Wall clock time and date at job start Tue Mar 31 2020 22:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30611 * 1 3 3 Si 1.86805 * 120.00235 * 2 1 4 4 H 1.48500 * 109.46961 * 87.51706 * 3 2 1 5 5 H 1.48501 * 109.47153 * 207.51627 * 3 2 1 6 6 H 1.48502 * 109.47033 * 327.51576 * 3 2 1 7 7 C 1.40300 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00189 * 10.91361 * 7 2 1 9 9 C 1.40868 * 119.99565 * 190.91640 * 7 2 1 10 10 C 1.40703 * 120.33245 * 35.77743 * 9 7 2 11 11 C 1.37595 * 119.88727 * 180.02562 * 10 9 7 12 12 C 1.38841 * 120.58422 * 359.97438 * 11 10 9 13 13 C 1.38206 * 120.67996 * 359.97438 * 12 11 10 14 14 C 1.39287 * 120.08582 * 359.71760 * 13 12 11 15 15 C 1.47288 * 120.28853 * 180.27525 * 14 13 12 16 16 O 1.21535 * 119.99738 * 176.79405 * 15 14 13 17 17 O 1.34804 * 120.00100 * 356.79696 * 15 14 13 18 18 C 1.45195 * 117.00093 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47471 * 179.97438 * 18 17 15 20 20 N 1.46498 * 109.46912 * 64.99522 * 19 18 17 21 21 C 1.47061 * 126.30529 * 274.69568 * 20 19 18 22 22 C 1.54325 * 109.97090 * 150.90586 * 21 20 19 23 23 C 1.55605 * 104.19076 * 45.50162 * 22 21 20 24 24 S 1.67008 * 126.29826 * 95.00482 * 20 19 18 25 25 O 1.42108 * 105.13243 * 298.89237 * 24 20 19 26 26 O 1.42101 * 105.13402 * 68.56370 * 24 20 19 27 27 H 0.97008 * 119.99975 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.05996 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.71108 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.65978 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.95441 * 180.02562 * 13 12 11 32 32 H 1.08997 * 109.47454 * 300.00384 * 18 17 15 33 33 H 1.09010 * 109.47469 * 59.99840 * 18 17 15 34 34 H 1.08992 * 109.47512 * 184.99982 * 19 18 17 35 35 H 1.09005 * 109.46797 * 305.00110 * 19 18 17 36 36 H 1.09005 * 109.35414 * 271.17949 * 21 20 19 37 37 H 1.08994 * 109.35750 * 30.82638 * 21 20 19 38 38 H 1.09006 * 110.64649 * 286.77060 * 22 21 20 39 39 H 1.08992 * 110.38525 * 164.11210 * 22 21 20 40 40 H 1.08997 * 111.16646 * 204.06041 * 23 22 21 41 41 H 1.09002 * 111.16329 * 79.79409 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4352 2.0767 1.3988 5 1 3.5630 1.4255 -0.6468 6 1 1.4649 2.6370 -0.7519 7 6 2.0075 -1.2151 -0.0005 8 1 1.4822 -2.1418 -0.1780 9 6 3.3971 -1.2262 0.2305 10 6 3.9739 -0.3186 1.1379 11 6 5.3322 -0.3371 1.3562 12 6 6.1427 -1.2455 0.6886 13 6 5.6012 -2.1483 -0.2069 14 6 4.2288 -2.1585 -0.4444 15 6 3.6463 -3.1226 -1.3933 16 8 2.4423 -3.1662 -1.5531 17 8 4.4486 -3.9568 -2.0845 18 6 3.8055 -4.8808 -3.0015 19 6 4.8687 -5.7390 -3.6899 20 7 5.5355 -6.5819 -2.6945 21 6 6.6779 -6.1968 -1.8522 22 6 6.6358 -6.9738 -0.5195 23 6 6.3301 -8.4398 -0.9421 24 16 5.1429 -8.1596 -2.3124 25 8 3.8065 -8.1035 -1.8325 26 8 5.4944 -8.9181 -3.4615 27 1 -0.4850 0.8401 0.0004 28 1 3.3515 0.3920 1.6615 29 1 5.7720 0.3611 2.0529 30 1 7.2072 -1.2467 0.8710 31 1 6.2425 -2.8500 -0.7195 32 1 3.1209 -5.5240 -2.4486 33 1 3.2497 -4.3195 -3.7528 34 1 4.3952 -6.3702 -4.4419 35 1 5.6035 -5.0920 -4.1690 36 1 7.6061 -6.4238 -2.3766 37 1 6.6318 -5.1271 -1.6481 38 1 5.8444 -6.5898 0.1244 39 1 7.6004 -6.9156 -0.0155 40 1 5.8665 -8.9958 -0.1272 41 1 7.2295 -8.9427 -1.2973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773127462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:56 Heat of formation + Delta-G solvation = -148.647452 kcal Electronic energy + Delta-G solvation = -27703.437849 eV Core-core repulsion = 23674.709252 eV Total energy + Delta-G solvation = -4028.728597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.19621 -39.30444 -38.31880 -38.09952 -37.13043 -36.88354 -35.58253 -34.42223 -32.37362 -32.02533 -30.20118 -27.45765 -26.92892 -24.89919 -23.71587 -23.02938 -22.82984 -21.40369 -19.92821 -19.47957 -18.69727 -18.25271 -17.86094 -17.60335 -17.24927 -16.86328 -16.71852 -15.85256 -15.80942 -15.60435 -15.50531 -15.23416 -14.75978 -14.57237 -14.35695 -14.20158 -14.00532 -13.87688 -13.59511 -13.29391 -13.25457 -13.14064 -13.07236 -12.72997 -12.58104 -12.44113 -12.28194 -12.24981 -12.07716 -12.00639 -11.63325 -11.51953 -11.35868 -11.10730 -10.73108 -9.96831 -9.60338 -9.47743 -8.89988 -6.57987 -0.76038 0.20539 0.84103 1.23394 1.36880 1.46575 1.51271 1.94003 1.99271 2.08874 2.62752 2.64266 3.05709 3.36922 3.46947 3.64269 3.89887 3.93782 4.09318 4.15305 4.27904 4.30108 4.37839 4.44849 4.56472 4.60669 4.70757 4.73572 4.81819 4.90666 4.96715 4.98525 5.11607 5.17644 5.27189 5.40482 5.59545 5.62706 5.69656 5.87149 5.93667 6.24699 6.41040 6.68127 6.72916 7.25066 8.14520 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.003330 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.881446 B = 8407.172790 C = 9210.375623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.037 3.963 3 Si 0.970 3.030 4 H -0.243 1.243 5 H -0.246 1.246 6 H -0.279 1.279 7 C -0.453 4.453 8 H 0.070 0.930 9 C 0.104 3.896 10 C -0.248 4.248 11 C -0.052 4.052 12 C -0.231 4.231 13 C -0.017 4.017 14 C -0.260 4.260 15 C 0.496 3.504 16 O -0.550 6.550 17 O -0.344 6.344 18 C 0.036 3.964 19 C 0.169 3.831 20 N -0.992 5.992 21 C 0.069 3.931 22 C -0.127 4.127 23 C -0.555 4.555 24 S 2.546 3.454 25 O -1.013 7.013 26 O -0.996 6.996 27 H 0.296 0.704 28 H 0.106 0.894 29 H 0.142 0.858 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.477 -9.709 -1.392 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.178 4.178 3 Si 0.791 3.209 4 H -0.167 1.167 5 H -0.170 1.170 6 H -0.206 1.206 7 C -0.481 4.481 8 H 0.088 0.912 9 C 0.100 3.900 10 C -0.267 4.267 11 C -0.070 4.070 12 C -0.249 4.249 13 C -0.035 4.035 14 C -0.262 4.262 15 C 0.347 3.653 16 O -0.443 6.443 17 O -0.262 6.262 18 C -0.040 4.040 19 C 0.045 3.955 20 N -0.833 5.833 21 C -0.056 4.056 22 C -0.167 4.167 23 C -0.691 4.691 24 S 2.648 3.352 25 O -1.002 7.002 26 O -0.985 6.985 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.159 0.841 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.167 0.833 40 H 0.176 0.824 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 19.052 -10.217 -2.032 21.714 hybrid contribution -1.025 0.630 0.179 1.216 sum 18.027 -9.588 -1.853 20.502 Atomic orbital electron populations 1.69619 1.09706 1.31772 1.35641 1.27204 0.95575 1.04711 0.90357 0.85450 0.79486 0.75419 0.80498 1.16750 1.16976 1.20571 1.20041 0.92694 0.95742 1.39637 0.91192 1.17762 0.92296 0.90783 0.89140 1.21221 0.96654 1.04990 1.03788 1.21340 0.92268 0.96702 0.96654 1.21003 1.00403 1.00310 1.03195 1.21318 0.91819 0.96080 0.94301 1.19052 0.95073 1.05747 1.06372 1.21579 0.84719 0.79577 0.79418 1.90806 1.17821 1.69506 1.66176 1.86474 1.40289 1.46421 1.53031 1.23773 0.97230 0.90972 0.92041 1.21175 0.94094 0.92303 0.87971 1.57071 1.44594 1.31126 1.50532 1.22470 0.89098 1.03880 0.90192 1.22851 1.07749 0.88745 0.97307 1.30630 1.16383 1.06097 1.15942 1.06904 0.76147 0.74149 0.77995 1.93585 1.38084 1.85935 1.82601 1.93555 1.84907 1.70707 1.49356 0.89313 0.87645 0.84072 0.83246 0.83834 0.93607 0.90943 0.87184 0.86264 0.87548 0.88441 0.90329 0.83301 0.82382 0.80610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.34 13.92 21.88 0.30 -48.03 16 2 C 0.04 2.04 5.47 85.38 0.47 2.51 16 3 Si 0.97 42.25 24.51 68.60 1.68 43.94 16 4 H -0.24 -9.53 6.74 99.48 0.67 -8.86 16 5 H -0.25 -10.73 6.75 99.48 0.67 -10.05 16 6 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.45 -26.92 8.32 23.42 0.19 -26.73 16 8 H 0.07 4.79 5.95 -2.91 -0.02 4.77 16 9 C 0.10 5.34 5.04 -21.10 -0.11 5.23 16 10 C -0.25 -10.88 7.02 22.72 0.16 -10.73 16 11 C -0.05 -1.78 10.01 22.26 0.22 -1.56 16 12 C -0.23 -7.14 10.03 22.41 0.22 -6.92 16 13 C -0.02 -0.60 9.60 22.51 0.22 -0.38 16 14 C -0.26 -12.01 5.92 -19.71 -0.12 -12.13 16 15 C 0.50 23.72 7.86 70.20 0.55 24.27 16 16 O -0.55 -31.57 13.32 19.72 0.26 -31.31 16 17 O -0.34 -12.62 8.47 -57.15 -0.48 -13.10 16 18 C 0.04 1.18 5.82 71.98 0.42 1.60 16 19 C 0.17 3.75 6.75 86.38 0.58 4.33 16 20 N -0.99 -20.58 3.27 -512.04 -1.68 -22.26 16 21 C 0.07 0.92 6.71 86.72 0.58 1.50 16 22 C -0.13 -1.31 6.81 31.94 0.22 -1.09 16 23 C -0.56 -5.35 7.51 72.88 0.55 -4.81 16 24 S 2.55 56.24 6.17 -56.49 -0.35 55.89 16 25 O -1.01 -33.42 18.14 -127.77 -2.32 -35.74 16 26 O -1.00 -27.01 18.14 -127.77 -2.32 -29.33 16 27 H 0.30 15.09 8.29 -92.70 -0.77 14.32 16 28 H 0.11 4.59 4.95 -2.91 -0.01 4.58 16 29 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.14 3.91 7.61 -2.91 -0.02 3.89 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.11 0.76 8.14 -2.38 -0.02 0.75 16 37 H 0.10 1.52 7.30 -2.39 -0.02 1.50 16 38 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.18 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -86.66 352.87 0.25 -86.41 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.99 Total: 18.43 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 4.16 Total: -24.89 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -1.37 Total: -70.29 kcal Atomic # 8 Polarization: -104.63 SS G_CDS: -4.86 Total: -109.48 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.68 Total: 43.94 kcal Atomic # 16 Polarization: 56.24 SS G_CDS: -0.35 Total: 55.89 kcal Total: -86.66 0.25 -86.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773127462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.237 kcal (2) G-P(sol) polarization free energy of solvation -86.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds