Wall clock time and date at job start Tue Mar 31 2020 22:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86799 * 120.00096 * 2 1 4 4 H 1.48499 * 109.47340 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47164 * 119.99838 * 3 2 1 6 6 H 1.48504 * 109.47024 * 239.99571 * 3 2 1 7 7 C 1.38640 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00054 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00146 * 0.02562 * 7 2 1 10 10 C 1.35772 * 117.00110 * 174.98335 * 9 7 2 11 11 C 1.38738 * 120.08866 * 5.15920 * 10 9 7 12 12 C 1.38345 * 119.97918 * 179.77034 * 11 10 9 13 13 F 1.35096 * 119.92632 * 180.23051 * 12 11 10 14 14 C 1.38556 * 120.15027 * 0.53372 * 12 11 10 15 15 C 1.38186 * 120.17498 * 359.70051 * 14 12 11 16 16 C 1.38710 * 120.02534 * 0.04212 * 15 14 12 17 17 N 1.40084 * 120.07968 * 179.97438 * 16 15 14 18 18 C 1.34784 * 119.99627 * 335.20106 * 17 16 15 19 19 O 1.21293 * 120.00038 * 354.43634 * 18 17 16 20 20 C 1.50704 * 119.99632 * 174.43970 * 18 17 16 21 21 H 1.09001 * 110.33022 * 304.29776 * 20 18 17 22 22 C 1.54482 * 110.37295 * 66.54767 * 20 18 17 23 23 C 1.54675 * 103.97909 * 142.73795 * 22 20 18 24 24 C 1.54476 * 104.08152 * 0.13392 * 23 22 20 25 25 H 1.09004 * 110.37183 * 94.76226 * 24 23 22 26 26 C 1.50697 * 110.46990 * 217.05154 * 24 23 22 27 27 O 1.20829 * 119.99719 * 111.89233 * 26 24 23 28 28 O 1.34225 * 120.00240 * 291.89132 * 26 24 23 29 29 O 1.44423 * 110.37258 * 182.04863 * 20 18 17 30 30 H 0.96995 * 120.00062 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.01198 * 0.03122 * 11 10 9 32 32 H 1.07997 * 119.90942 * 179.72167 * 14 12 11 33 33 H 1.07997 * 119.98703 * 180.02562 * 15 14 12 34 34 H 0.96993 * 119.99863 * 155.19650 * 17 16 15 35 35 H 1.09007 * 110.51214 * 261.45707 * 22 20 18 36 36 H 1.09001 * 110.50972 * 24.16244 * 22 20 18 37 37 H 1.09003 * 110.58156 * 241.45113 * 23 22 20 38 38 H 1.08998 * 110.54447 * 118.80597 * 23 22 20 39 39 H 0.96701 * 117.00611 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 1.2849 2.7465 -0.0006 5 1 3.1035 1.6964 1.2126 6 1 3.1036 1.6963 -1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0703 -3.5046 -0.1047 11 6 3.4561 -3.4393 -0.0983 12 6 4.2033 -4.5991 -0.2009 13 9 5.5526 -4.5348 -0.1899 14 6 3.5708 -5.8260 -0.3213 15 6 2.1908 -5.8979 -0.3332 16 6 1.4346 -4.7401 -0.2254 17 7 0.0356 -4.8116 -0.2380 18 6 -0.5806 -5.8528 -0.8320 19 8 0.0699 -6.6746 -1.4424 20 6 -2.0779 -5.9958 -0.7377 21 1 -2.3926 -6.0043 0.3059 22 6 -2.7768 -4.8487 -1.5008 23 6 -4.0107 -5.5247 -2.1432 24 6 -3.9115 -6.9977 -1.6887 25 1 -4.5091 -7.1591 -0.7915 26 6 -4.3624 -7.9209 -2.7912 27 8 -3.5630 -8.6414 -3.3405 28 8 -5.6520 -7.9428 -3.1629 29 8 -2.5107 -7.2023 -1.4032 30 1 -0.4850 -0.8400 -0.0004 31 1 3.9515 -2.4837 -0.0090 32 1 4.1579 -6.7285 -0.4056 33 1 1.7010 -6.8558 -0.4267 34 1 -0.4895 -4.1119 0.1809 35 1 -3.0853 -4.0632 -0.8107 36 1 -2.1187 -4.4454 -2.2704 37 1 -3.9626 -5.4563 -3.2301 38 1 -4.9307 -5.0720 -1.7734 39 1 -5.8937 -8.5516 -3.8742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785402737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:37 Heat of formation + Delta-G solvation = -208.187856 kcal Electronic energy + Delta-G solvation = -29036.902947 eV Core-core repulsion = 24439.379308 eV Total energy + Delta-G solvation = -4597.523639 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.33854 -41.09167 -40.32334 -39.31658 -38.27827 -36.47123 -36.36015 -34.35887 -32.56063 -32.45398 -30.96165 -29.50094 -28.34102 -25.51712 -25.18591 -22.82107 -22.30901 -21.74155 -21.55573 -20.24479 -18.81729 -18.55041 -18.07168 -17.57138 -17.13588 -16.86512 -16.54954 -15.81046 -15.51477 -15.35482 -15.10945 -15.00747 -14.78956 -14.49998 -14.14314 -13.98255 -13.94911 -13.81718 -13.63032 -13.37337 -12.54708 -12.46026 -12.36828 -12.13388 -12.06277 -11.80001 -11.49879 -11.26855 -10.98262 -10.89341 -10.80967 -10.79594 -10.39831 -10.35276 -9.95498 -9.84168 -9.37376 -8.95518 -8.00937 -7.23689 -6.97760 -4.27076 1.63705 1.84350 1.99280 2.17622 2.69465 3.02701 3.15556 3.19045 3.35576 3.78286 3.92724 4.10138 4.23088 4.39633 4.45267 4.60521 4.63339 4.68911 4.85008 4.93643 4.99369 5.01510 5.14976 5.41069 5.46928 5.52614 5.64273 5.70348 5.87843 6.03053 6.11606 6.19342 6.40581 6.63136 6.77218 6.83298 6.89870 7.30895 7.49172 7.56228 7.66521 8.15574 8.28716 8.67358 9.29175 10.45516 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.003244 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.974116 B = 8628.640873 C =10827.061497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.016 3.984 3 Si 1.094 2.906 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.471 4.471 8 H 0.087 0.913 9 O -0.195 6.195 10 C 0.160 3.840 11 C -0.253 4.253 12 C 0.129 3.871 13 F -0.150 7.150 14 C -0.223 4.223 15 C -0.059 4.059 16 C 0.060 3.940 17 N -0.645 5.645 18 C 0.513 3.487 19 O -0.505 6.505 20 C 0.060 3.940 21 H 0.106 0.894 22 C -0.148 4.148 23 C -0.136 4.136 24 C 0.082 3.918 25 H 0.114 0.886 26 C 0.482 3.518 27 O -0.486 6.486 28 O -0.513 6.513 29 O -0.316 6.316 30 H 0.280 0.720 31 H 0.145 0.855 32 H 0.125 0.875 33 H 0.148 0.852 34 H 0.414 0.586 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.490 -8.765 -0.516 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.190 4.190 3 Si 0.917 3.083 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.546 4.546 8 H 0.104 0.896 9 O -0.099 6.099 10 C 0.105 3.895 11 C -0.274 4.274 12 C 0.109 3.891 13 F -0.128 7.128 14 C -0.243 4.243 15 C -0.080 4.080 16 C -0.034 4.034 17 N -0.290 5.290 18 C 0.298 3.702 19 O -0.380 6.380 20 C -0.001 4.001 21 H 0.124 0.876 22 C -0.186 4.186 23 C -0.174 4.174 24 C 0.023 3.977 25 H 0.131 0.869 26 C 0.322 3.678 27 O -0.371 6.371 28 O -0.327 6.327 29 O -0.234 6.234 30 H 0.090 0.910 31 H 0.163 0.837 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.250 0.750 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -10.033 -7.759 -0.827 12.711 hybrid contribution 0.136 -1.590 -0.252 1.616 sum -9.897 -9.350 -1.079 13.658 Atomic orbital electron populations 1.70633 1.06499 1.31380 1.42077 1.26558 0.96768 1.01052 0.94616 0.83122 0.74600 0.73193 0.77364 1.19664 1.20549 1.20580 1.22237 0.93345 0.81683 1.57325 0.89571 1.83569 1.35163 1.12060 1.79077 1.18511 0.89491 0.86173 0.95307 1.20867 0.93335 0.98552 1.14601 1.17474 0.76057 0.94300 1.01228 1.91419 1.30009 1.97363 1.94036 1.20532 0.94595 0.96014 1.13205 1.20796 0.92381 0.97422 0.97379 1.16873 0.81795 0.91499 1.13203 1.42983 1.05367 1.24852 1.55787 1.20028 0.88789 0.82089 0.79254 1.90703 1.65881 1.41675 1.39724 1.22912 0.92800 0.85805 0.98571 0.87613 1.23037 0.96715 0.97652 1.01158 1.22900 0.99880 0.91840 1.02805 1.22379 0.86048 0.93641 0.95666 0.86854 1.22826 0.80009 0.81772 0.83169 1.90802 1.54141 1.39424 1.52768 1.84457 1.28311 1.63894 1.56004 1.89381 1.20674 1.35041 1.78279 0.91032 0.83747 0.85693 0.83414 0.74967 0.88070 0.89134 0.89727 0.88215 0.72534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.43 13.70 55.48 0.76 -22.67 16 2 C 0.02 0.41 5.49 -17.51 -0.10 0.31 16 3 Si 1.09 22.08 29.92 -169.99 -5.09 17.00 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.47 -12.11 9.49 30.88 0.29 -11.82 16 8 H 0.09 2.13 5.20 -52.49 -0.27 1.86 16 9 O -0.19 -4.80 8.57 0.05 0.00 -4.80 16 10 C 0.16 3.58 6.66 -38.94 -0.26 3.32 16 11 C -0.25 -5.46 9.14 -39.36 -0.36 -5.82 16 12 C 0.13 2.57 7.29 -39.42 -0.29 2.28 16 13 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 14 C -0.22 -4.15 10.02 -39.48 -0.40 -4.54 16 15 C -0.06 -1.14 8.72 -39.43 -0.34 -1.49 16 16 C 0.06 1.21 6.45 -83.45 -0.54 0.67 16 17 N -0.64 -10.93 5.28 -9.71 -0.05 -10.99 16 18 C 0.51 8.46 6.88 -10.98 -0.08 8.38 16 19 O -0.51 -10.26 13.72 -13.66 -0.19 -10.45 16 20 C 0.06 0.73 3.71 -27.10 -0.10 0.63 16 21 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 22 C -0.15 -1.48 6.63 -25.07 -0.17 -1.65 16 23 C -0.14 -1.13 6.63 -25.08 -0.17 -1.30 16 24 C 0.08 0.81 3.81 -27.11 -0.10 0.70 16 25 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 26 C 0.48 5.26 7.57 36.00 0.27 5.53 16 27 O -0.49 -7.54 17.31 -25.28 -0.44 -7.98 16 28 O -0.51 -3.59 13.42 -39.25 -0.53 -4.11 16 29 O -0.32 -4.50 10.17 -64.23 -0.65 -5.15 16 30 H 0.28 7.43 7.97 -40.82 -0.33 7.10 16 31 H 0.15 3.14 5.63 -52.48 -0.30 2.85 16 32 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.15 2.80 5.79 -52.49 -0.30 2.49 16 34 H 0.41 6.34 8.35 -40.82 -0.34 6.00 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.09 7.86 -51.93 -0.41 0.68 16 37 H 0.08 0.74 7.87 -51.93 -0.41 0.34 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.42 1.21 9.10 45.56 0.41 1.63 16 LS Contribution 347.59 15.07 5.24 5.24 Total: -1.00 -34.58 347.59 -6.08 -40.66 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -2.85 Total: 10.84 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.33 Total: -4.77 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.71 Total: -33.66 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.80 Total: -32.50 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.09 Total: 17.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.58 -6.08 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785402737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.526 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds