Wall clock time and date at job start Tue Mar 31 2020 22:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46997 * 299.99848 * 3 2 1 6 6 H 1.48501 * 109.47532 * 59.99850 * 3 2 1 7 7 C 1.39943 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00048 * 197.86519 * 7 2 1 9 9 C 1.41392 * 119.99806 * 17.87299 * 7 2 1 10 10 C 1.40728 * 120.24699 * 24.37657 * 9 7 2 11 11 C 1.37599 * 119.74830 * 179.97438 * 10 9 7 12 12 C 1.38659 * 120.24614 * 359.97438 * 11 10 9 13 13 C 1.38611 * 120.49960 * 0.27581 * 12 11 10 14 14 S 1.76201 * 119.87355 * 179.70252 * 13 12 11 15 15 O 1.42100 * 106.40166 * 203.54182 * 14 13 12 16 16 O 1.42107 * 106.40274 * 336.45898 * 14 13 12 17 17 N 1.65601 * 107.21912 * 90.00157 * 14 13 12 18 18 C 1.46498 * 119.99713 * 270.00029 * 17 14 13 19 19 C 1.52995 * 109.47002 * 95.00233 * 18 17 14 20 20 C 1.50709 * 109.47041 * 179.97438 * 19 18 17 21 21 O 1.20821 * 119.99696 * 359.97438 * 20 19 18 22 22 O 1.34226 * 119.99991 * 179.97438 * 20 19 18 23 23 C 1.46496 * 120.00018 * 90.00007 * 17 14 13 24 24 C 1.53001 * 117.49885 * 188.62056 * 23 17 14 25 25 C 1.52994 * 60.00150 * 252.51124 * 24 23 17 26 26 C 1.37633 * 120.25193 * 359.44688 * 13 12 11 27 27 H 0.96999 * 119.99507 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.12705 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87873 * 179.97438 * 11 10 9 30 30 H 1.08006 * 119.74951 * 180.02562 * 12 11 10 31 31 H 1.09007 * 109.47094 * 214.99693 * 18 17 14 32 32 H 1.08999 * 109.47717 * 334.99692 * 18 17 14 33 33 H 1.08998 * 109.47011 * 299.99113 * 19 18 17 34 34 H 1.08996 * 109.47473 * 59.99975 * 19 18 17 35 35 H 0.96701 * 117.00169 * 179.97438 * 22 20 19 36 36 H 1.08998 * 115.55036 * 334.33135 * 23 17 14 37 37 H 1.08994 * 117.49735 * 0.02562 * 24 23 17 38 38 H 1.09004 * 117.49382 * 145.01497 * 24 23 17 39 39 H 1.09005 * 117.49766 * 252.51147 * 25 24 23 40 40 H 1.08999 * 117.52193 * 107.48154 * 25 24 23 41 41 H 1.07994 * 120.13173 * 180.25598 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3521 -2.4070 -0.3747 10 6 0.2209 -2.3624 -1.2106 11 6 -0.4091 -3.5318 -1.5699 12 6 0.0671 -4.7509 -1.1119 13 6 1.1774 -4.8063 -0.2840 14 16 1.7637 -6.3639 0.2947 15 8 2.4895 -6.1013 1.4878 16 8 0.6583 -7.2552 0.2376 17 7 2.8660 -6.9146 -0.8116 18 6 2.4241 -7.7438 -1.9356 19 6 2.1847 -6.8578 -3.1597 20 6 1.7307 -7.7110 -4.3162 21 8 1.6114 -8.9050 -4.1756 22 8 1.4589 -7.1442 -5.5022 23 6 4.2831 -6.5725 -0.6664 24 6 5.2195 -6.9363 -1.8203 25 6 5.2760 -7.7261 -0.5112 26 6 1.8267 -3.6498 0.0836 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1514 -1.4140 -1.5688 29 1 -1.2777 -3.5000 -2.2109 30 1 -0.4334 -5.6639 -1.3992 31 1 3.1920 -8.4823 -2.1662 32 1 1.4982 -8.2534 -1.6692 33 1 1.4168 -6.1194 -2.9292 34 1 3.1106 -6.3483 -3.4262 35 1 1.1713 -7.7321 -6.2141 36 1 4.4910 -5.6526 -0.1199 37 1 4.7812 -7.4298 -2.6877 38 1 6.0437 -6.2554 -2.0334 39 1 6.1374 -7.5650 0.1370 40 1 4.8749 -8.7396 -0.5167 41 1 2.6941 -3.6956 0.7254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794908029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:19 Heat of formation + Delta-G solvation = -140.887485 kcal Electronic energy + Delta-G solvation = -27854.299124 eV Core-core repulsion = 23825.907024 eV Total energy + Delta-G solvation = -4028.392100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29963 -39.45634 -39.31563 -38.39602 -37.12633 -36.95593 -35.66980 -34.97654 -31.93312 -31.63710 -31.58153 -27.34028 -26.06279 -23.68868 -23.29196 -22.82494 -22.63839 -21.88142 -20.18485 -19.63635 -18.99005 -18.85672 -17.93557 -17.64679 -17.10246 -16.93837 -16.80527 -16.52649 -16.09603 -15.64683 -15.22293 -15.07630 -14.66212 -14.53281 -14.31126 -13.83802 -13.72404 -13.46117 -13.31599 -13.27022 -13.14850 -13.08750 -13.05887 -12.84353 -12.59285 -12.52759 -12.28985 -12.19489 -12.13950 -12.10587 -11.65773 -11.53612 -11.40301 -11.19151 -11.13398 -9.89523 -9.77945 -9.54932 -8.72423 -6.43725 -0.63443 0.40199 0.84680 1.19186 1.39229 1.45678 1.54280 1.79448 2.18679 2.26980 2.56004 2.69516 2.98434 3.28747 3.51210 3.67678 3.74544 3.90539 4.06241 4.11078 4.24036 4.31371 4.37100 4.43090 4.54754 4.73910 4.79509 4.85577 4.90883 4.91880 5.05234 5.11400 5.20561 5.24083 5.31714 5.41401 5.55401 5.59288 5.63262 5.89908 5.95059 6.11113 6.53949 6.81300 6.85712 7.00671 8.25722 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.003951 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.002235 B = 7085.270824 C = 7685.680924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.269 1.269 7 C -0.494 4.494 8 H 0.082 0.918 9 C 0.066 3.934 10 C -0.139 4.139 11 C -0.119 4.119 12 C -0.149 4.149 13 C -0.635 4.635 14 S 2.708 3.292 15 O -0.985 6.985 16 O -0.985 6.985 17 N -0.959 5.959 18 C 0.124 3.876 19 C -0.147 4.147 20 C 0.497 3.503 21 O -0.544 6.544 22 O -0.512 6.512 23 C 0.051 3.949 24 C -0.162 4.162 25 C -0.185 4.185 26 C -0.140 4.140 27 H 0.291 0.709 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.429 0.571 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.932 -9.549 -9.370 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.194 1.194 7 C -0.523 4.523 8 H 0.100 0.900 9 C 0.062 3.938 10 C -0.159 4.159 11 C -0.138 4.138 12 C -0.170 4.170 13 C -0.724 4.724 14 S 2.804 3.196 15 O -0.975 6.975 16 O -0.975 6.975 17 N -0.794 5.794 18 C -0.001 4.001 19 C -0.186 4.186 20 C 0.340 3.660 21 O -0.435 6.435 22 O -0.326 6.326 23 C -0.055 4.055 24 C -0.201 4.201 25 C -0.224 4.224 26 C -0.161 4.161 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.152 0.848 35 H 0.291 0.709 36 H 0.147 0.853 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.549 -9.912 -8.221 14.927 hybrid contribution -0.452 1.184 -0.648 1.423 sum 7.097 -8.729 -8.869 14.325 Atomic orbital electron populations 1.69832 1.09069 1.30923 1.35199 1.26765 0.95471 1.04625 0.91026 0.85139 0.79582 0.76000 0.78935 1.17874 1.18671 1.19379 1.19904 0.98725 0.92140 1.41548 0.89952 1.18019 0.92567 0.92898 0.90277 1.21640 0.98255 0.97583 0.98454 1.21104 0.99627 0.92593 1.00498 1.20369 0.97091 0.97973 1.01539 1.30201 1.08877 1.18798 1.14521 1.01183 0.72241 0.73313 0.72912 1.93496 1.73010 1.86297 1.44732 1.93489 1.53021 1.64134 1.86849 1.56914 1.17113 1.64134 1.41212 1.21225 1.03068 0.92194 0.83638 1.22004 1.06317 0.99309 0.90985 1.23181 0.72397 0.86653 0.83760 1.90723 1.50680 1.17959 1.84170 1.84527 1.79002 1.46828 1.22205 1.21667 0.76990 1.00312 1.06487 1.23478 1.00895 1.03253 0.92463 1.23502 1.01231 0.96932 1.00714 1.20787 1.01559 0.91957 1.01788 0.89798 0.86962 0.85719 0.85544 0.86832 0.88945 0.87503 0.84769 0.70911 0.85285 0.87250 0.86093 0.86652 0.88115 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.12 10.95 21.83 0.24 -40.88 16 2 C 0.04 1.75 5.14 85.26 0.44 2.19 16 3 Si 0.98 36.16 29.59 68.60 2.03 38.19 16 4 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 5 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 6 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 7 C -0.49 -25.26 9.05 23.46 0.21 -25.05 16 8 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 9 C 0.07 3.36 5.58 -21.29 -0.12 3.24 16 10 C -0.14 -6.85 8.70 22.73 0.20 -6.65 16 11 C -0.12 -5.10 10.02 22.22 0.22 -4.88 16 12 C -0.15 -6.08 8.43 22.46 0.19 -5.89 16 13 C -0.63 -26.65 5.96 22.22 0.13 -26.52 16 14 S 2.71 99.90 5.69 -56.49 -0.32 99.58 16 15 O -0.99 -41.13 16.41 -128.00 -2.10 -43.23 16 16 O -0.98 -39.27 15.82 -128.00 -2.03 -41.30 16 17 N -0.96 -26.32 3.12 -493.40 -1.54 -27.86 16 18 C 0.12 2.94 4.24 86.38 0.37 3.31 16 19 C -0.15 -3.18 5.91 29.85 0.18 -3.00 16 20 C 0.50 10.55 8.33 71.24 0.59 11.14 16 21 O -0.54 -14.19 16.74 21.98 0.37 -13.82 16 22 O -0.51 -8.50 13.42 -51.38 -0.69 -9.19 16 23 C 0.05 1.21 6.10 44.99 0.27 1.48 16 24 C -0.16 -2.60 9.26 30.59 0.28 -2.32 16 25 C -0.18 -3.32 10.12 30.59 0.31 -3.01 16 26 C -0.14 -6.58 9.26 22.73 0.21 -6.37 16 27 H 0.29 13.04 8.30 -92.71 -0.77 12.28 16 28 H 0.11 5.71 6.15 -2.91 -0.02 5.69 16 29 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 30 H 0.13 4.56 7.60 -2.91 -0.02 4.54 16 31 H 0.11 2.19 6.52 -2.38 -0.02 2.17 16 32 H 0.09 2.47 6.87 -2.39 -0.02 2.46 16 33 H 0.11 2.64 7.00 -2.39 -0.02 2.63 16 34 H 0.13 2.37 6.96 -2.39 -0.02 2.35 16 35 H 0.43 3.20 9.10 -74.06 -0.67 2.52 16 36 H 0.13 3.27 7.98 -2.39 -0.02 3.25 16 37 H 0.11 1.54 5.74 -2.39 -0.01 1.52 16 38 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.10 1.76 8.06 -2.39 -0.02 1.74 16 41 H 0.11 5.05 7.61 -2.91 -0.02 5.03 16 Total: -1.00 -68.54 359.31 -0.14 -68.68 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.41 Total: 32.19 kcal Atomic # 6 Polarization: -65.83 SS G_CDS: 3.49 Total: -62.35 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -1.30 Total: -68.75 kcal Atomic # 8 Polarization: -103.09 SS G_CDS: -4.45 Total: -107.54 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Atomic # 16 Polarization: 99.90 SS G_CDS: -0.32 Total: 99.58 kcal Total: -68.54 -0.14 -68.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794908029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.205 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds