Wall clock time and date at job start Tue Mar 31 2020 22:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48498 * 109.47091 * 270.00240 * 3 2 1 5 5 H 1.48505 * 109.47165 * 30.00283 * 3 2 1 6 6 H 1.48501 * 109.47167 * 150.00024 * 3 2 1 7 7 C 1.39946 * 119.99577 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99364 * 197.84451 * 7 2 1 9 9 C 1.41391 * 120.00390 * 17.84365 * 7 2 1 10 10 C 1.40708 * 120.24551 * 204.38383 * 9 7 2 11 11 C 1.37615 * 119.74958 * 180.02562 * 10 9 7 12 12 C 1.38643 * 120.24642 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.75101 * 179.97438 * 12 11 10 14 14 O 1.45203 * 109.46490 * 90.00049 * 13 12 11 15 15 C 1.34235 * 116.99527 * 179.97438 * 14 13 12 16 16 O 1.20828 * 120.00002 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99808 * 179.97438 * 15 14 13 18 18 N 1.46498 * 109.47193 * 180.02562 * 17 15 14 19 19 C 1.47067 * 126.30233 * 274.69763 * 18 17 15 20 20 C 1.54317 * 109.97286 * 150.90457 * 19 18 17 21 21 C 1.55601 * 104.18989 * 45.50032 * 20 19 18 22 22 S 1.67002 * 126.30153 * 95.00196 * 18 17 15 23 23 O 1.42095 * 105.13173 * 298.89246 * 22 18 17 24 24 O 1.42099 * 105.13294 * 68.56689 * 22 18 17 25 25 C 1.38637 * 120.49705 * 0.25174 * 12 11 10 26 26 C 1.37619 * 120.24795 * 359.44872 * 25 12 11 27 27 H 0.96998 * 119.99777 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.12704 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.88212 * 179.97438 * 11 10 9 30 30 H 1.08999 * 109.46963 * 330.00412 * 13 12 11 31 31 H 1.08999 * 109.46898 * 209.99809 * 13 12 11 32 32 H 1.08992 * 109.47537 * 300.00669 * 17 15 14 33 33 H 1.09006 * 109.46661 * 60.00613 * 17 15 14 34 34 H 1.09005 * 109.35467 * 271.18170 * 19 18 17 35 35 H 1.08997 * 109.36088 * 30.81724 * 19 18 17 36 36 H 1.09007 * 110.64526 * 286.77118 * 20 19 18 37 37 H 1.08995 * 110.38690 * 164.10823 * 20 19 18 38 38 H 1.09009 * 111.16410 * 204.06362 * 21 20 19 39 39 H 1.09006 * 111.16593 * 79.80098 * 21 20 19 40 40 H 1.08004 * 119.87186 * 179.70394 * 25 12 11 41 41 H 1.08002 * 120.12601 * 180.27525 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3763 10 6 1.8257 -3.6499 0.0824 11 6 1.1798 -4.8065 -0.2900 12 6 0.0665 -4.7502 -1.1144 13 6 -0.6319 -6.0238 -1.5158 14 8 -1.6657 -6.3354 -0.5449 15 6 -2.3869 -7.4473 -0.7584 16 8 -2.1614 -8.1375 -1.7242 17 6 -3.4769 -7.8353 0.2072 18 7 -4.1098 -9.0771 -0.2440 19 6 -5.2061 -9.1918 -1.2176 20 6 -5.1143 -10.5426 -1.9581 21 6 -4.8506 -11.5797 -0.8285 22 16 -3.7238 -10.6225 0.2577 23 8 -2.3661 -10.8066 -0.1190 24 8 -4.1394 -10.6865 1.6150 25 6 -0.4056 -3.5315 -1.5770 26 6 0.2210 -2.3618 -1.2123 27 1 -0.4850 0.8400 0.0004 28 1 2.6931 -3.6961 0.7244 29 1 1.5418 -5.7618 0.0605 30 1 0.0908 -6.8389 -1.5512 31 1 -1.0839 -5.8958 -2.4994 32 1 -3.0482 -7.9856 1.1979 33 1 -4.2230 -7.0418 0.2507 34 1 -6.1609 -9.1270 -0.6957 35 1 -5.1346 -8.3785 -1.9398 36 1 -4.2884 -10.5355 -2.6694 37 1 -6.0537 -10.7620 -2.4654 38 1 -4.3583 -12.4704 -1.2190 39 1 -5.7731 -11.8383 -0.3084 40 1 -1.2708 -3.4998 -2.2226 41 1 -0.1511 -1.4132 -1.5701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776109870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:25 Heat of formation + Delta-G solvation = -147.786452 kcal Electronic energy + Delta-G solvation = -26365.355126 eV Core-core repulsion = 22336.663864 eV Total energy + Delta-G solvation = -4028.691262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42914 -39.52030 -38.32481 -38.12298 -37.29662 -36.95343 -35.68448 -34.21339 -32.60602 -31.24193 -29.69637 -28.53254 -26.77908 -25.48110 -23.11799 -22.95747 -22.34967 -21.79119 -19.96205 -19.27864 -18.85980 -18.39958 -18.06866 -17.45858 -17.34762 -17.01395 -16.74784 -15.93253 -15.86328 -15.61229 -15.48696 -15.37961 -14.58898 -14.44157 -14.28989 -14.05941 -13.88854 -13.74379 -13.67462 -13.51727 -13.23701 -13.07368 -12.87232 -12.73725 -12.70380 -12.58918 -12.43094 -12.10748 -12.07623 -11.74484 -11.63385 -11.47580 -11.46393 -11.28843 -11.05766 -10.19185 -9.44454 -9.33691 -8.69180 -6.40211 -0.82255 0.72170 1.09891 1.20880 1.31871 1.39029 1.48506 1.52374 2.00556 2.19715 2.60273 2.71641 2.96725 3.35095 3.59977 3.64626 3.84940 3.88309 4.05701 4.09190 4.10543 4.28387 4.41507 4.47221 4.51400 4.52631 4.53776 4.67704 4.84918 4.97036 4.99392 5.07521 5.11604 5.29593 5.35561 5.38812 5.54292 5.64310 5.87941 6.04754 6.13636 6.31275 6.63507 6.78418 6.87920 6.96296 8.27628 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.030732 B = 0.002036 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.887499 B =13746.431958 C =13887.954770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.493 4.493 8 H 0.079 0.921 9 C 0.087 3.913 10 C -0.246 4.246 11 C -0.068 4.068 12 C -0.230 4.230 13 C 0.142 3.858 14 O -0.363 6.363 15 C 0.424 3.576 16 O -0.525 6.525 17 C 0.167 3.833 18 N -0.981 5.981 19 C 0.068 3.932 20 C -0.124 4.124 21 C -0.551 4.551 22 S 2.543 3.457 23 O -1.004 7.004 24 O -0.992 6.992 25 C -0.078 4.078 26 C -0.193 4.193 27 H 0.291 0.709 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.127 0.873 33 H 0.159 0.841 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.177 0.823 40 H 0.110 0.890 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.218 -17.473 -3.501 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.521 4.521 8 H 0.097 0.903 9 C 0.085 3.915 10 C -0.265 4.265 11 C -0.086 4.086 12 C -0.232 4.232 13 C 0.069 3.931 14 O -0.280 6.280 15 C 0.266 3.734 16 O -0.414 6.414 17 C 0.040 3.960 18 N -0.822 5.822 19 C -0.056 4.056 20 C -0.164 4.164 21 C -0.687 4.687 22 S 2.645 3.355 23 O -0.994 6.994 24 O -0.982 6.982 25 C -0.096 4.096 26 C -0.212 4.212 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.177 0.823 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.195 0.805 40 H 0.128 0.872 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.582 -17.674 -3.009 23.753 hybrid contribution 0.473 0.837 -0.502 1.085 sum -15.110 -16.836 -3.511 22.893 Atomic orbital electron populations 1.69871 1.09063 1.30911 1.34328 1.26828 0.95542 1.04684 0.91073 0.85146 0.79038 0.75596 0.79600 1.18580 1.19069 1.18220 1.19923 0.98506 0.92419 1.41280 0.90322 1.18044 0.91659 0.93098 0.88726 1.21163 1.04758 0.92895 1.07703 1.20703 0.95016 0.97159 0.95732 1.18995 1.00934 0.92904 1.10317 1.21515 0.87126 0.94519 0.89897 1.86676 1.46117 1.42342 1.52839 1.25382 0.82904 0.78251 0.86896 1.90609 1.67619 1.52093 1.31082 1.20654 0.92743 0.88296 0.94325 1.56958 1.47368 1.20397 1.57436 1.22538 0.90142 1.00161 0.92769 1.22842 1.07856 0.89333 0.96328 1.30629 1.16112 1.10282 1.11628 1.07092 0.76075 0.76431 0.75935 1.93595 1.36318 1.85222 1.84218 1.93576 1.83661 1.85879 1.35090 1.20767 0.98006 0.92129 0.98695 1.21280 1.00497 0.97005 1.02453 0.89803 0.88077 0.86946 0.91782 0.91077 0.85551 0.82339 0.86847 0.88925 0.89841 0.83101 0.82024 0.80501 0.87238 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.98 10.95 21.83 0.24 -41.74 16 2 C 0.03 1.73 5.14 85.26 0.44 2.17 16 3 Si 0.99 37.43 29.60 68.60 2.03 39.46 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.49 -26.42 9.05 23.46 0.21 -26.21 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.09 4.74 5.57 -21.30 -0.12 4.63 16 10 C -0.25 -12.31 9.80 22.73 0.22 -12.08 16 11 C -0.07 -3.09 9.67 22.22 0.21 -2.88 16 12 C -0.23 -10.18 5.54 -19.67 -0.11 -10.29 16 13 C 0.14 5.39 5.58 71.24 0.40 5.78 16 14 O -0.36 -13.05 10.20 -51.46 -0.53 -13.58 16 15 C 0.42 13.11 8.03 71.24 0.57 13.68 16 16 O -0.53 -18.62 16.18 21.96 0.36 -18.26 16 17 C 0.17 3.50 6.94 85.63 0.59 4.09 16 18 N -0.98 -17.91 2.80 -516.09 -1.45 -19.36 16 19 C 0.07 0.64 6.83 86.72 0.59 1.23 16 20 C -0.12 -0.73 6.81 31.94 0.22 -0.51 16 21 C -0.55 -3.42 7.51 72.88 0.55 -2.88 16 22 S 2.54 50.61 6.17 -56.49 -0.35 50.26 16 23 O -1.00 -31.05 18.13 -127.77 -2.32 -33.37 16 24 O -0.99 -25.31 18.13 -127.77 -2.32 -27.63 16 25 C -0.08 -3.62 9.67 22.22 0.21 -3.40 16 26 C -0.19 -10.16 8.70 22.73 0.20 -9.96 16 27 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 28 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 29 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 30 H 0.06 2.38 8.07 -2.39 -0.02 2.36 16 31 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 32 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.16 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.81 8.14 -2.38 -0.02 0.80 16 37 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.16 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.18 0.00 8.14 -2.38 -0.02 -0.02 16 40 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 Total: -1.00 -80.41 366.15 0.91 -79.50 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 1.05 Total: 21.34 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 4.19 Total: -36.63 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -1.21 Total: -61.10 kcal Atomic # 8 Polarization: -88.03 SS G_CDS: -4.80 Total: -92.84 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Atomic # 16 Polarization: 50.61 SS G_CDS: -0.35 Total: 50.26 kcal Total: -80.41 0.91 -79.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776109870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.288 kcal (2) G-P(sol) polarization free energy of solvation -80.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds