Wall clock time and date at job start Tue Mar 31 2020 22:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86790 * 120.00403 * 2 1 4 4 H 1.48506 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47077 * 299.99838 * 3 2 1 6 6 H 1.48495 * 109.47464 * 59.99861 * 3 2 1 7 7 C 1.39945 * 119.99579 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99890 * 162.81232 * 7 2 1 9 9 C 1.41437 * 119.99851 * 342.80952 * 7 2 1 10 10 C 1.40789 * 120.17524 * 154.74700 * 9 7 2 11 11 C 1.37710 * 120.04138 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.40948 * 0.02562 * 11 10 9 13 13 C 1.39878 * 120.36079 * 359.97438 * 12 11 10 14 14 C 1.47883 * 120.02562 * 180.02562 * 13 12 11 15 15 O 1.21551 * 119.99721 * 180.02562 * 14 13 12 16 16 N 1.34777 * 120.00037 * 0.02562 * 14 13 12 17 17 S 1.65597 * 119.99932 * 180.02562 * 16 14 13 18 18 O 1.42097 * 104.27807 * 181.07750 * 17 16 14 19 19 O 1.42107 * 104.27920 * 308.92840 * 17 16 14 20 20 C 1.81402 * 104.45275 * 64.99847 * 17 16 14 21 21 C 1.52997 * 109.47241 * 179.97438 * 20 17 16 22 22 H 1.08999 * 110.45920 * 52.40010 * 21 20 17 23 23 C 1.54503 * 110.51085 * 175.00488 * 21 20 17 24 24 C 1.54482 * 104.06705 * 118.64294 * 23 21 20 25 25 O 1.44427 * 104.79789 * 23.98239 * 24 23 21 26 26 C 1.44422 * 105.27659 * 319.48493 * 25 24 23 27 27 C 1.39038 * 119.94797 * 0.02562 * 13 12 11 28 28 H 0.96998 * 119.99202 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.97732 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.79579 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.81630 * 179.97438 * 12 11 10 32 32 H 0.96999 * 119.99925 * 0.02562 * 16 14 13 33 33 H 1.08992 * 109.47054 * 300.00495 * 20 17 16 34 34 H 1.09002 * 109.46333 * 60.00395 * 20 17 16 35 35 H 1.09006 * 110.51182 * 237.28924 * 23 21 20 36 36 H 1.09010 * 110.51307 * 359.97438 * 23 21 20 37 37 H 1.09005 * 110.37124 * 142.80418 * 24 23 21 38 38 H 1.08988 * 110.37364 * 265.14601 * 24 23 21 39 39 H 1.08999 * 110.37320 * 281.68657 * 26 25 24 40 40 H 1.09000 * 110.37565 * 159.34661 * 26 25 24 41 41 H 1.07996 * 120.19811 * 179.72824 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7024 1.3461 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8837 2.3964 1.2124 7 6 2.0079 -1.2120 0.0005 8 1 3.0517 -1.2331 -0.2758 9 6 1.3480 -2.4093 0.3631 10 6 1.8169 -3.6482 -0.1139 11 6 1.1719 -4.8122 0.2404 12 6 0.0613 -4.7744 1.0648 13 6 -0.4191 -3.5530 1.5485 14 6 -1.6063 -3.5213 2.4295 15 8 -2.0236 -2.4596 2.8491 16 7 -2.2257 -4.6697 2.7672 17 16 -3.5556 -4.6342 3.7534 18 8 -3.9140 -6.0006 3.9078 19 8 -3.1448 -3.8542 4.8679 20 6 -4.8121 -3.7517 2.7874 21 6 -6.1043 -3.6531 3.6005 22 1 -5.9030 -3.2339 4.5864 23 6 -7.1510 -2.7978 2.8521 24 6 -8.3280 -3.7694 2.6129 25 8 -8.1900 -4.7759 3.6394 26 6 -6.7728 -5.0402 3.7251 27 6 0.2206 -2.3687 1.2002 28 1 -0.4849 0.8401 -0.0004 29 1 2.6829 -3.6856 -0.7581 30 1 1.5348 -5.7603 -0.1282 31 1 -0.4375 -5.6932 1.3363 32 1 -1.8925 -5.5170 2.4327 33 1 -4.4526 -2.7499 2.5528 34 1 -5.0060 -4.2942 1.8620 35 1 -7.4689 -1.9572 3.4689 36 1 -6.7476 -2.4449 1.9028 37 1 -9.2788 -3.2470 2.7191 38 1 -8.2512 -4.2223 1.6245 39 1 -6.4575 -5.6881 2.9073 40 1 -6.5288 -5.4941 4.6856 41 1 -0.1494 -1.4230 1.5677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762134854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:16 Heat of formation + Delta-G solvation = -161.579544 kcal Electronic energy + Delta-G solvation = -27121.689885 eV Core-core repulsion = 23092.400510 eV Total energy + Delta-G solvation = -4029.289375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.32614 -40.53543 -39.00846 -38.34616 -37.32950 -35.90369 -35.33277 -34.94561 -31.99437 -31.33258 -30.88463 -27.91153 -27.26857 -25.21901 -23.93672 -22.89921 -21.96338 -21.81751 -20.74636 -19.83471 -19.14213 -18.28180 -17.90081 -17.36978 -17.18173 -16.74713 -16.50379 -16.45958 -16.25388 -16.04676 -15.95005 -15.19118 -15.08528 -14.68427 -14.34558 -14.04437 -13.85691 -13.79411 -13.52837 -13.47595 -13.37453 -13.31868 -13.00031 -12.81633 -12.57839 -12.46608 -12.33809 -12.20725 -12.15021 -12.04542 -11.82268 -11.53912 -11.43939 -11.14236 -11.09204 -10.86424 -9.59077 -9.42101 -8.68714 -6.39136 -1.13185 0.10468 0.97490 1.18231 1.38732 1.44830 1.53430 1.73281 2.19250 2.42609 2.72126 2.81194 2.94468 3.17843 3.40735 3.52082 3.59849 3.65131 3.93203 3.94036 4.04310 4.24798 4.27725 4.38855 4.48836 4.55045 4.63516 4.72523 4.81475 4.85449 4.93454 5.01464 5.04652 5.12776 5.28426 5.46154 5.57737 5.69281 5.81840 5.90870 6.03565 6.25633 6.50736 6.56506 6.87287 6.90157 8.28716 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.003081 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.123654 B = 9084.425848 C =10166.214490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.033 3.967 3 Si 0.979 3.021 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.271 1.271 7 C -0.494 4.494 8 H 0.083 0.917 9 C 0.066 3.934 10 C -0.208 4.208 11 C -0.095 4.095 12 C -0.195 4.195 13 C -0.147 4.147 14 C 0.590 3.410 15 O -0.533 6.533 16 N -1.039 6.039 17 S 2.595 3.405 18 O -0.950 6.950 19 O -0.974 6.974 20 C -0.597 4.597 21 C -0.121 4.121 22 H 0.097 0.903 23 C -0.142 4.142 24 C 0.037 3.963 25 O -0.389 6.389 26 C 0.027 3.973 27 C -0.122 4.122 28 H 0.288 0.712 29 H 0.110 0.890 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.445 0.555 33 H 0.146 0.854 34 H 0.171 0.829 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.970 -7.697 0.947 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.183 4.183 3 Si 0.800 3.200 4 H -0.178 1.178 5 H -0.189 1.189 6 H -0.196 1.196 7 C -0.523 4.523 8 H 0.101 0.899 9 C 0.063 3.937 10 C -0.228 4.228 11 C -0.113 4.113 12 C -0.214 4.214 13 C -0.152 4.152 14 C 0.382 3.618 15 O -0.409 6.409 16 N -0.804 5.804 17 S 2.693 3.307 18 O -0.940 6.940 19 O -0.965 6.965 20 C -0.730 4.730 21 C -0.141 4.141 22 H 0.115 0.885 23 C -0.181 4.181 24 C -0.039 4.039 25 O -0.308 6.308 26 C -0.050 4.050 27 C -0.142 4.142 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.286 0.714 33 H 0.164 0.836 34 H 0.189 0.811 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.640 -7.279 2.234 14.756 hybrid contribution 0.696 1.010 -0.783 1.455 sum -11.943 -6.270 1.450 13.567 Atomic orbital electron populations 1.69839 1.08991 1.30643 1.35272 1.26762 0.95470 1.04672 0.91364 0.85193 0.79653 0.76395 0.78759 1.17754 1.18875 1.19623 1.19881 0.98361 0.92062 1.42006 0.89862 1.17939 0.91844 0.93930 0.89955 1.21485 1.03640 0.92835 1.04850 1.20951 0.95212 0.97859 0.97293 1.20937 1.00553 0.95270 1.04681 1.19582 0.97043 0.96003 1.02551 1.18621 0.83235 0.81992 0.77992 1.90844 1.66112 1.30448 1.53513 1.54727 1.45319 1.16422 1.63962 1.05567 0.75316 0.74838 0.74951 1.93622 1.83058 1.32126 1.85233 1.93606 1.80153 1.72883 1.49828 1.30459 1.11234 1.16641 1.14637 1.22412 0.92972 0.98736 0.99998 0.88497 1.23049 0.94263 0.98806 1.02008 1.23700 0.99841 0.88444 0.91932 1.89121 1.23068 1.60028 1.58586 1.23942 0.81620 0.95063 1.04393 1.21520 0.97939 0.96400 0.98366 0.90132 0.87194 0.84098 0.84013 0.71411 0.83559 0.81085 0.89105 0.88503 0.87084 0.90552 0.89601 0.88205 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.57 10.96 21.83 0.24 -42.33 16 2 C 0.03 1.61 5.15 85.26 0.44 2.05 16 3 Si 0.98 37.66 29.59 68.60 2.03 39.69 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.49 -25.39 9.05 23.47 0.21 -25.17 16 8 H 0.08 4.07 7.90 -2.91 -0.02 4.05 16 9 C 0.07 3.33 5.57 -21.32 -0.12 3.21 16 10 C -0.21 -9.00 9.78 22.77 0.22 -8.77 16 11 C -0.10 -3.42 10.01 22.18 0.22 -3.19 16 12 C -0.19 -6.84 9.55 22.70 0.22 -6.62 16 13 C -0.15 -6.26 5.87 -20.13 -0.12 -6.37 16 14 C 0.59 22.81 7.51 86.80 0.65 23.46 16 15 O -0.53 -23.86 14.43 12.51 0.18 -23.68 16 16 N -1.04 -29.35 5.55 -175.57 -0.98 -30.33 16 17 S 2.59 70.40 4.94 -56.49 -0.28 70.12 16 18 O -0.95 -25.31 17.27 -127.65 -2.20 -27.52 16 19 O -0.97 -35.95 17.04 -120.72 -2.06 -38.00 16 20 C -0.60 -12.31 5.08 71.98 0.37 -11.94 16 21 C -0.12 -2.35 3.11 -9.78 -0.03 -2.38 16 22 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 23 C -0.14 -2.22 6.74 31.61 0.21 -2.01 16 24 C 0.04 0.55 7.63 72.49 0.55 1.10 16 25 O -0.39 -8.16 11.65 -148.98 -1.74 -9.90 16 26 C 0.03 0.52 6.16 72.49 0.45 0.97 16 27 C -0.12 -6.21 8.24 23.01 0.19 -6.02 16 28 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 29 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 30 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 31 H 0.14 3.55 6.38 -2.91 -0.02 3.53 16 32 H 0.45 9.47 6.81 -96.75 -0.66 8.81 16 33 H 0.15 3.41 7.19 -2.39 -0.02 3.39 16 34 H 0.17 2.34 7.96 -2.39 -0.02 2.32 16 35 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.10 1.34 7.73 -2.38 -0.02 1.32 16 37 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 1.44 7.74 -2.39 -0.02 1.42 16 40 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.11 6.01 5.76 -2.91 -0.02 6.00 16 Total: -1.00 -70.88 354.79 -0.92 -71.80 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.42 Total: 31.86 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 3.46 Total: -41.71 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -0.74 Total: -72.66 kcal Atomic # 8 Polarization: -93.28 SS G_CDS: -5.82 Total: -99.10 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Atomic # 16 Polarization: 70.40 SS G_CDS: -0.28 Total: 70.12 kcal Total: -70.88 -0.92 -71.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762134854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.780 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds