Wall clock time and date at job start Tue Mar 31 2020 22:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 110.64089 * 2 1 4 4 O 1.20824 * 119.99718 * 239.29567 * 3 2 1 5 5 O 1.34232 * 120.00097 * 59.29792 * 3 2 1 6 6 C 1.55163 * 110.71910 * 123.14065 * 2 1 3 7 7 C 1.54913 * 101.58044 * 83.03796 * 6 2 1 8 8 N 1.47426 * 104.83151 * 37.01084 * 7 6 2 9 9 S 1.65601 * 125.64774 * 155.83302 * 8 7 6 10 10 O 1.42094 * 106.40393 * 203.56520 * 9 8 7 11 11 O 1.42106 * 106.40106 * 336.48493 * 9 8 7 12 12 C 1.76201 * 107.21793 * 90.02239 * 9 8 7 13 13 C 1.38661 * 119.87184 * 89.99679 * 12 9 8 14 14 C 1.38615 * 120.50058 * 179.97438 * 13 12 9 15 15 C 1.37636 * 120.24479 * 0.02906 * 14 13 12 16 16 C 1.40696 * 119.75176 * 359.97438 * 15 14 13 17 17 C 1.41391 * 120.24761 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99769 * 155.19273 * 17 16 15 19 19 C 1.39938 * 120.00080 * 335.19525 * 17 16 15 20 20 N 1.30826 * 120.00108 * 342.31911 * 19 17 16 21 21 Si 1.86800 * 119.99994 * 162.32221 * 19 17 16 22 22 H 1.48501 * 109.47501 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47129 * 119.99963 * 21 19 17 24 24 H 1.48501 * 109.47295 * 239.99544 * 21 19 17 25 25 C 1.37599 * 119.87695 * 269.72849 * 12 9 8 26 26 C 1.47314 * 108.73607 * 335.71517 * 8 7 6 27 27 H 1.09008 * 109.46886 * 60.70558 * 1 2 3 28 28 H 1.09005 * 109.47010 * 180.69713 * 1 2 3 29 29 H 1.08995 * 109.47319 * 300.70445 * 1 2 3 30 30 H 0.96695 * 117.00122 * 179.97438 * 5 3 2 31 31 H 1.08999 * 111.00640 * 201.11244 * 6 2 1 32 32 H 1.09005 * 110.99952 * 324.92870 * 6 2 1 33 33 H 1.09004 * 110.36306 * 155.84908 * 7 6 2 34 34 H 1.09003 * 110.36575 * 278.17035 * 7 6 2 35 35 H 1.08001 * 119.74957 * 0.02562 * 13 12 9 36 36 H 1.07997 * 119.87334 * 180.02562 * 14 13 12 37 37 H 1.08011 * 120.12538 * 179.97438 * 15 14 13 38 38 H 0.96998 * 119.99784 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.12980 * 359.97438 * 25 12 9 40 40 H 1.09002 * 110.06319 * 241.87337 * 26 8 7 41 41 H 1.09004 * 109.85091 * 120.61079 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0612 1.4102 0.0000 4 8 2.7741 1.7872 -0.8997 5 8 1.7424 2.2476 0.9995 6 6 2.0789 -0.7934 1.2152 7 6 2.0169 -2.2494 0.6897 8 7 2.3779 -2.1516 -0.7363 9 16 3.0148 -3.3722 -1.6566 10 8 3.7039 -2.7474 -2.7307 11 8 3.6390 -4.2730 -0.7519 12 6 1.6623 -4.2448 -2.3736 13 6 1.1634 -3.8528 -3.6066 14 6 0.1002 -4.5303 -4.1829 15 6 -0.4725 -5.6011 -3.5351 16 6 0.0254 -6.0077 -2.2836 17 6 -0.5547 -7.1067 -1.6091 18 1 0.0261 -7.6681 -0.8923 19 6 -1.8815 -7.4669 -1.8705 20 7 -2.6876 -6.6168 -2.4528 21 14 -2.5015 -9.1616 -1.3878 22 1 -1.4016 -9.9277 -0.7485 23 1 -3.6284 -9.0224 -0.4306 24 1 -2.9678 -9.8819 -2.5998 25 6 1.1089 -5.3160 -1.7106 26 6 2.0760 -0.7892 -1.2085 27 1 -0.3633 0.5029 -0.8963 28 1 -0.3633 -1.0276 0.0125 29 1 -0.3634 0.5247 0.8835 30 1 2.1072 3.1420 0.9562 31 1 3.1050 -0.5027 1.4404 32 1 1.4381 -0.6646 2.0875 33 1 2.7343 -2.8751 1.2207 34 1 1.0089 -2.6496 0.7993 35 1 1.6070 -3.0139 -4.1221 36 1 -0.2801 -4.2166 -5.1438 37 1 -1.3011 -6.1273 -3.9858 38 1 -3.6071 -6.8667 -2.6342 39 1 1.5021 -5.6225 -0.7526 40 1 1.3251 -0.8249 -1.9978 41 1 2.9852 -0.3163 -1.5800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794907372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:01 Heat of formation + Delta-G solvation = -169.191188 kcal Electronic energy + Delta-G solvation = -27718.889622 eV Core-core repulsion = 23689.270181 eV Total energy + Delta-G solvation = -4029.619441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77644 -39.45798 -39.35517 -38.35036 -37.10969 -36.98228 -35.67085 -33.72122 -31.92398 -31.60468 -30.54166 -27.56271 -27.34284 -25.32834 -23.70567 -23.23332 -22.80445 -20.90851 -20.33054 -19.68534 -18.86735 -18.65581 -17.81990 -17.42208 -17.08601 -16.75525 -16.62557 -16.52918 -15.93381 -15.35321 -15.13057 -14.99481 -14.90058 -14.35287 -14.31619 -13.89901 -13.70760 -13.43852 -13.39096 -13.35396 -13.21656 -13.11922 -13.05239 -12.88945 -12.81576 -12.64701 -12.58515 -12.48939 -12.20883 -12.04830 -11.83809 -11.55728 -11.41160 -11.33893 -11.14638 -10.08453 -9.84296 -9.56935 -8.73231 -6.45062 -0.64675 0.38332 0.83177 1.13684 1.38994 1.45202 1.53736 1.84908 2.15725 2.18544 2.55839 2.72966 3.04488 3.27236 3.52025 3.53976 3.79407 4.16389 4.19245 4.28625 4.36415 4.42187 4.49226 4.65235 4.69502 4.81322 4.82810 4.88230 4.89148 4.96870 5.00092 5.02948 5.07935 5.18939 5.32074 5.35743 5.41884 5.55517 5.58580 5.87661 5.93317 6.08848 6.52146 6.79675 6.84050 6.97576 8.24879 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015573 B = 0.003424 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.494634 B = 8174.873053 C = 8711.432729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 C 0.505 3.495 4 O -0.546 6.546 5 O -0.497 6.497 6 C -0.100 4.100 7 C 0.103 3.897 8 N -1.010 6.010 9 S 2.729 3.271 10 O -0.986 6.986 11 O -0.983 6.983 12 C -0.637 4.637 13 C -0.152 4.152 14 C -0.121 4.121 15 C -0.141 4.141 16 C 0.066 3.934 17 C -0.495 4.495 18 H 0.080 0.920 19 C 0.040 3.960 20 N -0.819 5.819 21 Si 0.982 3.018 22 H -0.260 1.260 23 H -0.263 1.263 24 H -0.264 1.264 25 C -0.142 4.142 26 C 0.126 3.874 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.430 0.570 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.292 0.708 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 13.503 8.724 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.064 4.064 3 C 0.348 3.652 4 O -0.437 6.437 5 O -0.311 6.311 6 C -0.139 4.139 7 C -0.021 4.021 8 N -0.849 5.849 9 S 2.825 3.175 10 O -0.976 6.976 11 O -0.974 6.974 12 C -0.726 4.726 13 C -0.173 4.173 14 C -0.140 4.140 15 C -0.160 4.160 16 C 0.062 3.938 17 C -0.524 4.524 18 H 0.098 0.902 19 C -0.176 4.176 20 N -0.445 5.445 21 Si 0.802 3.198 22 H -0.183 1.183 23 H -0.187 1.187 24 H -0.189 1.189 25 C -0.163 4.163 26 C 0.001 3.999 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.292 0.708 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.098 0.902 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.894 13.021 8.284 15.548 hybrid contribution -0.779 -0.401 -0.535 1.026 sum 1.115 12.620 7.749 14.851 Atomic orbital electron populations 1.21875 0.88797 1.04350 1.04278 1.21426 0.99409 0.87832 0.97749 1.22933 0.76099 0.87887 0.78285 1.90746 1.37051 1.77833 1.38033 1.84466 1.70887 1.28771 1.46938 1.22913 1.03384 0.91253 0.96328 1.22409 1.02324 0.99057 0.78338 1.58453 1.81763 1.23137 1.21566 1.00453 0.73380 0.71707 0.71954 1.93486 1.71810 1.76591 1.55721 1.93491 1.74278 1.64394 1.65194 1.30250 1.22474 1.12251 1.07648 1.20415 0.99126 1.02418 0.95312 1.21116 0.96503 0.96596 0.99791 1.21637 1.01115 0.98415 0.94863 1.18026 0.91454 0.92384 0.91901 1.19877 0.97644 1.12354 1.22540 0.90223 1.26709 0.96196 1.01929 0.92761 1.69814 1.06838 1.35854 1.31987 0.85159 0.78707 0.76839 0.79081 1.18350 1.18720 1.18899 1.20856 1.00012 0.96165 0.99267 1.21848 1.01548 0.80432 0.96059 0.91676 0.90666 0.88544 0.70795 0.89511 0.85106 0.88991 0.89799 0.85652 0.85664 0.86840 0.89710 0.86895 0.90243 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.36 71.98 0.60 -1.61 16 2 C -0.06 -1.19 0.86 -51.74 -0.04 -1.24 16 3 C 0.51 9.72 6.99 71.24 0.50 10.21 16 4 O -0.55 -14.61 16.19 21.97 0.36 -14.26 16 5 O -0.50 -5.74 13.37 -51.44 -0.69 -6.43 16 6 C -0.10 -1.62 6.02 31.99 0.19 -1.42 16 7 C 0.10 2.36 6.79 86.86 0.59 2.95 16 8 N -1.01 -30.20 3.70 -505.70 -1.87 -32.08 16 9 S 2.73 104.90 5.93 -56.49 -0.34 104.57 16 10 O -0.99 -41.37 16.85 -128.00 -2.16 -43.53 16 11 O -0.98 -41.25 16.58 -128.00 -2.12 -43.37 16 12 C -0.64 -28.01 5.97 22.22 0.13 -27.88 16 13 C -0.15 -6.59 9.53 22.46 0.21 -6.37 16 14 C -0.12 -5.41 10.02 22.22 0.22 -5.19 16 15 C -0.14 -7.08 8.70 22.73 0.20 -6.88 16 16 C 0.07 3.44 5.57 -21.29 -0.12 3.32 16 17 C -0.50 -25.65 9.05 23.46 0.21 -25.44 16 18 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 19 C 0.04 1.91 5.14 85.25 0.44 2.34 16 20 N -0.82 -40.08 10.97 21.82 0.24 -39.84 16 21 Si 0.98 36.23 29.59 68.60 2.03 38.26 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 23 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 24 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 25 C -0.14 -6.87 9.26 22.73 0.21 -6.66 16 26 C 0.13 3.39 6.01 86.67 0.52 3.91 16 27 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.07 1.37 7.48 -2.38 -0.02 1.35 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.43 1.45 9.10 -74.06 -0.67 0.78 16 31 H 0.09 1.33 8.04 -2.39 -0.02 1.31 16 32 H 0.13 1.30 8.04 -2.38 -0.02 1.28 16 33 H 0.09 2.08 7.78 -2.38 -0.02 2.07 16 34 H 0.08 1.83 7.74 -2.39 -0.02 1.81 16 35 H 0.13 4.87 7.60 -2.91 -0.02 4.85 16 36 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 37 H 0.11 5.86 6.18 -2.91 -0.02 5.84 16 38 H 0.29 12.78 8.30 -92.71 -0.77 12.01 16 39 H 0.11 5.26 7.60 -2.91 -0.02 5.24 16 40 H 0.08 2.11 7.84 -2.39 -0.02 2.09 16 41 H 0.08 2.28 6.84 -2.38 -0.02 2.26 16 Total: -1.00 -70.55 357.57 -0.28 -70.83 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.40 Total: 25.78 kcal Atomic # 6 Polarization: -63.81 SS G_CDS: 3.87 Total: -59.94 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -1.63 Total: -71.91 kcal Atomic # 8 Polarization: -102.97 SS G_CDS: -4.61 Total: -107.58 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Atomic # 16 Polarization: 104.90 SS G_CDS: -0.34 Total: 104.57 kcal Total: -70.55 -0.28 -70.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794907372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.357 kcal (2) G-P(sol) polarization free energy of solvation -70.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds