S 2.654 3.346 23 O -0.996 6.996 24 O -0.984 6.984 25 C -0.052 4.052 26 C -0.219 4.219 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.192 0.808 40 H 0.144 0.856 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.885 -1.893 -13.069 15.381 hybrid contribution 0.664 0.587 0.461 0.999 sum -7.221 -1.306 -12.608 14.588 Atomic orbital electron populations 1.69749 1.09278 1.31976 1.30093 1.26961 0.95548 1.04885 0.90785 0.85078 0.79055 0.75039 0.79957 1.18129 1.18949 1.18157 1.20224 0.98883 0.92106 1.37510 0.89282 1.18185 0.91134 0.92848 0.87619 1.20836 1.05260 0.92480 1.08528 1.20495 0.92944 0.97433 0.93656 1.18449 1.04604 0.90263 1.15861 1.21440 0.77764 0.89316 0.74659 1.90687 1.66960 1.32937 1.56730 1.86522 1.41821 1.35878 1.61968 1.23857 0.96220 0.84099 0.99946 1.21235 0.92843 1.01118 0.80864 1.57091 1.83369 1.17782 1.25114 1.22418 0.99897 0.82045 1.01295 1.22819 0.99035 1.02689 0.92207 1.30647 1.14468 1.13923 1.10203 1.06721 0.74432 0.76592 0.76826 1.93574 1.59221 1.64468 1.82368 1.93559 1.42578 1.80750 1.81522 1.20765 0.97266 0.90979 0.96152 1.21023 1.00534 0.97371 1.02986 0.88862 0.87309 0.87763 0.92746 0.90022 0.86692 0.86803 0.87899 0.89007 0.90097 0.83941 0.82159 0.80834 0.85638 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.48 10.95 21.88 0.24 -35.24 16 2 C 0.04 1.69 5.14 85.36 0.44 2.13 16 3 Si 0.99 32.46 29.60 68.60 2.03 34.49 16 4 H -0.26 -8.14 7.11 99.48 0.71 -7.43 16 5 H -0.27 -8.26 7.11 99.48 0.71 -7.55 16 6 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 7 C -0.46 -22.00 9.04 23.46 0.21 -21.78 16 8 H 0.09 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.11 5.23 5.58 -21.28 -0.12 5.11 16 10 C -0.25 -12.01 9.73 22.47 0.22 -11.79 16 11 C -0.03 -1.25 9.52 22.26 0.21 -1.04 16 12 C -0.29 -13.22 5.89 -19.95 -0.12 -13.34 16 13 C 0.52 22.42 7.89 70.27 0.55 22.98 16 14 O -0.58 -27.68 16.11 19.81 0.32 -27.36 16 15 O -0.35 -12.20 8.44 -56.89 -0.48 -12.68 16 16 C 0.03 1.03 5.82 71.98 0.42 1.45 16 17 C 0.16 3.47 6.75 86.38 0.58 4.06 16 18 N -0.99 -20.79 3.27 -512.03 -1.68 -22.46 16 19 C 0.07 1.10 6.71 86.72 0.58 1.68 16 20 C -0.13 -1.61 6.81 31.94 0.22 -1.39 16 21 C -0.56 -5.83 7.51 72.88 0.55 -5.28 16 22 S 2.55 54.78 6.17 -56.49 -0.35 54.43 16 23 O -1.01 -31.04 18.13 -127.77 -2.32 -33.36 16 24 O -0.99 -26.42 18.13 -127.77 -2.32 -28.73 16 25 C -0.03 -1.43 9.54 22.26 0.21 -1.22 16 26 C -0.20 -9.46 8.63 22.47 0.19 -9.26 16 27 H 0.30 11.89 8.29 -92.71 -0.77 11.12 16 28 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.10 4.74 7.63 -2.91 -0.02 4.71 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.80 7.30 -2.39 -0.02 1.78 16 36 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.17 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.13 4.66 7.59 -2.91 -0.02 4.64 16 41 H 0.12 5.57 6.15 -2.91 -0.02 5.55 16 Total: -1.00 -72.08 362.90 0.66 -71.43 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 1.05 Total: 27.20 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 4.15 Total: -27.71 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -1.44 Total: -57.70 kcal Atomic # 8 Polarization: -97.34 SS G_CDS: -4.80 Total: -102.14 kcal Atomic # 14 Polarization: 32.46 SS G_CDS: 2.03 Total: 34.49 kcal Atomic # 16 Polarization: 54.78 SS G_CDS: -0.35 Total: 54.43 kcal Total: -72.08 0.66 -71.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758680575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.376 kcal (2) G-P(sol) polarization free energy of solvation -72.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds