Wall clock time and date at job start Tue Mar 31 2020 22:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48497 * 109.47382 * 240.00352 * 3 2 1 5 5 H 1.48504 * 109.46755 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46859 * 120.00135 * 3 2 1 7 7 C 1.39941 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00034 * 162.22698 * 7 2 1 9 9 C 1.41391 * 120.00110 * 342.22113 * 7 2 1 10 10 C 1.40734 * 120.24735 * 335.27961 * 9 7 2 11 11 C 1.37590 * 119.74670 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.25346 * 359.72438 * 11 10 9 13 13 C 1.38617 * 120.49246 * 0.55313 * 12 11 10 14 14 S 1.76200 * 119.87054 * 179.72014 * 13 12 11 15 15 O 1.42104 * 106.40392 * 156.18707 * 14 13 12 16 16 O 1.42107 * 106.40530 * 23.26816 * 14 13 12 17 17 N 1.65597 * 107.22264 * 269.72558 * 14 13 12 18 18 C 1.46504 * 119.99945 * 64.99899 * 17 14 13 19 19 C 1.50693 * 109.47194 * 165.00371 * 18 17 14 20 20 O 1.20830 * 120.00364 * 359.97438 * 19 18 17 21 21 O 1.34232 * 119.99973 * 179.72835 * 19 18 17 22 22 C 1.45200 * 117.00163 * 180.27583 * 21 19 18 23 23 C 1.52995 * 109.47384 * 179.97438 * 22 21 19 24 24 C 1.52996 * 117.50071 * 243.62159 * 23 22 21 25 25 C 1.52993 * 59.99989 * 252.50764 * 24 23 22 26 26 C 1.37634 * 120.25343 * 359.44647 * 13 12 11 27 27 H 0.96997 * 120.00290 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.12223 * 359.97438 * 10 9 7 29 29 H 1.08007 * 119.87700 * 180.02562 * 11 10 9 30 30 H 1.07993 * 119.75230 * 180.29509 * 12 11 10 31 31 H 0.96998 * 120.00616 * 245.00567 * 17 14 13 32 32 H 1.09005 * 109.46681 * 45.00210 * 18 17 14 33 33 H 1.09001 * 109.47274 * 285.00862 * 18 17 14 34 34 H 1.09009 * 109.47004 * 299.99955 * 22 21 19 35 35 H 1.08995 * 109.47171 * 59.99494 * 22 21 19 36 36 H 1.09006 * 115.54812 * 29.32914 * 23 22 21 37 37 H 1.09000 * 117.50144 * 359.97438 * 24 23 22 38 38 H 1.09004 * 117.49881 * 145.01703 * 24 23 22 39 39 H 1.09009 * 117.49983 * 252.50740 * 25 24 23 40 40 H 1.09003 * 117.50292 * 107.48777 * 25 24 23 41 41 H 1.07996 * 120.13080 * 180.24831 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2771 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0493 -1.2341 -0.2861 9 6 1.3517 -2.4074 0.3728 10 6 0.2235 -2.3641 1.2130 11 6 -0.4069 -3.5337 1.5703 12 6 0.0619 -4.7515 1.1012 13 6 1.1756 -4.8064 0.2777 14 16 1.7616 -6.3634 -0.3030 15 8 2.4875 -6.0994 -1.4958 16 8 0.6561 -7.2545 -0.2470 17 7 2.8639 -6.9157 0.8026 18 6 2.4329 -7.2508 2.1621 19 6 3.5064 -8.0586 2.8446 20 8 4.5267 -8.3273 2.2558 21 8 3.3313 -8.4754 4.1085 22 6 4.4096 -9.2437 4.7047 23 6 4.0316 -9.6268 6.1368 24 6 4.8908 -9.0615 7.2695 25 6 4.9908 -10.5427 6.8997 26 6 1.8220 -3.6491 -0.0926 27 1 -0.4850 0.8400 0.0004 28 1 -0.1455 -1.4164 1.5766 29 1 -1.2731 -3.5029 2.2147 30 1 -0.4420 -5.6642 1.3829 31 1 3.7949 -7.0173 0.5501 32 1 1.5125 -7.8331 2.1182 33 1 2.2560 -6.3335 2.7237 34 1 4.5787 -10.1474 4.1190 35 1 5.3193 -8.6436 4.7175 36 1 2.9647 -9.7463 6.3255 37 1 5.7257 -8.4170 6.9944 38 1 4.3892 -8.8087 8.2037 39 1 4.5549 -11.2645 7.5905 40 1 5.8911 -10.8724 6.3812 41 1 2.6871 -3.6940 -0.7375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795093548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:46 Heat of formation + Delta-G solvation = -137.920169 kcal Electronic energy + Delta-G solvation = -26235.200691 eV Core-core repulsion = 22206.937263 eV Total energy + Delta-G solvation = -4028.263428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67745 -39.43082 -38.72432 -38.31602 -37.28364 -36.95633 -35.91484 -35.64267 -31.89377 -31.57777 -29.89094 -27.70564 -27.32318 -23.67044 -23.29035 -22.80668 -22.36574 -21.75077 -20.78605 -19.78509 -19.09546 -18.50478 -17.88278 -17.72991 -17.59846 -17.01068 -16.83523 -16.51859 -16.17644 -15.51445 -15.40206 -15.13039 -15.03913 -14.94847 -14.28513 -14.01892 -13.87352 -13.70049 -13.27420 -13.25635 -13.19225 -13.07898 -13.05026 -12.85485 -12.55538 -12.45605 -12.42701 -12.20854 -12.10907 -11.87349 -11.56126 -11.41451 -11.33162 -11.12745 -10.91192 -10.68960 -9.83833 -9.53607 -8.72202 -6.43925 -0.62317 0.40948 0.87020 0.99608 1.37444 1.39045 1.47160 1.50310 2.09910 2.18433 2.55562 2.74860 2.81444 3.36210 3.43312 3.53554 3.76341 3.88822 4.05644 4.14849 4.18299 4.27818 4.32439 4.36916 4.49567 4.50086 4.52932 4.77952 4.88415 4.93303 5.00844 5.07507 5.11434 5.21671 5.23125 5.32841 5.42715 5.58213 5.86924 5.91712 5.95752 6.13243 6.54342 6.55040 6.81259 6.86246 8.25777 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.002696 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.471409 B =10383.574557 C =11498.793581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.500 4.500 8 H 0.078 0.922 9 C 0.060 3.940 10 C -0.138 4.138 11 C -0.121 4.121 12 C -0.142 4.142 13 C -0.638 4.638 14 S 2.729 3.271 15 O -0.990 6.990 16 O -0.976 6.976 17 N -1.107 6.107 18 C 0.119 3.881 19 C 0.472 3.528 20 O -0.528 6.528 21 O -0.348 6.348 22 C 0.093 3.907 23 C -0.172 4.172 24 C -0.179 4.179 25 C -0.159 4.159 26 C -0.146 4.146 27 H 0.292 0.708 28 H 0.112 0.888 29 H 0.131 0.869 30 H 0.143 0.857 31 H 0.428 0.572 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.508 -14.142 13.912 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.529 4.529 8 H 0.097 0.903 9 C 0.057 3.943 10 C -0.158 4.158 11 C -0.140 4.140 12 C -0.162 4.162 13 C -0.728 4.728 14 S 2.822 3.178 15 O -0.981 6.981 16 O -0.966 6.966 17 N -0.871 5.871 18 C -0.008 4.008 19 C 0.315 3.685 20 O -0.417 6.417 21 O -0.264 6.264 22 C 0.019 3.981 23 C -0.190 4.190 24 C -0.215 4.215 25 C -0.196 4.196 26 C -0.167 4.167 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.148 0.852 30 H 0.161 0.839 31 H 0.266 0.734 32 H 0.163 0.837 33 H 0.151 0.849 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.196 -14.539 13.054 20.218 hybrid contribution 0.781 1.515 -0.040 1.705 sum 5.977 -13.024 13.013 19.357 Atomic orbital electron populations 1.69808 1.08907 1.31023 1.35210 1.26738 0.95539 1.04512 0.91108 0.85237 0.78806 0.75548 0.80086 1.18687 1.19060 1.18237 1.19835 0.98604 0.92345 1.42120 0.90344 1.18041 0.92825 0.92884 0.90530 1.21672 0.98080 0.97872 0.98178 1.21179 0.99795 0.92538 1.00502 1.20576 0.96471 0.98577 1.00621 1.30132 1.09115 1.18442 1.15091 1.00566 0.72132 0.73194 0.71879 1.93524 1.73341 1.86359 1.44874 1.93508 1.53001 1.63592 1.86538 1.55246 1.25324 1.82732 1.23754 1.20952 0.96002 1.01568 0.82237 1.23562 0.87489 0.77123 0.80331 1.90657 1.30068 1.55068 1.65931 1.86463 1.46885 1.65573 1.27474 1.22786 0.87673 0.94833 0.92773 1.22139 0.99604 1.07204 0.90019 1.23216 1.02124 0.96921 0.99277 1.23115 1.00597 0.93652 1.02213 1.20830 1.01736 0.92275 1.01865 0.89756 0.87013 0.85155 0.83904 0.73372 0.83710 0.84914 0.90378 0.91017 0.86049 0.88575 0.87400 0.86702 0.87990 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.39 10.97 21.83 0.24 -41.16 16 2 C 0.04 1.78 5.14 85.26 0.44 2.21 16 3 Si 0.98 37.00 29.59 68.60 2.03 39.03 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 6 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 7 C -0.50 -26.19 9.05 23.46 0.21 -25.98 16 8 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 9 C 0.06 3.14 5.57 -21.29 -0.12 3.02 16 10 C -0.14 -6.75 8.70 22.73 0.20 -6.55 16 11 C -0.12 -5.00 10.02 22.22 0.22 -4.77 16 12 C -0.14 -5.44 9.53 22.46 0.21 -5.22 16 13 C -0.64 -25.97 5.94 22.22 0.13 -25.83 16 14 S 2.73 94.73 5.73 -56.49 -0.32 94.40 16 15 O -0.99 -40.85 17.27 -128.00 -2.21 -43.06 16 16 O -0.98 -35.25 16.73 -128.00 -2.14 -37.40 16 17 N -1.11 -30.06 5.93 -190.79 -1.13 -31.20 16 18 C 0.12 2.59 6.81 85.63 0.58 3.17 16 19 C 0.47 10.91 8.03 71.23 0.57 11.48 16 20 O -0.53 -14.80 15.48 21.95 0.34 -14.46 16 21 O -0.35 -7.04 10.22 -51.44 -0.53 -7.56 16 22 C 0.09 1.57 5.75 71.98 0.41 1.98 16 23 C -0.17 -2.22 6.07 -10.80 -0.07 -2.28 16 24 C -0.18 -1.96 10.18 30.59 0.31 -1.64 16 25 C -0.16 -1.49 10.25 30.59 0.31 -1.18 16 26 C -0.15 -6.95 9.26 22.73 0.21 -6.74 16 27 H 0.29 13.21 8.30 -92.71 -0.77 12.45 16 28 H 0.11 5.65 6.18 -2.91 -0.02 5.63 16 29 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.14 4.47 7.59 -2.91 -0.02 4.45 16 31 H 0.43 11.30 7.71 -96.75 -0.75 10.55 16 32 H 0.15 2.56 7.75 -2.38 -0.02 2.54 16 33 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.08 1.28 8.13 -2.38 -0.02 1.26 16 35 H 0.07 1.23 7.87 -2.39 -0.02 1.21 16 36 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.10 1.07 8.03 -2.39 -0.02 1.05 16 38 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 5.07 7.60 -2.91 -0.02 5.05 16 Total: -1.00 -67.32 369.38 0.24 -67.08 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.32 Total: 32.65 kcal Atomic # 6 Polarization: -61.97 SS G_CDS: 3.64 Total: -58.34 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -0.89 Total: -72.35 kcal Atomic # 8 Polarization: -97.94 SS G_CDS: -4.54 Total: -102.48 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Atomic # 16 Polarization: 94.73 SS G_CDS: -0.32 Total: 94.40 kcal Total: -67.32 0.24 -67.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795093548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.836 kcal (2) G-P(sol) polarization free energy of solvation -67.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds