Wall clock time and date at job start Tue Mar 31 2020 22:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48501 * 109.47135 * 269.99528 * 3 2 1 5 5 H 1.48496 * 109.47616 * 29.99812 * 3 2 1 6 6 H 1.48500 * 109.47212 * 149.99998 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99786 * 197.84555 * 7 2 1 9 9 C 1.41441 * 120.00330 * 17.85009 * 7 2 1 10 10 C 1.40789 * 120.17571 * 204.37113 * 9 7 2 11 11 C 1.37715 * 120.04981 * 179.97438 * 10 9 7 12 12 C 1.38356 * 120.41796 * 0.04499 * 11 10 9 13 13 C 1.39926 * 120.35732 * 359.97438 * 12 11 10 14 14 C 1.47762 * 120.03394 * 180.02562 * 13 12 11 15 15 O 1.21473 * 120.00104 * 179.97438 * 14 13 12 16 16 O 1.34702 * 120.00129 * 359.97295 * 14 13 12 17 17 C 1.45201 * 117.00072 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47138 * 180.02562 * 17 16 14 19 19 N 1.46502 * 109.47049 * 65.00138 * 18 17 16 20 20 C 1.47060 * 126.30160 * 274.69025 * 19 18 17 21 21 C 1.54324 * 109.96924 * 150.90432 * 20 19 18 22 22 C 1.55607 * 104.18921 * 45.50591 * 21 20 19 23 23 S 1.67000 * 126.30021 * 95.00266 * 19 18 17 24 24 O 1.42100 * 105.13243 * 298.89425 * 23 19 18 25 25 O 1.42100 * 105.13308 * 68.56295 * 23 19 18 26 26 C 1.39087 * 119.93599 * 0.02562 * 13 12 11 27 27 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.97375 * 0.04741 * 10 9 7 29 29 H 1.07998 * 119.78976 * 180.02562 * 11 10 9 30 30 H 1.08007 * 119.82062 * 180.02562 * 12 11 10 31 31 H 1.08995 * 109.47556 * 300.00605 * 17 16 14 32 32 H 1.09004 * 109.46889 * 60.00709 * 17 16 14 33 33 H 1.08996 * 109.47423 * 185.00436 * 18 17 16 34 34 H 1.09009 * 109.47133 * 305.00423 * 18 17 16 35 35 H 1.09007 * 109.35932 * 271.18320 * 20 19 18 36 36 H 1.08995 * 109.36082 * 30.82589 * 20 19 18 37 37 H 1.09000 * 110.64944 * 286.77450 * 21 20 19 38 38 H 1.09000 * 110.38464 * 164.10416 * 21 20 19 39 39 H 1.08990 * 111.16874 * 204.05838 * 22 21 20 40 40 H 1.08999 * 111.16525 * 79.79196 * 22 21 20 41 41 H 1.07996 * 120.20704 * 179.72484 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2872 9 6 1.3517 -2.4075 -0.3744 10 6 1.8271 -3.6501 0.0863 11 6 1.1860 -4.8125 -0.2799 12 6 0.0736 -4.7700 -1.1015 13 6 -0.4133 -3.5446 -1.5697 14 6 -1.6022 -3.5075 -2.4464 15 8 -2.0247 -2.4433 -2.8521 16 8 -2.2175 -4.6537 -2.7958 17 6 -3.3797 -4.5414 -3.6589 18 6 -3.9395 -5.9364 -3.9445 19 7 -4.4369 -6.5273 -2.6996 20 6 -3.6416 -7.2675 -1.7086 21 6 -4.2576 -7.0960 -0.3040 22 6 -5.7819 -7.3163 -0.5266 23 16 -6.0129 -6.4906 -2.1484 24 8 -6.3170 -5.1121 -1.9857 25 8 -6.7399 -7.3163 -3.0478 26 6 0.2228 -2.3615 -1.2091 27 1 -0.4850 0.8400 -0.0004 28 1 2.6946 -3.6915 0.7283 29 1 1.5540 -5.7634 0.0762 30 1 -0.4220 -5.6876 -1.3824 31 1 -4.1419 -3.9385 -3.1654 32 1 -3.0914 -4.0663 -4.5966 33 1 -4.7563 -5.8603 -4.6623 34 1 -3.1514 -6.5669 -4.3564 35 1 -3.6276 -8.3249 -1.9732 36 1 -2.6214 -6.8839 -1.7046 37 1 -4.0694 -6.0928 0.0784 38 1 -3.8599 -7.8464 0.3792 39 1 -6.3679 -6.8270 0.2512 40 1 -6.0212 -8.3779 -0.5878 41 1 -0.1467 -1.4136 -1.5715 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773138640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:01 Heat of formation + Delta-G solvation = -130.032579 kcal Electronic energy + Delta-G solvation = -27281.170029 eV Core-core repulsion = 23253.248633 eV Total energy + Delta-G solvation = -4027.921396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.77010 -37.74727 -37.27523 -37.17026 -36.09951 -35.70637 -33.83430 -33.57021 -30.50435 -29.57410 -29.23513 -26.32435 -25.43282 -23.86471 -22.44039 -22.11178 -21.02910 -19.85641 -19.06348 -17.92069 -17.47325 -17.12285 -16.51859 -16.12365 -15.83698 -15.79451 -15.01828 -14.89638 -14.71313 -14.63383 -14.13337 -13.69716 -13.55926 -13.33577 -13.17720 -12.81214 -12.64627 -12.58536 -12.26333 -12.20668 -12.11223 -11.71202 -11.69141 -11.54157 -11.28366 -11.19848 -11.11183 -10.79590 -10.74896 -10.55543 -10.20819 -10.18158 -9.77521 -9.53017 -9.28243 -9.16307 -7.78704 -7.60783 -6.86752 -4.48140 0.00523 1.96148 2.28344 2.74189 3.04463 3.07682 3.10487 3.21291 3.38068 3.59064 3.69702 3.87262 4.04236 4.28050 4.53985 4.61619 4.70359 4.86064 5.11006 5.11515 5.21132 5.32939 5.38921 5.49814 5.50726 5.66035 5.70504 5.77947 5.93868 6.08566 6.33461 6.36341 6.60251 6.89119 6.91564 6.98663 7.13001 7.26392 7.63260 7.70681 7.86726 8.06173 8.40196 8.55830 8.72843 8.74715 10.08397 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.002851 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.564297 B = 9819.124990 C =10270.448787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.096 3.904 10 C -0.204 4.204 11 C -0.103 4.103 12 C -0.196 4.196 13 C -0.113 4.113 14 C 0.509 3.491 15 O -0.516 6.516 16 O -0.352 6.352 17 C 0.037 3.963 18 C 0.164 3.836 19 N -0.987 5.987 20 C 0.078 3.922 21 C -0.126 4.126 22 C -0.596 4.596 23 S 2.566 3.434 24 O -0.954 6.954 25 O -0.963 6.963 26 C -0.090 4.090 27 H 0.286 0.714 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 -14.162 -2.039 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.094 3.906 10 C -0.223 4.223 11 C -0.121 4.121 12 C -0.216 4.216 13 C -0.114 4.114 14 C 0.356 3.644 15 O -0.406 6.406 16 O -0.269 6.269 17 C -0.039 4.039 18 C 0.040 3.960 19 N -0.828 5.828 20 C -0.048 4.048 21 C -0.165 4.165 22 C -0.727 4.727 23 S 2.662 3.338 24 O -0.943 6.943 25 O -0.952 6.952 26 C -0.110 4.110 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.234 -13.265 -2.735 16.392 hybrid contribution 0.595 0.577 0.521 0.979 sum -8.638 -12.688 -2.214 15.508 Atomic orbital electron populations 1.69775 1.07613 1.29924 1.33571 1.25974 0.94781 1.01641 0.92242 0.86245 0.80351 0.80314 0.79478 1.19123 1.20190 1.18538 1.19593 0.98289 0.90956 1.40005 0.89919 1.17543 0.91095 0.92604 0.89358 1.21168 1.03238 0.92736 1.05204 1.20487 0.96137 0.96830 0.98655 1.20492 1.00314 0.95129 1.05673 1.18836 0.94847 0.95873 1.01879 1.21881 0.83076 0.81050 0.78379 1.90775 1.65099 1.31290 1.53404 1.86542 1.41577 1.35948 1.62870 1.23613 0.87343 0.98315 0.94655 1.21113 0.99599 0.92028 0.83256 1.57097 1.26747 1.69481 1.29496 1.22167 1.00018 0.96699 0.85931 1.22717 0.89866 1.06110 0.97799 1.30819 1.05836 1.14094 1.21956 1.06551 0.73593 0.75689 0.77941 1.93644 1.82973 1.31558 1.86144 1.93604 1.70616 1.70094 1.60911 1.21663 0.96517 0.96095 0.96706 0.90330 0.88416 0.88637 0.88060 0.90312 0.90482 0.88416 0.88903 0.90854 0.87440 0.88319 0.87095 0.84203 0.84220 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.37 10.96 55.55 0.61 -19.77 16 2 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 3 Si 0.91 18.40 29.59 -169.99 -5.03 13.37 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.73 9.05 -37.73 -0.34 -12.07 16 8 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 9 C 0.10 2.47 5.57 -106.87 -0.60 1.87 16 10 C -0.20 -4.63 9.78 -38.81 -0.38 -5.01 16 11 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 12 C -0.20 -4.03 9.62 -38.91 -0.37 -4.40 16 13 C -0.11 -2.63 5.87 -105.06 -0.62 -3.24 16 14 C 0.51 11.15 7.90 34.62 0.27 11.42 16 15 O -0.52 -12.66 16.12 -19.25 -0.31 -12.97 16 16 O -0.35 -6.12 8.46 -40.50 -0.34 -6.46 16 17 C 0.04 0.53 5.81 37.16 0.22 0.75 16 18 C 0.16 1.75 6.75 -4.04 -0.03 1.72 16 19 N -0.99 -10.60 3.27 -113.19 -0.37 -10.97 16 20 C 0.08 0.67 6.71 -3.04 -0.02 0.65 16 21 C -0.13 -0.94 6.81 -24.65 -0.17 -1.10 16 22 C -0.60 -4.04 7.51 38.55 0.29 -3.75 16 23 S 2.57 28.32 6.17 -107.50 -0.66 27.65 16 24 O -0.95 -14.46 18.13 -57.41 -1.04 -15.51 16 25 O -0.96 -12.94 18.13 -57.41 -1.04 -13.98 16 26 C -0.09 -2.35 8.23 -38.42 -0.32 -2.66 16 27 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 28 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 29 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.10 1.78 7.59 -52.48 -0.40 1.38 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.11 1.06 7.30 -51.93 -0.38 0.68 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.13 3.77 5.74 -52.49 -0.30 3.47 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -34.06 363.14 -10.54 -44.61 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.28 Total: 5.17 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.55 Total: -16.62 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.24 Total: -30.73 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -2.74 Total: -48.92 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Atomic # 16 Polarization: 28.32 SS G_CDS: -0.66 Total: 27.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.06 -10.54 -44.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773138640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.425 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds