Wall clock time and date at job start Tue Mar 31 2020 22:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86790 * 120.00403 * 2 1 4 4 H 1.48506 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47077 * 299.99838 * 3 2 1 6 6 H 1.48495 * 109.47464 * 59.99861 * 3 2 1 7 7 C 1.39945 * 119.99579 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99890 * 162.81232 * 7 2 1 9 9 C 1.41437 * 119.99851 * 342.80952 * 7 2 1 10 10 C 1.40789 * 120.17524 * 154.74700 * 9 7 2 11 11 C 1.37710 * 120.04138 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.40948 * 0.02562 * 11 10 9 13 13 C 1.39878 * 120.36079 * 359.97438 * 12 11 10 14 14 C 1.47883 * 120.02562 * 180.02562 * 13 12 11 15 15 O 1.21551 * 119.99721 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00037 * 0.02562 * 14 13 12 17 17 S 1.65597 * 119.99932 * 180.02562 * 16 14 13 18 18 O 1.42097 * 104.27807 * 181.07750 * 17 16 14 19 19 O 1.42107 * 104.27920 * 308.92840 * 17 16 14 20 20 C 1.81402 * 104.45275 * 64.99847 * 17 16 14 21 21 C 1.52997 * 109.47241 * 179.97438 * 20 17 16 22 22 H 1.08999 * 110.45920 * 52.40010 * 21 20 17 23 23 C 1.54503 * 110.51085 * 175.00488 * 21 20 17 24 24 C 1.54482 * 104.06705 * 118.64294 * 23 21 20 25 25 O 1.44427 * 104.79789 * 23.98239 * 24 23 21 26 26 C 1.44422 * 105.27659 * 319.48493 * 25 24 23 27 27 C 1.39038 * 119.94797 * 0.02562 * 13 12 11 28 28 H 0.96998 * 119.99202 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.97732 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.79579 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.81630 * 179.97438 * 12 11 10 32 32 H 0.96999 * 119.99925 * 0.02562 * 16 14 13 33 33 H 1.08992 * 109.47054 * 300.00495 * 20 17 16 34 34 H 1.09002 * 109.46333 * 60.00395 * 20 17 16 35 35 H 1.09006 * 110.51182 * 237.28924 * 23 21 20 36 36 H 1.09010 * 110.51307 * 359.97438 * 23 21 20 37 37 H 1.09005 * 110.37124 * 142.80418 * 24 23 21 38 38 H 1.08988 * 110.37364 * 265.14601 * 24 23 21 39 39 H 1.08999 * 110.37320 * 281.68657 * 26 25 24 40 40 H 1.09000 * 110.37565 * 159.34661 * 26 25 24 41 41 H 1.07996 * 120.19811 * 179.72824 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7024 1.3461 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8837 2.3964 1.2124 7 6 2.0079 -1.2120 0.0005 8 1 3.0517 -1.2331 -0.2758 9 6 1.3480 -2.4093 0.3631 10 6 1.8169 -3.6482 -0.1139 11 6 1.1719 -4.8122 0.2404 12 6 0.0613 -4.7744 1.0648 13 6 -0.4191 -3.5530 1.5485 14 6 -1.6063 -3.5213 2.4295 15 8 -2.0236 -2.4596 2.8491 16 7 -2.2257 -4.6697 2.7672 17 16 -3.5556 -4.6342 3.7534 18 8 -3.9140 -6.0006 3.9078 19 8 -3.1448 -3.8542 4.8679 20 6 -4.8121 -3.7517 2.7874 21 6 -6.1043 -3.6531 3.6005 22 1 -5.9030 -3.2339 4.5864 23 6 -7.1510 -2.7978 2.8521 24 6 -8.3280 -3.7694 2.6129 25 8 -8.1900 -4.7759 3.6394 26 6 -6.7728 -5.0402 3.7251 27 6 0.2206 -2.3687 1.2002 28 1 -0.4849 0.8401 -0.0004 29 1 2.6829 -3.6856 -0.7581 30 1 1.5348 -5.7603 -0.1282 31 1 -0.4375 -5.6932 1.3363 32 1 -1.8925 -5.5170 2.4327 33 1 -4.4526 -2.7499 2.5528 34 1 -5.0060 -4.2942 1.8620 35 1 -7.4689 -1.9572 3.4689 36 1 -6.7476 -2.4449 1.9028 37 1 -9.2788 -3.2470 2.7191 38 1 -8.2512 -4.2223 1.6245 39 1 -6.4575 -5.6881 2.9073 40 1 -6.5288 -5.4941 4.6856 41 1 -0.1494 -1.4230 1.5677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762134854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:17 Heat of formation + Delta-G solvation = -139.793721 kcal Electronic energy + Delta-G solvation = -27120.745181 eV Core-core repulsion = 23092.400510 eV Total energy + Delta-G solvation = -4028.344671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.78558 -39.74963 -37.40907 -37.04607 -36.07523 -34.38390 -34.08024 -33.70625 -30.30877 -30.15740 -29.64364 -27.02198 -25.52157 -23.65387 -23.21370 -21.24431 -20.98222 -20.39180 -19.51371 -18.28847 -17.86544 -17.11618 -16.54770 -16.35981 -15.85296 -15.62889 -15.42696 -15.21361 -14.82233 -14.63447 -14.38778 -14.19275 -13.48320 -13.26823 -13.07566 -12.98324 -12.73706 -12.56320 -12.49151 -12.19548 -12.05846 -11.82323 -11.73608 -11.47480 -11.34168 -11.22246 -11.08188 -10.92188 -10.87241 -10.63271 -10.38601 -10.33561 -10.11200 -9.87589 -9.53387 -9.36812 -7.88850 -7.70223 -6.95871 -4.56931 0.01361 1.74811 2.41604 2.64684 2.99483 3.02194 3.05652 3.29302 3.53229 3.64684 3.81329 3.96012 4.12919 4.25813 4.43450 4.45259 4.71521 4.77010 4.90155 4.92532 5.08890 5.30661 5.36488 5.39485 5.40918 5.44211 5.48415 5.65220 5.70334 5.88484 6.08466 6.41789 6.49444 6.69526 6.81418 6.94723 7.04562 7.16717 7.50048 7.57937 7.77673 7.95319 8.08293 8.32219 8.63848 8.65920 9.99308 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.003081 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.123654 B = 9084.425848 C =10166.214490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.455 4.455 8 H 0.084 0.916 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.095 4.095 12 C -0.216 4.216 13 C -0.136 4.136 14 C 0.584 3.416 15 O -0.504 6.504 16 N -1.054 6.054 17 S 2.592 3.408 18 O -0.951 6.951 19 O -0.928 6.928 20 C -0.617 4.617 21 C -0.113 4.113 22 H 0.101 0.899 23 C -0.143 4.143 24 C 0.041 3.959 25 O -0.369 6.369 26 C 0.033 3.967 27 C -0.084 4.084 28 H 0.285 0.715 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.432 0.568 33 H 0.153 0.847 34 H 0.137 0.863 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.153 -5.848 1.826 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.094 3.906 10 C -0.224 4.224 11 C -0.113 4.113 12 C -0.236 4.236 13 C -0.141 4.141 14 C 0.376 3.624 15 O -0.378 6.378 16 N -0.820 5.820 17 S 2.687 3.313 18 O -0.941 6.941 19 O -0.919 6.919 20 C -0.746 4.746 21 C -0.133 4.133 22 H 0.119 0.881 23 C -0.182 4.182 24 C -0.035 4.035 25 O -0.288 6.288 26 C -0.044 4.044 27 C -0.104 4.104 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.270 0.730 33 H 0.171 0.829 34 H 0.155 0.845 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.859 -5.362 3.106 13.380 hybrid contribution 0.556 0.674 -1.073 1.384 sum -11.302 -4.688 2.032 12.404 Atomic orbital electron populations 1.69765 1.07654 1.29879 1.33612 1.25985 0.94830 1.01730 0.92106 0.86190 0.80905 0.80527 0.78782 1.18254 1.19839 1.19444 1.19656 0.98107 0.90853 1.39769 0.89800 1.17610 0.91146 0.92639 0.89193 1.21175 1.03316 0.92743 1.05175 1.20463 0.95777 0.96973 0.98121 1.20353 1.01474 0.94536 1.07248 1.19301 0.96546 0.95896 1.02369 1.18893 0.83639 0.81376 0.78459 1.90855 1.65495 1.28916 1.52565 1.54976 1.45095 1.17191 1.64713 1.05695 0.75228 0.75047 0.75339 1.93625 1.83335 1.31998 1.85159 1.93656 1.78989 1.72011 1.47198 1.30615 1.12671 1.17366 1.13987 1.22302 0.93045 0.98010 0.99936 0.88066 1.23002 0.94738 0.98775 1.01675 1.23491 0.99219 0.88906 0.91926 1.89141 1.22901 1.59212 1.57543 1.23849 0.81638 0.95015 1.03916 1.21706 0.96243 0.96239 0.96261 0.90355 0.88283 0.88475 0.88854 0.72983 0.82908 0.84468 0.89744 0.89441 0.88704 0.91910 0.90770 0.87996 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.34 10.96 55.55 0.61 -18.73 16 2 C 0.07 1.73 5.15 -17.34 -0.09 1.64 16 3 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.46 -11.23 9.05 -37.73 -0.34 -11.57 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.10 2.39 5.57 -106.87 -0.59 1.79 16 10 C -0.20 -4.49 9.78 -38.81 -0.38 -4.87 16 11 C -0.10 -1.86 10.01 -39.73 -0.40 -2.26 16 12 C -0.22 -4.14 9.55 -38.92 -0.37 -4.51 16 13 C -0.14 -2.93 5.87 -105.04 -0.62 -3.55 16 14 C 0.58 11.43 7.51 -12.31 -0.09 11.34 16 15 O -0.50 -11.03 14.43 -11.81 -0.17 -11.20 16 16 N -1.05 -15.90 5.55 30.54 0.17 -15.73 16 17 S 2.59 36.85 4.94 -107.50 -0.53 36.32 16 18 O -0.95 -13.67 17.27 -57.54 -0.99 -14.66 16 19 O -0.93 -17.04 17.04 -64.79 -1.10 -18.14 16 20 C -0.62 -6.95 5.08 37.16 0.19 -6.76 16 21 C -0.11 -1.19 3.11 -89.05 -0.28 -1.47 16 22 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 23 C -0.14 -1.27 6.74 -25.16 -0.17 -1.44 16 24 C 0.04 0.36 7.63 37.94 0.29 0.65 16 25 O -0.37 -4.22 11.65 -35.23 -0.41 -4.63 16 26 C 0.03 0.35 6.16 37.94 0.23 0.59 16 27 C -0.08 -2.08 8.24 -38.44 -0.32 -2.39 16 28 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 29 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.09 1.42 6.38 -52.48 -0.33 1.09 16 32 H 0.43 5.32 6.81 -34.47 -0.23 5.09 16 33 H 0.15 1.87 7.19 -51.93 -0.37 1.49 16 34 H 0.14 1.18 7.96 -51.92 -0.41 0.77 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.72 7.73 -51.92 -0.40 0.32 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.48 8.14 -51.94 -0.42 0.05 16 39 H 0.07 0.72 7.74 -51.93 -0.40 0.32 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.14 3.62 5.76 -52.49 -0.30 3.32 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -31.15 354.79 -10.02 -41.17 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.97 Total: 10.34 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -2.93 Total: -22.82 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.78 Total: -34.47 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -2.68 Total: -48.64 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 16 Polarization: 36.85 SS G_CDS: -0.53 Total: 36.32 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.15 -10.02 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762134854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.620 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds