Wall clock time and date at job start Tue Mar 31 2020 22:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99907 * 2 1 4 4 H 1.48497 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47400 * 300.00498 * 3 2 1 6 6 H 1.48508 * 109.46830 * 60.00318 * 3 2 1 7 7 C 1.39939 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00104 * 190.65574 * 7 2 1 9 9 C 1.41433 * 119.99805 * 10.65618 * 7 2 1 10 10 C 1.40784 * 120.17909 * 208.98195 * 9 7 2 11 11 C 1.37710 * 120.04498 * 180.27595 * 10 9 7 12 12 C 1.38370 * 120.40989 * 0.02562 * 11 10 9 13 13 C 1.39880 * 120.36078 * 359.97438 * 12 11 10 14 14 C 1.47881 * 120.02958 * 179.97438 * 13 12 11 15 15 O 1.21544 * 120.00366 * 180.02562 * 14 13 12 16 16 N 1.34779 * 119.99903 * 0.02562 * 14 13 12 17 17 S 1.65598 * 120.00268 * 184.97260 * 16 14 13 18 18 O 1.42098 * 104.27967 * 179.02037 * 17 16 14 19 19 O 1.42103 * 104.27609 * 306.87641 * 17 16 14 20 20 C 1.81403 * 104.44995 * 62.94652 * 17 16 14 21 21 H 1.08997 * 109.52311 * 295.52287 * 20 17 16 22 22 C 1.53176 * 109.51951 * 55.71290 * 20 17 16 23 23 C 1.53183 * 109.03567 * 176.88793 * 22 20 17 24 24 C 1.53091 * 109.15802 * 303.01860 * 23 22 20 25 25 O 1.42910 * 109.41854 * 57.61273 * 24 23 22 26 26 C 1.42905 * 114.09099 * 298.83595 * 25 24 23 27 27 C 1.39037 * 119.94875 * 0.02562 * 13 12 11 28 28 H 0.96995 * 120.00151 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.97578 * 0.25321 * 10 9 7 30 30 H 1.08005 * 119.79596 * 179.97438 * 11 10 9 31 31 H 1.08006 * 119.82154 * 180.02562 * 12 11 10 32 32 H 0.96998 * 119.99813 * 4.97035 * 16 14 13 33 33 H 1.09000 * 109.54178 * 296.75111 * 22 20 17 34 34 H 1.08993 * 109.54505 * 57.01830 * 22 20 17 35 35 H 1.08990 * 109.52293 * 183.11404 * 23 22 20 36 36 H 1.09003 * 109.52143 * 62.92196 * 23 22 20 37 37 H 1.08993 * 109.48425 * 297.62514 * 24 23 22 38 38 H 1.09005 * 109.47948 * 177.58951 * 24 23 22 39 39 H 1.08999 * 109.48456 * 301.17744 * 26 25 24 40 40 H 1.08997 * 109.48489 * 181.14787 * 26 25 24 41 41 H 1.07992 * 120.20454 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3966 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0740 -1.2200 0.1724 9 6 1.3192 -2.4261 -0.2276 10 6 1.7941 -3.6254 0.3365 11 6 1.1244 -4.8069 0.1090 12 6 -0.0166 -4.8259 -0.6736 13 6 -0.5035 -3.6443 -1.2424 14 6 -1.7233 -3.6731 -2.0780 15 8 -2.1456 -2.6462 -2.5724 16 7 -2.3666 -4.8380 -2.2913 17 16 -3.6593 -4.8928 -3.3250 18 8 -4.0567 -6.2571 -3.3171 19 8 -4.5293 -3.8736 -2.8524 20 6 -2.9671 -4.4408 -4.9397 21 1 -2.6050 -3.4133 -4.9060 22 6 -1.8084 -5.3824 -5.2816 23 6 -1.2831 -5.0412 -6.6795 24 6 -2.4316 -5.1436 -7.6866 25 8 -3.4884 -4.2657 -7.2930 26 6 -4.0506 -4.5664 -6.0140 27 6 0.1609 -2.4429 -1.0224 28 1 -0.4850 0.8400 0.0004 29 1 2.6845 -3.6187 0.9478 30 1 1.4925 -5.7247 0.5433 31 1 -0.5346 -5.7579 -0.8455 32 1 -2.0725 -5.6443 -1.8394 33 1 -1.0091 -5.2571 -4.5512 34 1 -2.1600 -6.4139 -5.2660 35 1 -0.4948 -5.7421 -6.9536 36 1 -0.8862 -4.0260 -6.6817 37 1 -2.8014 -6.1685 -7.7133 38 1 -2.0735 -4.8603 -8.6764 39 1 -4.4415 -5.5838 -6.0187 40 1 -4.8588 -3.8674 -5.7987 41 1 -0.2111 -1.5283 -1.4599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780604872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:33 Heat of formation + Delta-G solvation = -141.846560 kcal Electronic energy + Delta-G solvation = -27711.613416 eV Core-core repulsion = 23683.179727 eV Total energy + Delta-G solvation = -4028.433689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.78491 -39.52110 -37.40967 -37.06695 -36.09096 -34.39090 -34.06645 -33.64395 -31.66711 -30.28003 -29.62862 -25.59770 -25.45823 -24.33213 -23.57014 -21.20423 -20.94738 -20.37041 -19.41253 -18.31222 -17.82663 -17.23993 -16.39845 -16.36362 -16.14198 -15.51588 -15.24528 -15.11656 -14.83457 -14.62172 -14.35553 -14.16757 -13.77851 -13.46115 -13.07309 -13.03875 -12.73635 -12.51907 -12.37195 -12.21855 -12.06134 -11.81966 -11.67038 -11.55378 -11.29490 -11.21270 -10.96234 -10.89251 -10.71807 -10.61512 -10.34249 -10.32604 -9.88941 -9.85861 -9.50884 -9.38618 -7.87765 -7.64607 -6.86553 -4.56541 -0.00566 1.76305 2.39046 2.66436 3.01999 3.03007 3.07425 3.29757 3.49593 3.60504 3.84785 3.92527 4.16554 4.37102 4.49440 4.55006 4.63910 4.78882 4.97024 5.04831 5.15753 5.22992 5.32166 5.34754 5.40722 5.42996 5.62938 5.66579 5.87759 5.90401 6.08158 6.49363 6.69728 6.75499 6.83410 6.96159 7.08649 7.17990 7.50598 7.58571 7.79657 7.97484 8.10573 8.34574 8.66225 8.69374 10.07886 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.003450 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.529163 B = 8114.279226 C = 8612.633732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.458 4.458 8 H 0.083 0.917 9 C 0.097 3.903 10 C -0.200 4.200 11 C -0.098 4.098 12 C -0.211 4.211 13 C -0.138 4.138 14 C 0.583 3.417 15 O -0.500 6.500 16 N -1.051 6.051 17 S 2.601 3.399 18 O -0.951 6.951 19 O -0.926 6.926 20 C -0.626 4.626 21 H 0.160 0.840 22 C -0.109 4.109 23 C -0.148 4.148 24 C 0.054 3.946 25 O -0.365 6.365 26 C 0.083 3.917 27 C -0.079 4.079 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.432 0.568 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 -10.085 -10.696 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.094 3.906 10 C -0.220 4.220 11 C -0.116 4.116 12 C -0.231 4.231 13 C -0.143 4.143 14 C 0.375 3.625 15 O -0.374 6.374 16 N -0.818 5.818 17 S 2.695 3.305 18 O -0.941 6.941 19 O -0.916 6.916 20 C -0.736 4.736 21 H 0.178 0.822 22 C -0.147 4.147 23 C -0.187 4.187 24 C -0.022 4.022 25 O -0.283 6.283 26 C 0.004 3.996 27 C -0.099 4.099 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.270 0.730 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.102 -9.201 -10.929 14.864 hybrid contribution 1.125 0.283 0.278 1.193 sum -2.976 -8.917 -10.652 14.207 Atomic orbital electron populations 1.69733 1.07455 1.29828 1.34526 1.25971 0.94904 1.01602 0.92339 0.86155 0.80632 0.80605 0.78760 1.18382 1.19583 1.19815 1.19637 0.96104 0.90183 1.42837 0.89925 1.17623 0.91369 0.92674 0.88894 1.21225 1.02707 0.93276 1.04777 1.20467 0.95627 0.96907 0.98627 1.20378 1.00516 0.95154 1.07075 1.19322 0.95498 0.96179 1.03300 1.18888 0.83597 0.80758 0.79219 1.90869 1.65869 1.31290 1.49361 1.54913 1.50158 1.19180 1.57587 1.05527 0.73940 0.74483 0.76531 1.93608 1.79929 1.33967 1.86602 1.93662 1.61529 1.59529 1.76872 1.31104 1.09307 1.12749 1.20423 0.82247 1.21427 0.95892 0.97715 0.99668 1.22095 0.98651 1.03747 0.94164 1.22708 0.87332 0.93953 0.98218 1.87985 1.51349 1.55748 1.33198 1.22259 0.92772 1.02181 0.82346 1.21769 0.95886 0.95628 0.96621 0.90317 0.88266 0.88480 0.88831 0.72982 0.89473 0.89869 0.89872 0.90228 0.92702 0.88297 0.91440 0.87290 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.18 10.87 55.55 0.60 -19.57 16 2 C 0.07 1.70 5.25 -17.34 -0.09 1.61 16 3 Si 0.91 18.09 29.57 -169.99 -5.03 13.06 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.39 9.06 -37.73 -0.34 -11.73 16 8 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 9 C 0.10 2.40 5.54 -106.87 -0.59 1.81 16 10 C -0.20 -4.39 9.78 -38.81 -0.38 -4.77 16 11 C -0.10 -1.90 10.01 -39.73 -0.40 -2.30 16 12 C -0.21 -4.01 9.55 -38.92 -0.37 -4.38 16 13 C -0.14 -2.96 5.87 -105.04 -0.62 -3.58 16 14 C 0.58 11.48 7.49 -12.31 -0.09 11.39 16 15 O -0.50 -11.17 14.53 -11.88 -0.17 -11.35 16 16 N -1.05 -16.12 5.12 30.54 0.16 -15.96 16 17 S 2.60 38.35 4.56 -107.50 -0.49 37.86 16 18 O -0.95 -14.14 18.06 -57.54 -1.04 -15.18 16 19 O -0.93 -17.53 17.05 -64.81 -1.11 -18.64 16 20 C -0.63 -7.79 2.71 -26.59 -0.07 -7.86 16 21 H 0.16 2.20 7.33 -51.93 -0.38 1.82 16 22 C -0.11 -1.13 5.16 -26.55 -0.14 -1.27 16 23 C -0.15 -1.36 6.14 -26.59 -0.16 -1.53 16 24 C 0.05 0.48 6.84 37.20 0.25 0.74 16 25 O -0.36 -4.28 10.77 -35.23 -0.38 -4.66 16 26 C 0.08 0.93 6.13 37.21 0.23 1.16 16 27 C -0.08 -1.95 8.20 -38.44 -0.32 -2.26 16 28 H 0.29 6.72 8.30 -40.82 -0.34 6.39 16 29 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 30 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 31 H 0.09 1.40 6.39 -52.48 -0.34 1.07 16 32 H 0.43 5.38 6.82 -34.47 -0.24 5.15 16 33 H 0.09 0.91 7.88 -51.93 -0.41 0.50 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.14 3.70 5.82 -52.49 -0.31 3.39 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -31.70 353.10 -10.24 -41.94 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.02 Total: 10.15 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -3.09 Total: -22.98 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.76 Total: -35.53 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -2.70 Total: -49.83 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: 38.35 SS G_CDS: -0.49 Total: 37.86 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.70 -10.24 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780604872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.905 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds