Wall clock time and date at job start Tue Mar 31 2020 22:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86802 * 120.00021 * 2 1 4 4 H 1.48494 * 109.47053 * 240.00075 * 3 2 1 5 5 H 1.48501 * 109.46980 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47134 * 120.00325 * 3 2 1 7 7 C 1.39941 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00311 * 168.94753 * 7 2 1 9 9 C 1.41404 * 119.99826 * 348.94166 * 7 2 1 10 10 C 1.40729 * 120.24358 * 332.42042 * 9 7 2 11 11 C 1.37596 * 119.74422 * 179.72361 * 10 9 7 12 12 C 1.38660 * 120.24594 * 0.25035 * 11 10 9 13 13 C 1.38611 * 120.50208 * 0.02562 * 12 11 10 14 14 C 1.37639 * 120.24878 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.12461 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46905 * 264.99696 * 15 14 13 17 17 O 1.21282 * 120.00113 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00304 * 179.97438 * 16 15 14 19 19 S 1.65596 * 120.00095 * 174.65512 * 18 16 15 20 20 O 1.42106 * 104.27779 * 180.89550 * 19 18 16 21 21 O 1.42097 * 104.27955 * 308.75606 * 19 18 16 22 22 C 1.81399 * 104.45019 * 64.82918 * 19 18 16 23 23 H 1.09005 * 110.45475 * 291.24656 * 22 19 18 24 24 C 1.54509 * 110.51154 * 53.84676 * 22 19 18 25 25 C 1.54482 * 104.05981 * 118.64577 * 24 22 19 26 26 O 1.44422 * 104.80221 * 23.98538 * 25 24 22 27 27 C 1.44640 * 105.36883 * 319.55988 * 26 25 24 28 28 H 0.97002 * 120.00378 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.12687 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.87452 * 180.23343 * 11 10 9 31 31 H 1.08005 * 119.74390 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.87194 * 180.02562 * 13 12 11 33 33 H 1.09001 * 109.47743 * 24.99895 * 15 14 13 34 34 H 1.08999 * 109.47268 * 145.00493 * 15 14 13 35 35 H 0.97000 * 119.99589 * 354.66202 * 18 16 15 36 36 H 1.08994 * 110.51840 * 237.29241 * 24 22 19 37 37 H 1.08999 * 110.50877 * 0.02562 * 24 22 19 38 38 H 1.09005 * 110.36997 * 142.81551 * 25 24 22 39 39 H 1.08999 * 110.37681 * 265.03732 * 25 24 22 40 40 H 1.09003 * 110.34498 * 281.59552 * 27 26 25 41 41 H 1.08997 * 110.51042 * 159.18936 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0729 -1.2206 -0.1798 9 6 1.3205 -2.4252 0.2338 10 6 0.1449 -2.4359 1.0073 11 6 -0.5188 -3.6215 1.2241 12 6 -0.0306 -4.8035 0.6881 13 6 1.1295 -4.8056 -0.0705 14 6 1.8098 -3.6314 -0.3003 15 6 3.0705 -3.6368 -1.1259 16 6 4.2672 -3.7309 -0.2148 17 8 4.1116 -3.7883 0.9866 18 7 5.5103 -3.7522 -0.7351 19 16 6.8281 -3.7218 0.2673 20 8 7.9409 -3.7335 -0.6164 21 8 6.5880 -2.6172 1.1284 22 6 6.7313 -5.2808 1.1896 23 1 5.8812 -5.2677 1.8717 24 6 6.6281 -6.4785 0.2190 25 6 7.8916 -7.3151 0.5195 26 8 8.2552 -6.9614 1.8718 27 6 8.0434 -5.5336 1.9647 28 1 -0.4851 0.8400 0.0004 29 1 -0.2375 -1.5163 1.4250 30 1 -1.4233 -3.6316 1.8142 31 1 -0.5579 -5.7296 0.8637 32 1 1.5004 -5.7320 -0.4836 33 1 3.0594 -4.4929 -1.8006 34 1 3.1280 -2.7167 -1.7073 35 1 5.6331 -3.7852 -1.6968 36 1 5.7284 -7.0590 0.4228 37 1 6.6357 -6.1339 -0.8150 38 1 7.6665 -8.3795 0.4532 39 1 8.6930 -7.0537 -0.1714 40 1 8.8693 -4.9968 1.4980 41 1 7.9333 -5.2309 3.0060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761106450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:03 Heat of formation + Delta-G solvation = -133.451169 kcal Electronic energy + Delta-G solvation = -27910.324721 eV Core-core repulsion = 23882.255084 eV Total energy + Delta-G solvation = -4028.069637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85055 -39.58647 -37.52756 -37.20691 -36.16331 -34.26692 -33.66658 -32.71848 -31.80543 -29.68467 -29.51193 -27.12883 -25.12172 -23.68273 -22.28612 -21.95027 -20.98831 -19.76938 -19.47517 -18.12772 -17.55782 -17.21355 -17.16674 -16.75681 -15.67684 -15.60895 -15.35285 -14.99239 -14.89059 -14.59206 -14.03921 -13.89048 -13.59401 -13.46692 -13.00306 -12.75337 -12.61454 -12.36511 -12.27385 -12.14092 -11.86877 -11.81289 -11.67731 -11.60658 -11.38804 -11.13072 -11.03887 -10.87529 -10.76280 -10.45153 -10.42874 -10.26665 -9.84737 -9.58287 -9.42839 -9.22610 -7.41193 -7.34973 -6.74304 -4.42339 -0.08963 2.21632 2.56305 2.78112 2.95242 3.06917 3.12089 3.25005 3.41109 3.48809 3.70435 3.93669 4.12914 4.34922 4.50679 4.61609 4.65400 4.74499 4.85405 5.07951 5.18089 5.20972 5.32002 5.42623 5.54202 5.61664 5.81531 5.87746 6.16865 6.24022 6.29445 6.42703 6.65174 6.81854 7.04372 7.22694 7.35333 7.57613 7.81468 7.90811 8.00497 8.06303 8.24336 8.59493 8.85816 8.93918 10.18004 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013873 B = 0.004070 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.847823 B = 6878.738886 C = 8256.434565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.154 4.154 11 C -0.106 4.106 12 C -0.238 4.238 13 C -0.080 4.080 14 C -0.194 4.194 15 C -0.069 4.069 16 C 0.533 3.467 17 O -0.477 6.477 18 N -1.057 6.057 19 S 2.597 3.403 20 O -0.949 6.949 21 O -0.921 6.921 22 C -0.629 4.629 23 H 0.165 0.835 24 C -0.126 4.126 25 C 0.043 3.957 26 O -0.360 6.360 27 C 0.073 3.927 28 H 0.281 0.719 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.431 0.569 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.601 -9.822 -3.507 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.173 4.173 11 C -0.125 4.125 12 C -0.257 4.257 13 C -0.098 4.098 14 C -0.196 4.196 15 C -0.111 4.111 16 C 0.321 3.679 17 O -0.346 6.346 18 N -0.824 5.824 19 S 2.690 3.310 20 O -0.940 6.940 21 O -0.911 6.911 22 C -0.738 4.738 23 H 0.182 0.818 24 C -0.165 4.165 25 C -0.034 4.034 26 O -0.278 6.278 27 C -0.005 4.005 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.267 0.733 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.963 -9.125 -2.371 15.231 hybrid contribution -0.108 0.399 -0.540 0.680 sum 11.855 -8.726 -2.911 15.005 Atomic orbital electron populations 1.69772 1.07394 1.29215 1.35907 1.25870 0.94794 1.01212 0.92228 0.86421 0.80147 0.80318 0.80273 1.18938 1.20237 1.18629 1.19503 0.95698 0.90529 1.42941 0.90753 1.17357 0.91216 0.91214 0.87561 1.21416 0.98107 0.96712 1.01074 1.20724 0.98438 0.93574 0.99729 1.20323 1.00265 0.96567 1.08582 1.20281 0.95616 0.95313 0.98628 1.19013 0.98142 0.94684 1.07762 1.20396 0.89862 1.04064 0.96755 1.21534 0.83647 0.72253 0.90483 1.90820 1.84844 1.43825 1.15072 1.55201 1.21883 1.82207 1.23137 1.05757 0.73310 0.76693 0.75267 1.93621 1.49735 1.87262 1.63369 1.93689 1.83659 1.46328 1.67472 1.31995 1.09402 1.19605 1.12823 0.81756 1.22724 1.01636 0.94656 0.97460 1.23521 0.95042 1.00584 0.84273 1.89170 1.87758 1.21143 1.29727 1.23143 0.91325 0.84123 1.01934 0.90828 0.86017 0.89477 0.89590 0.89654 0.89381 0.87355 0.73273 0.88313 0.89879 0.88015 0.91115 0.91249 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.18 10.78 55.55 0.60 -19.58 16 2 C 0.08 1.89 5.26 -17.35 -0.09 1.80 16 3 Si 0.90 18.99 29.57 -169.99 -5.03 13.96 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.46 -11.77 8.12 -37.74 -0.31 -12.08 16 8 H 0.07 1.87 6.71 -52.49 -0.35 1.51 16 9 C 0.13 3.31 5.56 -106.82 -0.59 2.72 16 10 C -0.15 -3.97 8.67 -38.88 -0.34 -4.31 16 11 C -0.11 -2.48 10.02 -39.66 -0.40 -2.88 16 12 C -0.24 -5.21 10.05 -39.29 -0.39 -5.61 16 13 C -0.08 -1.69 9.66 -39.66 -0.38 -2.08 16 14 C -0.19 -4.32 4.43 -103.92 -0.46 -4.78 16 15 C -0.07 -1.19 5.19 -29.04 -0.15 -1.35 16 16 C 0.53 9.11 7.20 -10.98 -0.08 9.03 16 17 O -0.48 -9.94 14.21 -9.56 -0.14 -10.08 16 18 N -1.06 -13.65 5.14 31.22 0.16 -13.49 16 19 S 2.60 36.17 4.31 -107.50 -0.46 35.71 16 20 O -0.95 -13.40 17.86 -57.54 -1.03 -14.43 16 21 O -0.92 -17.31 17.18 -64.19 -1.10 -18.42 16 22 C -0.63 -7.28 3.42 -25.16 -0.09 -7.37 16 23 H 0.16 2.06 7.29 -51.93 -0.38 1.68 16 24 C -0.13 -1.15 6.61 -25.16 -0.17 -1.32 16 25 C 0.04 0.37 7.64 37.93 0.29 0.66 16 26 O -0.36 -4.11 11.65 -35.23 -0.41 -4.52 16 27 C 0.07 0.79 7.22 37.93 0.27 1.06 16 28 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 29 H 0.12 3.26 6.14 -52.49 -0.32 2.94 16 30 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.09 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 34 H 0.11 1.85 7.07 -51.93 -0.37 1.48 16 35 H 0.43 3.75 8.79 -34.47 -0.30 3.45 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.60 7.41 -51.93 -0.38 0.21 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.66 7.64 -51.93 -0.40 0.26 16 41 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -33.87 355.20 -9.96 -43.83 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.02 Total: 8.15 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -2.88 Total: -26.48 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.76 Total: -33.08 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -2.68 Total: -47.44 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Atomic # 16 Polarization: 36.17 SS G_CDS: -0.46 Total: 35.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.87 -9.96 -43.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761106450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.621 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds