Wall clock time and date at job start Tue Mar 31 2020 22:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48498 * 109.47091 * 270.00240 * 3 2 1 5 5 H 1.48505 * 109.47165 * 30.00283 * 3 2 1 6 6 H 1.48501 * 109.47167 * 150.00024 * 3 2 1 7 7 C 1.39946 * 119.99577 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99364 * 197.84451 * 7 2 1 9 9 C 1.41391 * 120.00390 * 17.84365 * 7 2 1 10 10 C 1.40708 * 120.24551 * 204.38383 * 9 7 2 11 11 C 1.37615 * 119.74958 * 180.02562 * 10 9 7 12 12 C 1.38643 * 120.24642 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.75101 * 179.97438 * 12 11 10 14 14 O 1.45203 * 109.46490 * 90.00049 * 13 12 11 15 15 C 1.34235 * 116.99527 * 179.97438 * 14 13 12 16 16 O 1.20828 * 120.00002 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99808 * 179.97438 * 15 14 13 18 18 N 1.46498 * 109.47193 * 180.02562 * 17 15 14 19 19 C 1.47067 * 126.30233 * 274.69763 * 18 17 15 20 20 C 1.54317 * 109.97286 * 150.90457 * 19 18 17 21 21 C 1.55601 * 104.18989 * 45.50032 * 20 19 18 22 22 S 1.67002 * 126.30153 * 95.00196 * 18 17 15 23 23 O 1.42095 * 105.13173 * 298.89246 * 22 18 17 24 24 O 1.42099 * 105.13294 * 68.56689 * 22 18 17 25 25 C 1.38637 * 120.49705 * 0.25174 * 12 11 10 26 26 C 1.37619 * 120.24795 * 359.44872 * 25 12 11 27 27 H 0.96998 * 119.99777 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.12704 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.88212 * 179.97438 * 11 10 9 30 30 H 1.08999 * 109.46963 * 330.00412 * 13 12 11 31 31 H 1.08999 * 109.46898 * 209.99809 * 13 12 11 32 32 H 1.08992 * 109.47537 * 300.00669 * 17 15 14 33 33 H 1.09006 * 109.46661 * 60.00613 * 17 15 14 34 34 H 1.09005 * 109.35467 * 271.18170 * 19 18 17 35 35 H 1.08997 * 109.36088 * 30.81724 * 19 18 17 36 36 H 1.09007 * 110.64526 * 286.77118 * 20 19 18 37 37 H 1.08995 * 110.38690 * 164.10823 * 20 19 18 38 38 H 1.09009 * 111.16410 * 204.06362 * 21 20 19 39 39 H 1.09006 * 111.16593 * 79.80098 * 21 20 19 40 40 H 1.08004 * 119.87186 * 179.70394 * 25 12 11 41 41 H 1.08002 * 120.12601 * 180.27525 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3763 10 6 1.8257 -3.6499 0.0824 11 6 1.1798 -4.8065 -0.2900 12 6 0.0665 -4.7502 -1.1144 13 6 -0.6319 -6.0238 -1.5158 14 8 -1.6657 -6.3354 -0.5449 15 6 -2.3869 -7.4473 -0.7584 16 8 -2.1614 -8.1375 -1.7242 17 6 -3.4769 -7.8353 0.2072 18 7 -4.1098 -9.0771 -0.2440 19 6 -5.2061 -9.1918 -1.2176 20 6 -5.1143 -10.5426 -1.9581 21 6 -4.8506 -11.5797 -0.8285 22 16 -3.7238 -10.6225 0.2577 23 8 -2.3661 -10.8066 -0.1190 24 8 -4.1394 -10.6865 1.6150 25 6 -0.4056 -3.5315 -1.5770 26 6 0.2210 -2.3618 -1.2123 27 1 -0.4850 0.8400 0.0004 28 1 2.6931 -3.6961 0.7244 29 1 1.5418 -5.7618 0.0605 30 1 0.0908 -6.8389 -1.5512 31 1 -1.0839 -5.8958 -2.4994 32 1 -3.0482 -7.9856 1.1979 33 1 -4.2230 -7.0418 0.2507 34 1 -6.1609 -9.1270 -0.6957 35 1 -5.1346 -8.3785 -1.9398 36 1 -4.2884 -10.5355 -2.6694 37 1 -6.0537 -10.7620 -2.4654 38 1 -4.3583 -12.4704 -1.2190 39 1 -5.7731 -11.8383 -0.3084 40 1 -1.2708 -3.4998 -2.2226 41 1 -0.1511 -1.4132 -1.5701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776109870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:26 Heat of formation + Delta-G solvation = -124.338739 kcal Electronic energy + Delta-G solvation = -26364.338356 eV Core-core repulsion = 22336.663864 eV Total energy + Delta-G solvation = -4027.674493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10503 -37.87000 -37.42754 -37.25502 -36.15574 -35.88114 -33.86523 -33.51042 -30.83850 -29.36896 -28.64410 -27.08145 -26.06178 -23.80006 -22.55794 -21.14832 -21.04790 -20.03128 -19.14452 -17.80456 -17.48724 -17.38489 -17.17981 -16.27080 -16.10256 -15.75310 -15.35693 -15.05115 -14.83435 -14.37522 -13.99942 -13.95819 -13.73383 -13.58438 -13.22595 -12.76044 -12.43773 -12.33223 -12.30695 -12.16277 -12.02463 -11.99424 -11.92260 -11.72352 -11.37083 -11.19267 -10.99433 -10.87901 -10.82606 -10.50526 -10.40516 -10.11831 -9.73294 -9.47172 -9.37935 -9.21030 -7.55786 -7.44291 -6.86436 -4.46039 -0.12917 2.04086 2.44766 2.49335 2.96567 3.01074 3.03797 3.06002 3.27400 3.38329 3.52044 3.85931 3.91220 4.11625 4.44773 4.51387 4.51841 4.88914 4.94176 5.06339 5.09972 5.17689 5.23006 5.44034 5.48699 5.62508 5.70215 5.72556 5.99194 6.12582 6.26793 6.32242 6.86750 6.90151 6.98122 7.19109 7.27235 7.52357 7.74940 7.96372 8.01709 8.09371 8.19917 8.54424 8.79091 8.87338 10.07376 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.030732 B = 0.002036 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.887499 B =13746.431958 C =13887.954770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.236 4.236 13 C 0.137 3.863 14 O -0.351 6.351 15 C 0.427 3.573 16 O -0.502 6.502 17 C 0.167 3.833 18 N -0.977 5.977 19 C 0.081 3.919 20 C -0.124 4.124 21 C -0.596 4.596 22 S 2.568 3.432 23 O -0.942 6.942 24 O -0.955 6.955 25 C -0.076 4.076 26 C -0.171 4.171 27 H 0.282 0.718 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.088 0.912 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.781 -16.447 -2.771 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.249 4.249 11 C -0.082 4.082 12 C -0.237 4.237 13 C 0.065 3.935 14 O -0.267 6.267 15 C 0.267 3.733 16 O -0.390 6.390 17 C 0.040 3.960 18 N -0.818 5.818 19 C -0.045 4.045 20 C -0.164 4.164 21 C -0.727 4.727 22 S 2.664 3.336 23 O -0.931 6.931 24 O -0.945 6.945 25 C -0.094 4.094 26 C -0.190 4.190 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.106 0.894 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.158 -16.643 -2.308 21.342 hybrid contribution -0.127 0.726 -0.649 0.982 sum -13.286 -15.917 -2.957 20.943 Atomic orbital electron populations 1.69832 1.07665 1.29486 1.34014 1.25976 0.94771 1.01536 0.92142 0.86264 0.80508 0.80298 0.79412 1.19173 1.20221 1.18513 1.19685 0.98251 0.91234 1.39312 0.90155 1.17687 0.90817 0.92082 0.87892 1.20971 1.04125 0.92674 1.07145 1.20413 0.95090 0.96700 0.95990 1.18692 1.01254 0.91962 1.11784 1.21723 0.86538 0.95951 0.89277 1.86710 1.46055 1.40802 1.53158 1.24347 0.82861 0.79616 0.86458 1.90625 1.66886 1.51735 1.29709 1.20428 0.93317 0.86636 0.95589 1.56967 1.46903 1.21260 1.56622 1.22142 0.90078 0.99362 0.92944 1.22687 1.06351 0.90424 0.96895 1.30834 1.17091 1.10956 1.13829 1.06609 0.75947 0.75580 0.75506 1.93670 1.31678 1.84257 1.83481 1.93629 1.83452 1.85295 1.32097 1.20528 0.97674 0.92456 0.98761 1.21292 0.99717 0.96645 1.01361 0.90657 0.88699 0.89235 0.92035 0.92122 0.86162 0.85828 0.90200 0.88710 0.88268 0.87177 0.84077 0.84085 0.89374 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.76 10.95 55.55 0.61 -19.16 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.14 29.60 -169.99 -5.03 13.11 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.83 9.05 -37.74 -0.34 -12.17 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.12 3.10 5.57 -106.83 -0.60 2.50 16 10 C -0.23 -5.61 9.80 -38.88 -0.38 -5.99 16 11 C -0.06 -1.44 9.67 -39.66 -0.38 -1.82 16 12 C -0.24 -5.23 5.54 -104.33 -0.58 -5.81 16 13 C 0.14 2.64 5.58 36.01 0.20 2.85 16 14 O -0.35 -6.42 10.20 -39.27 -0.40 -6.82 16 15 C 0.43 6.74 8.03 36.01 0.29 7.03 16 16 O -0.50 -8.97 16.18 -18.75 -0.30 -9.27 16 17 C 0.17 1.85 6.94 -5.19 -0.04 1.81 16 18 N -0.98 -9.73 2.80 -114.48 -0.32 -10.05 16 19 C 0.08 0.51 6.83 -3.04 -0.02 0.49 16 20 C -0.12 -0.62 6.81 -24.66 -0.17 -0.79 16 21 C -0.60 -3.05 7.51 38.54 0.29 -2.76 16 22 S 2.57 26.62 6.17 -107.50 -0.66 25.95 16 23 O -0.94 -14.12 18.13 -57.41 -1.04 -15.16 16 24 O -0.96 -12.31 18.13 -57.41 -1.04 -13.35 16 25 C -0.08 -1.75 9.67 -39.66 -0.38 -2.13 16 26 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 27 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 28 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 29 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 31 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 32 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.14 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 41 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -34.98 366.15 -10.57 -45.55 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.36 Total: 3.43 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.54 Total: -19.75 kcal Atomic # 7 Polarization: -29.49 SS G_CDS: 0.29 Total: -29.20 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -2.79 Total: -44.60 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: 26.62 SS G_CDS: -0.66 Total: 25.95 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.98 -10.57 -45.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776109870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.784 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds