Wall clock time and date at job start Tue Mar 31 2020 22:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46997 * 299.99848 * 3 2 1 6 6 H 1.48501 * 109.47532 * 59.99850 * 3 2 1 7 7 C 1.39943 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00048 * 197.86519 * 7 2 1 9 9 C 1.41392 * 119.99806 * 17.87299 * 7 2 1 10 10 C 1.40728 * 120.24699 * 24.37657 * 9 7 2 11 11 C 1.37599 * 119.74830 * 179.97438 * 10 9 7 12 12 C 1.38659 * 120.24614 * 359.97438 * 11 10 9 13 13 C 1.38611 * 120.49960 * 0.27581 * 12 11 10 14 14 S 1.76201 * 119.87355 * 179.70252 * 13 12 11 15 15 O 1.42100 * 106.40166 * 203.54182 * 14 13 12 16 16 O 1.42107 * 106.40274 * 336.45898 * 14 13 12 17 17 N 1.65601 * 107.21912 * 90.00157 * 14 13 12 18 18 C 1.46498 * 119.99713 * 270.00029 * 17 14 13 19 19 C 1.52995 * 109.47002 * 95.00233 * 18 17 14 20 20 C 1.50709 * 109.47041 * 179.97438 * 19 18 17 21 21 O 1.20821 * 119.99696 * 359.97438 * 20 19 18 22 22 O 1.34226 * 119.99991 * 179.97438 * 20 19 18 23 23 C 1.46496 * 120.00018 * 90.00007 * 17 14 13 24 24 C 1.53001 * 117.49885 * 188.62056 * 23 17 14 25 25 C 1.52994 * 60.00150 * 252.51124 * 24 23 17 26 26 C 1.37633 * 120.25193 * 359.44688 * 13 12 11 27 27 H 0.96999 * 119.99507 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.12705 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87873 * 179.97438 * 11 10 9 30 30 H 1.08006 * 119.74951 * 180.02562 * 12 11 10 31 31 H 1.09007 * 109.47094 * 214.99693 * 18 17 14 32 32 H 1.08999 * 109.47717 * 334.99692 * 18 17 14 33 33 H 1.08998 * 109.47011 * 299.99113 * 19 18 17 34 34 H 1.08996 * 109.47473 * 59.99975 * 19 18 17 35 35 H 0.96701 * 117.00169 * 179.97438 * 22 20 19 36 36 H 1.08998 * 115.55036 * 334.33135 * 23 17 14 37 37 H 1.08994 * 117.49735 * 0.02562 * 24 23 17 38 38 H 1.09004 * 117.49382 * 145.01497 * 24 23 17 39 39 H 1.09005 * 117.49766 * 252.51147 * 25 24 23 40 40 H 1.08999 * 117.52193 * 107.48154 * 25 24 23 41 41 H 1.07994 * 120.13173 * 180.25598 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3521 -2.4070 -0.3747 10 6 0.2209 -2.3624 -1.2106 11 6 -0.4091 -3.5318 -1.5699 12 6 0.0671 -4.7509 -1.1119 13 6 1.1774 -4.8063 -0.2840 14 16 1.7637 -6.3639 0.2947 15 8 2.4895 -6.1013 1.4878 16 8 0.6583 -7.2552 0.2376 17 7 2.8660 -6.9146 -0.8116 18 6 2.4241 -7.7438 -1.9356 19 6 2.1847 -6.8578 -3.1597 20 6 1.7307 -7.7110 -4.3162 21 8 1.6114 -8.9050 -4.1756 22 8 1.4589 -7.1442 -5.5022 23 6 4.2831 -6.5725 -0.6664 24 6 5.2195 -6.9363 -1.8203 25 6 5.2760 -7.7261 -0.5112 26 6 1.8267 -3.6498 0.0836 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1514 -1.4140 -1.5688 29 1 -1.2777 -3.5000 -2.2109 30 1 -0.4334 -5.6639 -1.3992 31 1 3.1920 -8.4823 -2.1662 32 1 1.4982 -8.2534 -1.6692 33 1 1.4168 -6.1194 -2.9292 34 1 3.1106 -6.3483 -3.4262 35 1 1.1713 -7.7321 -6.2141 36 1 4.4910 -5.6526 -0.1199 37 1 4.7812 -7.4298 -2.6877 38 1 6.0437 -6.2554 -2.0334 39 1 6.1374 -7.5650 0.1370 40 1 4.8749 -8.7396 -0.5167 41 1 2.6941 -3.6956 0.7254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794908029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:20 Heat of formation + Delta-G solvation = -120.355182 kcal Electronic energy + Delta-G solvation = -27853.408777 eV Core-core repulsion = 23825.907024 eV Total energy + Delta-G solvation = -4027.501753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.38870 -38.37645 -37.69880 -36.84103 -36.25649 -35.36869 -34.02586 -33.87426 -30.63023 -30.12419 -29.85097 -25.54380 -25.07855 -22.49150 -22.02439 -21.70327 -21.05890 -20.80760 -18.81309 -18.28491 -18.01193 -17.44909 -16.81394 -16.12243 -15.98434 -15.74366 -15.25521 -15.00303 -14.72206 -14.50803 -13.70036 -13.59983 -13.50075 -13.39465 -12.88739 -12.66896 -12.49481 -12.03349 -11.84565 -11.76460 -11.65885 -11.62508 -11.54181 -11.46491 -11.40875 -11.20021 -11.07953 -11.02788 -10.93034 -10.70903 -10.61630 -10.40031 -9.81361 -9.64365 -9.39993 -8.76539 -8.08970 -7.75870 -6.97191 -4.58397 0.83171 2.09437 2.12608 2.57533 2.83455 2.97601 3.00305 3.03621 3.39386 3.76546 3.79249 4.20822 4.35702 4.54330 4.67590 4.74543 4.86087 4.94019 5.06172 5.17216 5.25432 5.36408 5.46457 5.55416 5.70452 5.76615 5.94507 5.99196 6.04748 6.10319 6.21964 6.37463 6.55277 6.61032 6.71569 6.85761 6.99681 7.16229 7.32050 7.67160 7.75288 7.76958 7.89049 8.35076 8.62086 8.66432 9.98280 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.003951 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.002235 B = 7085.270824 C = 7685.680924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.093 3.907 10 C -0.118 4.118 11 C -0.118 4.118 12 C -0.153 4.153 13 C -0.630 4.630 14 S 2.684 3.316 15 O -0.961 6.961 16 O -0.968 6.968 17 N -0.971 5.971 18 C 0.127 3.873 19 C -0.147 4.147 20 C 0.487 3.513 21 O -0.519 6.519 22 O -0.515 6.515 23 C 0.090 3.910 24 C -0.186 4.186 25 C -0.192 4.192 26 C -0.125 4.125 27 H 0.284 0.716 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.408 0.592 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 -8.852 -7.958 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.090 3.910 10 C -0.137 4.137 11 C -0.138 4.138 12 C -0.174 4.174 13 C -0.722 4.722 14 S 2.782 3.218 15 O -0.951 6.951 16 O -0.959 6.959 17 N -0.803 5.803 18 C 0.001 3.999 19 C -0.186 4.186 20 C 0.330 3.670 21 O -0.408 6.408 22 O -0.326 6.326 23 C -0.017 4.017 24 C -0.225 4.225 25 C -0.231 4.231 26 C -0.146 4.146 27 H 0.095 0.905 28 H 0.143 0.857 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.267 0.733 36 H 0.157 0.843 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.360 -9.233 -6.782 13.103 hybrid contribution -0.073 1.129 -1.018 1.522 sum 6.287 -8.103 -7.800 12.885 Atomic orbital electron populations 1.69788 1.07705 1.29635 1.34525 1.25947 0.94772 1.01621 0.92023 0.86203 0.81009 0.80539 0.78719 1.18206 1.19589 1.19814 1.19646 0.98423 0.90978 1.39740 0.89854 1.17681 0.91784 0.91991 0.89590 1.21648 0.97561 0.97147 0.97390 1.20806 0.99203 0.93106 1.00638 1.20050 0.97500 0.97403 1.02433 1.29767 1.09147 1.17804 1.15498 1.01979 0.72379 0.74477 0.72958 1.93534 1.72609 1.86159 1.42843 1.93517 1.51561 1.64389 1.86388 1.57334 1.16958 1.64643 1.41338 1.21081 1.02840 0.91932 0.84019 1.22053 1.05757 0.99725 0.91085 1.23370 0.73013 0.87298 0.83353 1.90724 1.49436 1.16980 1.83646 1.84577 1.79466 1.46339 1.22215 1.21432 0.77824 0.99186 1.03219 1.23355 1.02137 1.04047 0.92919 1.23390 1.02090 0.97612 1.00018 1.20717 1.01033 0.91684 1.01214 0.90534 0.85734 0.88369 0.87742 0.89171 0.87652 0.86195 0.86625 0.73300 0.84267 0.88344 0.87817 0.87927 0.88496 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.28 10.95 55.55 0.61 -18.67 16 2 C 0.07 1.76 5.14 -17.34 -0.09 1.67 16 3 Si 0.91 17.52 29.59 -169.99 -5.03 12.49 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.34 9.05 -37.74 -0.34 -11.68 16 8 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 9 C 0.09 2.31 5.58 -106.82 -0.60 1.71 16 10 C -0.12 -2.82 8.70 -38.87 -0.34 -3.15 16 11 C -0.12 -2.54 10.02 -39.66 -0.40 -2.93 16 12 C -0.15 -3.15 8.43 -39.29 -0.33 -3.48 16 13 C -0.63 -13.15 5.96 -39.66 -0.24 -13.39 16 14 S 2.68 49.78 5.69 -107.50 -0.61 49.17 16 15 O -0.96 -19.90 16.41 -57.17 -0.94 -20.84 16 16 O -0.97 -19.57 15.82 -57.17 -0.90 -20.47 16 17 N -0.97 -13.88 3.12 -107.31 -0.33 -14.22 16 18 C 0.13 1.62 4.24 -4.05 -0.02 1.61 16 19 C -0.15 -1.73 5.91 -27.88 -0.16 -1.90 16 20 C 0.49 5.71 8.33 36.01 0.30 6.01 16 21 O -0.52 -7.27 16.74 -18.75 -0.31 -7.58 16 22 O -0.51 -4.92 13.42 -39.25 -0.53 -5.45 16 23 C 0.09 1.13 6.10 -67.93 -0.41 0.71 16 24 C -0.19 -1.77 9.26 -26.73 -0.25 -2.02 16 25 C -0.19 -1.97 10.12 -26.73 -0.27 -2.24 16 26 C -0.13 -2.86 9.26 -38.87 -0.36 -3.22 16 27 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 28 H 0.12 3.05 6.15 -52.49 -0.32 2.73 16 29 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.10 1.96 7.60 -52.48 -0.40 1.56 16 31 H 0.09 0.99 6.52 -51.92 -0.34 0.65 16 32 H 0.11 1.48 6.87 -51.93 -0.36 1.12 16 33 H 0.12 1.57 7.00 -51.93 -0.36 1.20 16 34 H 0.12 1.17 6.96 -51.93 -0.36 0.81 16 35 H 0.41 2.07 9.10 45.56 0.41 2.48 16 36 H 0.14 1.78 7.98 -51.93 -0.41 1.36 16 37 H 0.10 0.88 5.74 -51.93 -0.30 0.58 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 0.98 8.06 -51.93 -0.42 0.56 16 41 H 0.11 2.42 7.61 -52.49 -0.40 2.02 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -31.40 359.31 -10.22 -41.62 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.08 Total: 10.85 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: -3.50 Total: -32.32 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.27 Total: -32.89 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -2.68 Total: -54.34 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 49.78 SS G_CDS: -0.61 Total: 49.17 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.40 -10.22 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794908029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.735 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds