Wall clock time and date at job start Tue Mar 31 2020 22:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86808 * 120.00005 * 2 1 4 4 H 1.48493 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47221 * 300.00683 * 3 2 1 6 6 H 1.48502 * 109.46880 * 60.00151 * 3 2 1 7 7 C 1.39938 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99813 * 162.56802 * 7 2 1 9 9 C 1.41433 * 120.00186 * 342.57106 * 7 2 1 10 10 C 1.40783 * 120.17729 * 154.96101 * 9 7 2 11 11 C 1.37711 * 120.03874 * 179.97438 * 10 9 7 12 12 C 1.38377 * 120.41190 * 0.02562 * 11 10 9 13 13 C 1.39879 * 120.35612 * 0.27631 * 12 11 10 14 14 C 1.47884 * 120.02245 * 179.69850 * 13 12 11 15 15 O 1.21550 * 120.00014 * 179.97438 * 14 13 12 16 16 N 1.34781 * 120.00456 * 0.02562 * 14 13 12 17 17 S 1.65600 * 120.00377 * 179.97438 * 16 14 13 18 18 O 1.42102 * 104.27539 * 181.06609 * 17 16 14 19 19 O 1.42094 * 104.27331 * 308.92386 * 17 16 14 20 20 C 1.81404 * 104.44936 * 64.99389 * 17 16 14 21 21 C 1.52998 * 109.46927 * 179.97438 * 20 17 16 22 22 H 1.09006 * 110.80397 * 308.63004 * 21 20 17 23 23 C 1.54807 * 110.90869 * 185.00049 * 21 20 17 24 24 C 1.54091 * 104.19041 * 220.92268 * 23 21 20 25 25 O 1.43741 * 107.29546 * 357.96808 * 24 23 21 26 26 C 1.44385 * 106.97348 * 26.51427 * 25 24 23 27 27 C 1.39030 * 119.95191 * 359.44538 * 13 12 11 28 28 H 0.97005 * 120.00363 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.98498 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.79429 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.82235 * 179.97438 * 12 11 10 32 32 H 0.96998 * 119.99173 * 359.97438 * 16 14 13 33 33 H 1.09002 * 109.46972 * 300.00167 * 20 17 16 34 34 H 1.09001 * 109.46908 * 60.00070 * 20 17 16 35 35 H 1.09003 * 110.48536 * 339.59957 * 23 21 20 36 36 H 1.09003 * 110.49018 * 102.10630 * 23 21 20 37 37 H 1.09008 * 109.88079 * 117.39513 * 24 23 21 38 38 H 1.08996 * 109.88227 * 238.54337 * 24 23 21 39 39 H 1.08997 * 110.61966 * 201.43857 * 26 25 24 40 40 H 1.09004 * 110.61851 * 78.44152 * 26 25 24 41 41 H 1.08005 * 120.20612 * 180.27381 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8835 2.3965 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0507 -1.2332 -0.2807 9 6 1.3495 -2.4088 0.3658 10 6 1.8194 -3.6485 -0.1078 11 6 1.1765 -4.8122 0.2511 12 6 0.0667 -4.7733 1.0768 13 6 -0.4184 -3.5504 1.5520 14 6 -1.6089 -3.5169 2.4286 15 8 -2.0298 -2.4541 2.8416 16 7 -2.2267 -4.6650 2.7705 17 16 -3.5595 -4.6275 3.7526 18 8 -3.9152 -5.9939 3.9128 19 8 -3.1535 -3.8411 4.8642 20 6 -4.8151 -3.7527 2.7786 21 6 -6.1099 -3.6529 3.5876 22 1 -6.4056 -4.6310 3.9671 23 6 -7.2428 -3.0229 2.7414 24 6 -7.9635 -2.0759 3.7204 25 8 -7.3200 -2.2120 4.9985 26 6 -5.9621 -2.6317 4.7441 27 6 0.2227 -2.3669 1.2038 28 1 -0.4851 0.8401 0.0004 29 1 2.6852 -3.6871 -0.7523 30 1 1.5401 -5.7610 -0.1148 31 1 -0.4305 -5.6918 1.3520 32 1 -1.8905 -5.5132 2.4411 33 1 -4.4571 -2.7512 2.5400 34 1 -5.0052 -4.3001 1.8554 35 1 -6.8270 -2.4620 1.9044 36 1 -7.9243 -3.7939 2.3818 37 1 -7.8791 -1.0469 3.3706 38 1 -9.0135 -2.3565 3.8023 39 1 -5.5364 -3.1098 5.6263 40 1 -5.3506 -1.7848 4.4326 41 1 -0.1457 -1.4207 1.5719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762134853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:14 Heat of formation + Delta-G solvation = -140.134410 kcal Electronic energy + Delta-G solvation = -27203.283601 eV Core-core repulsion = 23174.924157 eV Total energy + Delta-G solvation = -4028.359444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.76877 -39.68604 -37.40834 -37.04889 -36.07663 -34.37756 -34.06435 -33.70666 -30.31040 -30.19727 -29.64207 -27.01724 -25.52089 -23.65130 -22.94948 -21.26846 -21.08530 -20.39044 -19.49121 -18.30971 -17.84459 -17.18107 -16.48410 -16.35521 -15.76813 -15.64178 -15.37982 -15.19116 -14.82712 -14.58970 -14.38449 -14.19325 -13.49107 -13.34671 -13.06977 -12.83992 -12.71104 -12.61090 -12.47935 -12.22182 -12.05692 -11.82309 -11.77602 -11.46442 -11.33847 -11.22007 -11.06804 -10.91202 -10.84807 -10.63118 -10.39446 -10.33979 -9.92339 -9.87423 -9.53206 -9.36606 -7.88698 -7.70338 -6.95985 -4.56814 0.01094 1.75067 2.41573 2.64804 2.99682 3.02392 3.05826 3.29236 3.51824 3.68573 3.81413 3.94341 4.11722 4.32186 4.42323 4.46458 4.74271 4.78214 4.92502 4.95701 5.08789 5.31416 5.36446 5.41035 5.44580 5.47046 5.60553 5.62016 5.77463 5.88676 6.08604 6.49507 6.56857 6.69711 6.81485 6.94724 7.04507 7.16854 7.50161 7.58076 7.77709 7.95456 8.08446 8.32264 8.63915 8.65989 9.99185 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.003350 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.929322 B = 8356.283229 C = 9852.836756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.455 4.455 8 H 0.084 0.916 9 C 0.097 3.903 10 C -0.205 4.205 11 C -0.095 4.095 12 C -0.216 4.216 13 C -0.136 4.136 14 C 0.585 3.415 15 O -0.504 6.504 16 N -1.054 6.054 17 S 2.593 3.407 18 O -0.953 6.953 19 O -0.926 6.926 20 C -0.616 4.616 21 C -0.113 4.113 22 H 0.100 0.900 23 C -0.143 4.143 24 C 0.044 3.956 25 O -0.373 6.373 26 C 0.036 3.964 27 C -0.084 4.084 28 H 0.285 0.715 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.432 0.568 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 -5.688 1.919 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.094 3.906 10 C -0.225 4.225 11 C -0.113 4.113 12 C -0.237 4.237 13 C -0.141 4.141 14 C 0.377 3.623 15 O -0.378 6.378 16 N -0.820 5.820 17 S 2.688 3.312 18 O -0.943 6.943 19 O -0.916 6.916 20 C -0.746 4.746 21 C -0.133 4.133 22 H 0.118 0.882 23 C -0.182 4.182 24 C -0.033 4.033 25 O -0.292 6.292 26 C -0.041 4.041 27 C -0.104 4.104 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.270 0.730 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.807 -5.051 3.274 13.253 hybrid contribution 0.421 0.424 -1.242 1.378 sum -11.386 -4.627 2.032 12.457 Atomic orbital electron populations 1.69762 1.07664 1.29905 1.33549 1.25981 0.94815 1.01722 0.92082 0.86200 0.80927 0.80547 0.78799 1.18237 1.19838 1.19420 1.19657 0.98201 0.90877 1.39651 0.89800 1.17609 0.91144 0.92629 0.89199 1.21170 1.03338 0.92727 1.05214 1.20462 0.95815 0.96970 0.98071 1.20354 1.01469 0.94512 1.07330 1.19298 0.96457 0.95867 1.02470 1.18885 0.83711 0.81382 0.78346 1.90852 1.65460 1.28800 1.52663 1.54980 1.44965 1.17150 1.64886 1.05671 0.75200 0.74996 0.75373 1.93625 1.83429 1.32166 1.85112 1.93655 1.79114 1.71628 1.47219 1.30535 1.12499 1.17242 1.14278 1.22478 0.93097 1.01647 0.96110 0.88153 1.22988 0.96748 0.99538 0.98939 1.23201 0.97523 0.99058 0.83507 1.88886 1.23764 1.89265 1.27276 1.23983 0.85011 0.97001 0.98088 1.21702 0.96229 0.96253 0.96263 0.90340 0.88292 0.88488 0.88868 0.73009 0.83088 0.84182 0.89651 0.89776 0.91923 0.89590 0.87763 0.90224 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.34 10.97 55.55 0.61 -18.73 16 2 C 0.07 1.74 5.14 -17.35 -0.09 1.65 16 3 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.46 -11.23 9.05 -37.73 -0.34 -11.57 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.10 2.39 5.57 -106.87 -0.59 1.79 16 10 C -0.20 -4.50 9.78 -38.81 -0.38 -4.88 16 11 C -0.09 -1.86 10.01 -39.72 -0.40 -2.26 16 12 C -0.22 -4.15 9.55 -38.92 -0.37 -4.52 16 13 C -0.14 -2.92 5.87 -105.04 -0.62 -3.53 16 14 C 0.58 11.35 7.51 -12.31 -0.09 11.25 16 15 O -0.50 -10.86 14.43 -11.81 -0.17 -11.03 16 16 N -1.05 -15.85 5.55 30.54 0.17 -15.68 16 17 S 2.59 36.79 4.97 -107.50 -0.53 36.25 16 18 O -0.95 -14.28 18.08 -57.54 -1.04 -15.32 16 19 O -0.93 -16.39 16.07 -64.79 -1.04 -17.43 16 20 C -0.62 -6.90 5.26 37.16 0.20 -6.71 16 21 C -0.11 -1.20 3.09 -88.62 -0.27 -1.47 16 22 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 23 C -0.14 -1.25 6.60 -25.21 -0.17 -1.41 16 24 C 0.04 0.41 7.70 37.73 0.29 0.70 16 25 O -0.37 -4.71 11.52 -35.23 -0.41 -5.11 16 26 C 0.04 0.44 6.41 38.21 0.24 0.69 16 27 C -0.08 -2.07 8.23 -38.44 -0.32 -2.39 16 28 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 29 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.09 1.42 6.38 -52.48 -0.33 1.09 16 32 H 0.43 5.35 6.81 -34.47 -0.23 5.11 16 33 H 0.15 1.84 7.03 -51.92 -0.37 1.48 16 34 H 0.14 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.08 0.70 7.86 -51.93 -0.41 0.30 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.27 7.77 -51.93 -0.40 0.87 16 40 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 41 H 0.14 3.61 5.76 -52.48 -0.30 3.30 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -30.95 354.84 -9.97 -40.93 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.97 Total: 10.68 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -2.91 Total: -22.65 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.78 Total: -34.41 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -2.66 Total: -48.90 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 16 Polarization: 36.79 SS G_CDS: -0.53 Total: 36.25 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.95 -9.97 -40.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762134853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.207 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds