Wall clock time and date at job start Tue Mar 31 2020 22:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48497 * 109.47382 * 240.00352 * 3 2 1 5 5 H 1.48504 * 109.46755 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46859 * 120.00135 * 3 2 1 7 7 C 1.39941 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00034 * 162.22698 * 7 2 1 9 9 C 1.41391 * 120.00110 * 342.22113 * 7 2 1 10 10 C 1.40734 * 120.24735 * 335.27961 * 9 7 2 11 11 C 1.37590 * 119.74670 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.25346 * 359.72438 * 11 10 9 13 13 C 1.38617 * 120.49246 * 0.55313 * 12 11 10 14 14 S 1.76200 * 119.87054 * 179.72014 * 13 12 11 15 15 O 1.42104 * 106.40392 * 156.18707 * 14 13 12 16 16 O 1.42107 * 106.40530 * 23.26816 * 14 13 12 17 17 N 1.65597 * 107.22264 * 269.72558 * 14 13 12 18 18 C 1.46504 * 119.99945 * 64.99899 * 17 14 13 19 19 C 1.50693 * 109.47194 * 165.00371 * 18 17 14 20 20 O 1.20830 * 120.00364 * 359.97438 * 19 18 17 21 21 O 1.34232 * 119.99973 * 179.72835 * 19 18 17 22 22 C 1.45200 * 117.00163 * 180.27583 * 21 19 18 23 23 C 1.52995 * 109.47384 * 179.97438 * 22 21 19 24 24 C 1.52996 * 117.50071 * 243.62159 * 23 22 21 25 25 C 1.52993 * 59.99989 * 252.50764 * 24 23 22 26 26 C 1.37634 * 120.25343 * 359.44647 * 13 12 11 27 27 H 0.96997 * 120.00290 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.12223 * 359.97438 * 10 9 7 29 29 H 1.08007 * 119.87700 * 180.02562 * 11 10 9 30 30 H 1.07993 * 119.75230 * 180.29509 * 12 11 10 31 31 H 0.96998 * 120.00616 * 245.00567 * 17 14 13 32 32 H 1.09005 * 109.46681 * 45.00210 * 18 17 14 33 33 H 1.09001 * 109.47274 * 285.00862 * 18 17 14 34 34 H 1.09009 * 109.47004 * 299.99955 * 22 21 19 35 35 H 1.08995 * 109.47171 * 59.99494 * 22 21 19 36 36 H 1.09006 * 115.54812 * 29.32914 * 23 22 21 37 37 H 1.09000 * 117.50144 * 359.97438 * 24 23 22 38 38 H 1.09004 * 117.49881 * 145.01703 * 24 23 22 39 39 H 1.09009 * 117.49983 * 252.50740 * 25 24 23 40 40 H 1.09003 * 117.50292 * 107.48777 * 25 24 23 41 41 H 1.07996 * 120.13080 * 180.24831 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2771 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0493 -1.2341 -0.2861 9 6 1.3517 -2.4074 0.3728 10 6 0.2235 -2.3641 1.2130 11 6 -0.4069 -3.5337 1.5703 12 6 0.0619 -4.7515 1.1012 13 6 1.1756 -4.8064 0.2777 14 16 1.7616 -6.3634 -0.3030 15 8 2.4875 -6.0994 -1.4958 16 8 0.6561 -7.2545 -0.2470 17 7 2.8639 -6.9157 0.8026 18 6 2.4329 -7.2508 2.1621 19 6 3.5064 -8.0586 2.8446 20 8 4.5267 -8.3273 2.2558 21 8 3.3313 -8.4754 4.1085 22 6 4.4096 -9.2437 4.7047 23 6 4.0316 -9.6268 6.1368 24 6 4.8908 -9.0615 7.2695 25 6 4.9908 -10.5427 6.8997 26 6 1.8220 -3.6491 -0.0926 27 1 -0.4850 0.8400 0.0004 28 1 -0.1455 -1.4164 1.5766 29 1 -1.2731 -3.5029 2.2147 30 1 -0.4420 -5.6642 1.3829 31 1 3.7949 -7.0173 0.5501 32 1 1.5125 -7.8331 2.1182 33 1 2.2560 -6.3335 2.7237 34 1 4.5787 -10.1474 4.1190 35 1 5.3193 -8.6436 4.7175 36 1 2.9647 -9.7463 6.3255 37 1 5.7257 -8.4170 6.9944 38 1 4.3892 -8.8087 8.2037 39 1 4.5549 -11.2645 7.5905 40 1 5.8911 -10.8724 6.3812 41 1 2.6871 -3.6940 -0.7375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795093548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:47 Heat of formation + Delta-G solvation = -118.642961 kcal Electronic energy + Delta-G solvation = -26234.364768 eV Core-core repulsion = 22206.937263 eV Total energy + Delta-G solvation = -4027.427505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.73612 -38.04262 -37.68649 -36.76778 -36.47257 -35.38660 -34.76083 -33.87793 -30.11897 -29.84496 -29.02439 -26.80647 -25.52410 -22.83391 -21.96427 -21.46307 -21.16401 -21.01158 -19.40932 -18.27203 -17.74040 -17.52569 -16.86306 -16.43830 -16.09017 -15.94483 -15.24538 -15.07077 -14.86545 -14.58315 -14.31139 -14.20789 -13.52468 -13.38127 -13.06826 -12.96078 -12.61547 -11.99149 -11.97886 -11.82669 -11.76441 -11.64660 -11.60756 -11.41674 -11.40761 -11.32837 -11.11048 -11.07609 -10.89475 -10.65266 -10.63688 -10.33086 -9.93957 -9.76500 -9.37654 -9.34579 -8.09327 -7.74576 -6.95414 -4.56877 0.84761 1.95876 2.12874 2.29801 2.60462 2.98103 3.00145 3.05723 3.32303 3.45269 3.80829 4.11159 4.18124 4.36855 4.40153 4.42888 4.70150 4.79792 4.87227 5.01153 5.07954 5.14067 5.20246 5.21630 5.34599 5.45137 5.61053 5.66364 5.74316 6.00914 6.12851 6.14333 6.62444 6.71865 6.78529 6.98927 7.06769 7.17512 7.33372 7.49153 7.67834 7.76741 7.90432 8.36250 8.63336 8.67803 10.00227 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.002696 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.471409 B =10383.574557 C =11498.793581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.091 3.909 10 C -0.117 4.117 11 C -0.120 4.120 12 C -0.151 4.151 13 C -0.633 4.633 14 S 2.693 3.307 15 O -0.962 6.962 16 O -0.971 6.971 17 N -1.116 6.116 18 C 0.130 3.870 19 C 0.466 3.534 20 O -0.502 6.502 21 O -0.350 6.350 22 C 0.098 3.902 23 C -0.160 4.160 24 C -0.176 4.176 25 C -0.170 4.170 26 C -0.124 4.124 27 H 0.285 0.715 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.424 0.576 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 -12.998 12.431 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.137 4.137 11 C -0.139 4.139 12 C -0.173 4.173 13 C -0.725 4.725 14 S 2.789 3.211 15 O -0.953 6.953 16 O -0.961 6.961 17 N -0.877 5.877 18 C 0.002 3.998 19 C 0.308 3.692 20 O -0.389 6.389 21 O -0.266 6.266 22 C 0.024 3.976 23 C -0.178 4.178 24 C -0.212 4.212 25 C -0.207 4.207 26 C -0.145 4.145 27 H 0.096 0.904 28 H 0.142 0.858 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.260 0.740 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.428 -13.405 11.548 18.507 hybrid contribution 0.737 1.367 0.336 1.589 sum 6.165 -12.038 11.884 18.004 Atomic orbital electron populations 1.69768 1.07670 1.29832 1.34459 1.25945 0.94796 1.01598 0.92037 0.86280 0.80111 0.79744 0.80172 1.18781 1.20220 1.18699 1.19590 0.98381 0.90991 1.39939 0.89913 1.17688 0.91854 0.92011 0.89673 1.21649 0.97558 0.97170 0.97307 1.20815 0.99325 0.93122 1.00647 1.20103 0.97295 0.97597 1.02271 1.29681 1.09267 1.17623 1.15940 1.01650 0.72480 0.74524 0.72456 1.93563 1.72755 1.86171 1.42781 1.93518 1.52108 1.64162 1.86323 1.55623 1.25655 1.83475 1.22930 1.20618 0.95316 1.00293 0.83551 1.23593 0.87995 0.77578 0.80050 1.90661 1.29054 1.53944 1.65264 1.86469 1.46237 1.65626 1.28309 1.22585 0.88144 0.95093 0.91760 1.22144 0.99149 1.05578 0.90909 1.23131 1.02390 0.96313 0.99414 1.23008 1.01049 0.93763 1.02868 1.20769 1.01072 0.91700 1.00990 0.90431 0.85754 0.88266 0.87390 0.73977 0.85886 0.86616 0.90531 0.90803 0.86202 0.88421 0.88212 0.88046 0.88449 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.46 10.97 55.55 0.61 -18.85 16 2 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 3 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.28 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.46 -11.59 9.05 -37.74 -0.34 -11.94 16 8 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 9 C 0.09 2.30 5.57 -106.82 -0.60 1.71 16 10 C -0.12 -2.82 8.70 -38.88 -0.34 -3.15 16 11 C -0.12 -2.55 10.02 -39.66 -0.40 -2.95 16 12 C -0.15 -3.08 9.53 -39.29 -0.37 -3.45 16 13 C -0.63 -13.18 5.94 -39.66 -0.24 -13.42 16 14 S 2.69 48.77 5.73 -107.50 -0.62 48.15 16 15 O -0.96 -20.07 17.27 -57.17 -0.99 -21.05 16 16 O -0.97 -18.81 16.73 -57.17 -0.96 -19.77 16 17 N -1.12 -16.10 5.93 -11.65 -0.07 -16.17 16 18 C 0.13 1.57 6.81 -5.20 -0.04 1.54 16 19 C 0.47 5.77 8.03 36.00 0.29 6.06 16 20 O -0.50 -7.30 15.48 -18.75 -0.29 -7.59 16 21 O -0.35 -3.83 10.22 -39.26 -0.40 -4.23 16 22 C 0.10 0.89 5.75 37.16 0.21 1.10 16 23 C -0.16 -1.16 6.07 -90.63 -0.55 -1.71 16 24 C -0.18 -1.11 10.18 -26.74 -0.27 -1.38 16 25 C -0.17 -0.97 10.25 -26.74 -0.27 -1.24 16 26 C -0.12 -2.90 9.26 -38.87 -0.36 -3.26 16 27 H 0.28 6.35 8.30 -40.82 -0.34 6.02 16 28 H 0.12 3.05 6.18 -52.48 -0.32 2.73 16 29 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.11 1.91 7.59 -52.49 -0.40 1.52 16 31 H 0.42 5.83 7.71 -34.47 -0.27 5.57 16 32 H 0.12 1.30 7.75 -51.93 -0.40 0.90 16 33 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 0.67 8.13 -51.92 -0.42 0.25 16 35 H 0.07 0.66 7.87 -51.93 -0.41 0.26 16 36 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.11 2.54 7.60 -52.49 -0.40 2.14 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -31.11 369.38 -10.66 -41.77 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -5.12 Total: 9.79 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: -3.36 Total: -30.39 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.54 Total: -35.03 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -2.64 Total: -52.65 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 48.77 SS G_CDS: -0.62 Total: 48.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.11 -10.66 -41.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795093548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.875 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds