Wall clock time and date at job start Tue Mar 31 2020 22:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86808 * 120.00005 * 2 1 4 4 H 1.48493 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47221 * 300.00683 * 3 2 1 6 6 H 1.48502 * 109.46880 * 60.00151 * 3 2 1 7 7 C 1.39938 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99813 * 162.56802 * 7 2 1 9 9 C 1.41433 * 120.00186 * 342.57106 * 7 2 1 10 10 C 1.40783 * 120.17729 * 154.96101 * 9 7 2 11 11 C 1.37711 * 120.03874 * 179.97438 * 10 9 7 12 12 C 1.38377 * 120.41190 * 0.02562 * 11 10 9 13 13 C 1.39879 * 120.35612 * 0.27631 * 12 11 10 14 14 C 1.47884 * 120.02245 * 179.69850 * 13 12 11 15 15 O 1.21550 * 120.00014 * 179.97438 * 14 13 12 16 16 N 1.34781 * 120.00456 * 0.02562 * 14 13 12 17 17 S 1.65600 * 120.00377 * 179.97438 * 16 14 13 18 18 O 1.42102 * 104.27539 * 181.06609 * 17 16 14 19 19 O 1.42094 * 104.27331 * 308.92386 * 17 16 14 20 20 C 1.81404 * 104.44936 * 64.99389 * 17 16 14 21 21 C 1.52998 * 109.46927 * 179.97438 * 20 17 16 22 22 H 1.09006 * 110.80397 * 308.63004 * 21 20 17 23 23 C 1.54807 * 110.90869 * 185.00049 * 21 20 17 24 24 C 1.54091 * 104.19041 * 220.92268 * 23 21 20 25 25 O 1.43741 * 107.29546 * 357.96808 * 24 23 21 26 26 C 1.44385 * 106.97348 * 26.51427 * 25 24 23 27 27 C 1.39030 * 119.95191 * 359.44538 * 13 12 11 28 28 H 0.97005 * 120.00363 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.98498 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.79429 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.82235 * 179.97438 * 12 11 10 32 32 H 0.96998 * 119.99173 * 359.97438 * 16 14 13 33 33 H 1.09002 * 109.46972 * 300.00167 * 20 17 16 34 34 H 1.09001 * 109.46908 * 60.00070 * 20 17 16 35 35 H 1.09003 * 110.48536 * 339.59957 * 23 21 20 36 36 H 1.09003 * 110.49018 * 102.10630 * 23 21 20 37 37 H 1.09008 * 109.88079 * 117.39513 * 24 23 21 38 38 H 1.08996 * 109.88227 * 238.54337 * 24 23 21 39 39 H 1.08997 * 110.61966 * 201.43857 * 26 25 24 40 40 H 1.09004 * 110.61851 * 78.44152 * 26 25 24 41 41 H 1.08005 * 120.20612 * 180.27381 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8835 2.3965 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0507 -1.2332 -0.2807 9 6 1.3495 -2.4088 0.3658 10 6 1.8194 -3.6485 -0.1078 11 6 1.1765 -4.8122 0.2511 12 6 0.0667 -4.7733 1.0768 13 6 -0.4184 -3.5504 1.5520 14 6 -1.6089 -3.5169 2.4286 15 8 -2.0298 -2.4541 2.8416 16 7 -2.2267 -4.6650 2.7705 17 16 -3.5595 -4.6275 3.7526 18 8 -3.9152 -5.9939 3.9128 19 8 -3.1535 -3.8411 4.8642 20 6 -4.8151 -3.7527 2.7786 21 6 -6.1099 -3.6529 3.5876 22 1 -6.4056 -4.6310 3.9671 23 6 -7.2428 -3.0229 2.7414 24 6 -7.9635 -2.0759 3.7204 25 8 -7.3200 -2.2120 4.9985 26 6 -5.9621 -2.6317 4.7441 27 6 0.2227 -2.3669 1.2038 28 1 -0.4851 0.8401 0.0004 29 1 2.6852 -3.6871 -0.7523 30 1 1.5401 -5.7610 -0.1148 31 1 -0.4305 -5.6918 1.3520 32 1 -1.8905 -5.5132 2.4411 33 1 -4.4571 -2.7512 2.5400 34 1 -5.0052 -4.3001 1.8554 35 1 -6.8270 -2.4620 1.9044 36 1 -7.9243 -3.7939 2.3818 37 1 -7.8791 -1.0469 3.3706 38 1 -9.0135 -2.3565 3.8023 39 1 -5.5364 -3.1098 5.6263 40 1 -5.3506 -1.7848 4.4326 41 1 -0.1457 -1.4207 1.5719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762134853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:14 Heat of formation + Delta-G solvation = -161.819655 kcal Electronic energy + Delta-G solvation = -27204.223944 eV Core-core repulsion = 23174.924157 eV Total energy + Delta-G solvation = -4029.299787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31403 -40.53100 -39.00398 -38.34485 -37.31824 -35.89673 -35.32942 -34.96562 -31.99270 -31.33072 -30.96741 -27.96466 -27.26956 -25.21243 -23.75375 -22.89869 -22.00643 -21.90804 -20.72581 -19.83559 -19.14722 -18.25330 -18.02231 -17.33092 -17.12689 -16.76251 -16.62234 -16.44364 -16.21814 -15.99622 -15.94989 -15.16719 -15.07342 -14.67941 -14.34721 -14.17228 -13.85713 -13.69099 -13.51141 -13.48858 -13.43788 -13.30033 -13.00140 -12.81584 -12.57696 -12.56234 -12.39477 -12.21916 -12.08905 -12.05624 -11.77973 -11.53808 -11.47404 -11.13298 -11.09240 -10.77871 -9.58822 -9.42180 -8.69072 -6.39183 -1.12655 0.11262 0.97519 1.18932 1.38493 1.44740 1.53166 1.74022 2.18960 2.41840 2.71546 2.76606 2.94195 3.19517 3.36212 3.52308 3.61420 3.65786 3.93640 3.96607 4.06283 4.18711 4.25571 4.39485 4.44051 4.55184 4.62090 4.72087 4.79660 4.85576 4.92495 5.04616 5.06935 5.12984 5.28252 5.46314 5.58018 5.74187 5.82043 5.91091 6.03548 6.25802 6.51562 6.56741 6.87225 6.90242 8.28344 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.003350 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.929322 B = 8356.283229 C = 9852.836756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.034 3.966 3 Si 0.978 3.022 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.271 1.271 7 C -0.494 4.494 8 H 0.083 0.917 9 C 0.066 3.934 10 C -0.209 4.209 11 C -0.095 4.095 12 C -0.195 4.195 13 C -0.146 4.146 14 C 0.591 3.409 15 O -0.531 6.531 16 N -1.039 6.039 17 S 2.595 3.405 18 O -0.957 6.957 19 O -0.967 6.967 20 C -0.596 4.596 21 C -0.116 4.116 22 H 0.117 0.883 23 C -0.138 4.138 24 C 0.034 3.966 25 O -0.394 6.394 26 C 0.026 3.974 27 C -0.122 4.122 28 H 0.288 0.712 29 H 0.110 0.890 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.445 0.555 33 H 0.142 0.858 34 H 0.178 0.822 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 -7.968 0.898 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.177 1.177 5 H -0.189 1.189 6 H -0.196 1.196 7 C -0.523 4.523 8 H 0.101 0.899 9 C 0.063 3.937 10 C -0.229 4.229 11 C -0.113 4.113 12 C -0.215 4.215 13 C -0.151 4.151 14 C 0.382 3.618 15 O -0.407 6.407 16 N -0.804 5.804 17 S 2.693 3.307 18 O -0.948 6.948 19 O -0.957 6.957 20 C -0.729 4.729 21 C -0.137 4.137 22 H 0.135 0.865 23 C -0.177 4.177 24 C -0.043 4.043 25 O -0.313 6.313 26 C -0.051 4.051 27 C -0.142 4.142 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.285 0.715 33 H 0.161 0.839 34 H 0.196 0.804 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.875 -7.397 2.259 15.019 hybrid contribution 0.649 0.914 -0.892 1.433 sum -12.226 -6.482 1.368 13.905 Atomic orbital electron populations 1.69836 1.09008 1.30653 1.35264 1.26749 0.95438 1.04645 0.91333 0.85211 0.79705 0.76438 0.78763 1.17702 1.18879 1.19632 1.19882 0.98458 0.92094 1.41900 0.89865 1.17937 0.91849 0.93910 0.89957 1.21479 1.03658 0.92821 1.04901 1.20950 0.95256 0.97855 0.97248 1.20939 1.00535 0.95255 1.04760 1.19582 0.96975 0.95954 1.02630 1.18596 0.83288 0.82000 0.77896 1.90845 1.66032 1.30299 1.53553 1.54729 1.45202 1.16369 1.64147 1.05560 0.75329 0.74709 0.75069 1.93617 1.83262 1.32595 1.85291 1.93612 1.80149 1.72324 1.49660 1.30386 1.11063 1.16466 1.15027 1.22600 0.93301 1.02088 0.95695 0.86475 1.23033 0.96225 0.99989 0.98403 1.23469 0.98579 0.99687 0.82534 1.88861 1.23717 1.89441 1.29284 1.23999 0.85070 0.97219 0.98777 1.21515 0.97923 0.96416 0.98369 0.90134 0.87214 0.84116 0.84033 0.71489 0.83947 0.80409 0.89138 0.87022 0.91722 0.87410 0.88510 0.91612 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.71 10.97 21.82 0.24 -42.47 16 2 C 0.03 1.67 5.14 85.26 0.44 2.10 16 3 Si 0.98 37.77 29.59 68.60 2.03 39.80 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 6 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 7 C -0.49 -25.44 9.05 23.47 0.21 -25.23 16 8 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 9 C 0.07 3.34 5.57 -21.32 -0.12 3.22 16 10 C -0.21 -9.03 9.78 22.77 0.22 -8.80 16 11 C -0.10 -3.42 10.01 22.18 0.22 -3.19 16 12 C -0.20 -6.85 9.55 22.70 0.22 -6.64 16 13 C -0.15 -6.23 5.87 -20.14 -0.12 -6.35 16 14 C 0.59 22.68 7.51 86.80 0.65 23.33 16 15 O -0.53 -23.55 14.43 12.51 0.18 -23.37 16 16 N -1.04 -29.23 5.55 -175.57 -0.98 -30.21 16 17 S 2.59 70.00 4.97 -56.49 -0.28 69.71 16 18 O -0.96 -26.41 18.08 -127.65 -2.31 -28.72 16 19 O -0.97 -34.56 16.07 -120.72 -1.94 -36.50 16 20 C -0.60 -12.09 5.26 71.98 0.38 -11.71 16 21 C -0.12 -2.22 3.09 -9.50 -0.03 -2.25 16 22 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 23 C -0.14 -1.98 6.60 31.58 0.21 -1.77 16 24 C 0.03 0.57 7.70 72.35 0.56 1.13 16 25 O -0.39 -9.71 11.52 -148.98 -1.72 -11.42 16 26 C 0.03 0.65 6.41 72.66 0.47 1.11 16 27 C -0.12 -6.21 8.23 23.01 0.19 -6.02 16 28 H 0.29 13.70 8.30 -92.70 -0.77 12.93 16 29 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 31 H 0.14 3.55 6.38 -2.91 -0.02 3.53 16 32 H 0.44 9.50 6.81 -96.74 -0.66 8.84 16 33 H 0.14 3.34 7.03 -2.39 -0.02 3.32 16 34 H 0.18 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.09 1.23 7.86 -2.39 -0.02 1.21 16 36 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 2.45 7.77 -2.39 -0.02 2.43 16 40 H 0.07 1.76 7.93 -2.38 -0.02 1.74 16 41 H 0.11 6.00 5.76 -2.91 -0.02 5.98 16 Total: -1.00 -71.16 354.84 -0.85 -72.01 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.42 Total: 32.21 kcal Atomic # 6 Polarization: -44.56 SS G_CDS: 3.50 Total: -41.06 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -0.74 Total: -72.67 kcal Atomic # 8 Polarization: -94.22 SS G_CDS: -5.78 Total: -100.01 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Atomic # 16 Polarization: 70.00 SS G_CDS: -0.28 Total: 69.71 kcal Total: -71.16 -0.85 -72.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762134853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.808 kcal (2) G-P(sol) polarization free energy of solvation -71.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds