Wall clock time and date at job start Tue Mar 31 2020 22:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86796 * 120.00239 * 2 1 4 4 H 1.48500 * 109.47286 * 269.99958 * 3 2 1 5 5 H 1.48503 * 109.47072 * 29.99992 * 3 2 1 6 6 H 1.48500 * 109.46911 * 149.99673 * 3 2 1 7 7 C 1.38947 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00251 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00257 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00076 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00090 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99825 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47174 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99989 * 180.02562 * 13 12 10 15 15 S 1.71200 * 120.00392 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99899 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00108 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47046 * 180.02562 * 17 16 14 19 19 S 1.81394 * 109.46998 * 180.02562 * 18 17 16 20 20 C 1.76199 * 103.00056 * 180.02562 * 19 18 17 21 21 C 1.38975 * 120.07816 * 180.02562 * 20 19 18 22 22 C 1.38086 * 119.91892 * 179.97438 * 21 20 19 23 23 C 1.38310 * 120.07752 * 359.97438 * 22 21 20 24 24 C 1.38301 * 120.16067 * 0.02562 * 23 22 21 25 25 C 1.38081 * 120.08205 * 359.97438 * 24 23 22 26 26 H 0.97006 * 119.99934 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99990 * 359.97438 * 9 7 2 28 28 H 1.09011 * 109.47301 * 59.99801 * 12 10 9 29 29 H 1.09000 * 109.47724 * 299.99730 * 12 10 9 30 30 H 0.96995 * 119.99731 * 0.02562 * 13 12 10 31 31 H 0.97005 * 119.99945 * 359.97438 * 16 14 13 32 32 H 1.08998 * 109.46640 * 60.00225 * 17 16 14 33 33 H 1.08996 * 109.47280 * 300.00397 * 17 16 14 34 34 H 1.09000 * 109.46939 * 60.00137 * 18 17 16 35 35 H 1.09004 * 109.47160 * 299.99981 * 18 17 16 36 36 H 1.07995 * 120.04427 * 359.69664 * 21 20 19 37 37 H 1.08000 * 119.96089 * 179.97438 * 22 21 20 38 38 H 1.07995 * 119.91521 * 179.97438 * 23 22 21 39 39 H 1.07996 * 119.95950 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.04201 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2436 -4.8629 0.0022 13 7 2.1955 -5.9765 0.0027 14 6 1.7461 -7.2471 0.0027 15 16 0.0630 -7.5600 0.0028 16 7 2.6219 -8.2716 0.0037 17 6 2.1336 -9.6528 0.0043 18 6 3.3236 -10.6145 0.0060 19 16 2.7189 -12.3247 0.0060 20 6 4.2053 -13.2708 0.0088 21 6 4.1472 -14.6593 0.0090 22 6 5.3142 -15.3975 0.0106 23 6 6.5399 -14.7565 0.0117 24 6 6.6015 -13.3749 0.0115 25 6 5.4386 -12.6302 0.0099 26 1 -0.4850 0.8401 -0.0004 27 1 0.3532 -2.3906 0.0005 28 1 0.6172 -4.9212 -0.8881 29 1 0.6166 -4.9201 0.8919 30 1 3.1491 -5.7993 0.0030 31 1 3.5757 -8.0944 0.0040 32 1 1.5284 -9.8246 -0.8859 33 1 1.5276 -9.8236 0.8941 34 1 3.9283 -10.4426 0.8964 35 1 3.9299 -10.4439 -0.8836 36 1 3.1906 -15.1604 0.0123 37 1 5.2699 -16.4765 0.0112 38 1 7.4509 -15.3364 0.0134 39 1 7.5602 -12.8778 0.0127 40 1 5.4875 -11.5514 0.0102 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795162407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:48 Heat of formation + Delta-G solvation = 2.602031 kcal Electronic energy + Delta-G solvation = -22214.826470 eV Core-core repulsion = 18667.702164 eV Total energy + Delta-G solvation = -3547.124306 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.37770 -39.33382 -38.17741 -35.64396 -34.11996 -32.00837 -31.50450 -31.43473 -31.00172 -27.74649 -24.85919 -23.98972 -23.49521 -23.16464 -22.57895 -19.92295 -18.73151 -18.30553 -17.94926 -17.24831 -16.63023 -16.14247 -15.81752 -15.55300 -15.25553 -15.12305 -15.11122 -14.75351 -14.40431 -13.98090 -13.82629 -13.79744 -13.57382 -13.37651 -12.65612 -12.52866 -12.42804 -11.95273 -11.70546 -11.62985 -11.36969 -11.14242 -11.00263 -10.69093 -10.52135 -10.39025 -10.24419 -9.72913 -9.48363 -9.13440 -8.82524 -8.19997 -7.86228 -7.77159 -7.33638 -6.59360 -4.02253 0.71707 0.82119 0.87339 1.49177 1.84987 2.07831 2.64119 3.05700 3.17692 3.22363 3.22526 3.58264 3.61545 4.03976 4.06496 4.27336 4.34167 4.43191 4.61437 4.69333 4.77654 4.90514 5.01545 5.08997 5.23594 5.29742 5.42794 5.48265 5.68249 5.75699 5.80197 5.82136 5.88649 6.00958 6.01528 6.40153 6.42932 6.79410 7.35045 7.38219 7.82531 8.33655 8.94994 9.28220 9.74965 10.56846 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.001617 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.921327 B =17311.929065 C =18337.101308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.029 3.971 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.309 4.309 8 H 0.106 0.894 9 N -0.540 5.540 10 C 0.421 3.579 11 O -0.604 6.604 12 C 0.114 3.886 13 N -0.653 5.653 14 C 0.565 3.435 15 S -0.651 6.651 16 N -0.692 5.692 17 C 0.147 3.853 18 C -0.135 4.135 19 S -0.075 6.075 20 C -0.087 4.087 21 C -0.100 4.100 22 C -0.101 4.101 23 C -0.126 4.126 24 C -0.100 4.100 25 C -0.135 4.135 26 H 0.276 0.724 27 H 0.398 0.602 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.409 0.591 31 H 0.397 0.603 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.289 -27.111 0.028 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.439 4.439 8 H 0.124 0.876 9 N -0.174 5.174 10 C 0.207 3.793 11 O -0.492 6.492 12 C -0.014 4.014 13 N -0.282 5.282 14 C 0.203 3.797 15 S -0.527 6.527 16 N -0.325 5.325 17 C 0.022 3.978 18 C -0.284 4.284 19 S 0.168 5.832 20 C -0.199 4.199 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.147 4.147 24 C -0.120 4.120 25 C -0.159 4.159 26 H 0.086 0.914 27 H 0.232 0.768 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.249 0.751 31 H 0.234 0.766 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.471 -27.340 0.033 28.622 hybrid contribution 2.953 1.606 -0.008 3.361 sum 11.424 -25.734 0.025 28.156 Atomic orbital electron populations 1.69615 1.06024 1.28763 1.48393 1.25351 0.95681 1.00013 0.96464 0.85796 0.79214 0.80366 0.78556 1.20179 1.20668 1.19324 1.19729 0.93473 0.81896 1.48767 0.87639 1.41755 1.09656 1.04330 1.61637 1.19653 0.88202 0.84982 0.86496 1.90496 1.13703 1.86785 1.58234 1.21358 0.90802 0.83574 1.05650 1.44710 1.12044 1.02897 1.68571 1.22028 0.95137 0.81708 0.80849 1.93480 0.92997 1.91696 1.74527 1.44714 1.08328 1.05219 1.74287 1.21179 0.93993 0.76393 1.06263 1.23878 1.02277 0.95699 1.06505 1.85699 1.07203 0.98072 1.92185 1.21834 0.96508 0.97123 1.04482 1.20785 0.99140 0.91463 1.01012 1.21128 0.92039 1.00008 0.98886 1.21224 0.97999 0.94635 1.00839 1.21095 0.97945 0.94202 0.98716 1.21194 0.91748 0.99840 1.03094 0.91388 0.76760 0.87789 0.87783 0.75084 0.76625 0.88442 0.88445 0.88513 0.88517 0.85296 0.85390 0.85730 0.85637 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.20 13.05 55.50 0.72 -22.48 16 2 C 0.03 0.73 5.50 -17.47 -0.10 0.64 16 3 Si 0.93 20.05 29.55 -169.99 -5.02 15.03 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.31 -8.18 9.68 -14.93 -0.14 -8.32 16 8 H 0.11 2.90 7.16 -52.49 -0.38 2.53 16 9 N -0.54 -12.94 5.29 -10.97 -0.06 -12.99 16 10 C 0.42 9.18 7.85 -10.99 -0.09 9.09 16 11 O -0.60 -14.70 15.24 5.55 0.08 -14.62 16 12 C 0.11 1.96 5.61 -5.20 -0.03 1.93 16 13 N -0.65 -9.68 5.53 -63.21 -0.35 -10.03 16 14 C 0.56 7.91 7.98 -86.91 -0.69 7.22 16 15 S -0.65 -11.59 27.77 -107.50 -2.99 -14.58 16 16 N -0.69 -6.73 5.56 -62.03 -0.34 -7.08 16 17 C 0.15 1.30 5.14 -4.04 -0.02 1.28 16 18 C -0.13 -0.87 4.45 37.16 0.17 -0.70 16 19 S -0.08 -0.60 21.92 -107.50 -2.36 -2.96 16 20 C -0.09 -0.69 6.11 -39.04 -0.24 -0.93 16 21 C -0.10 -0.73 9.79 -39.36 -0.39 -1.12 16 22 C -0.10 -0.62 10.04 -39.61 -0.40 -1.01 16 23 C -0.13 -0.75 10.04 -39.53 -0.40 -1.15 16 24 C -0.10 -0.64 10.04 -39.62 -0.40 -1.03 16 25 C -0.13 -0.97 9.36 -39.37 -0.37 -1.34 16 26 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.40 9.22 7.90 -40.82 -0.32 8.90 16 28 H 0.10 1.77 7.99 -51.92 -0.41 1.36 16 29 H 0.10 1.77 7.99 -51.93 -0.42 1.36 16 30 H 0.41 5.81 7.45 -40.82 -0.30 5.50 16 31 H 0.40 2.78 8.49 -40.82 -0.35 2.44 16 32 H 0.10 0.99 7.99 -51.93 -0.42 0.58 16 33 H 0.10 0.99 7.99 -51.93 -0.41 0.58 16 34 H 0.10 0.53 7.75 -51.92 -0.40 0.13 16 35 H 0.10 0.53 7.75 -51.92 -0.40 0.13 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.12 0.48 8.06 -52.49 -0.42 0.05 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.12 0.71 5.88 -52.49 -0.31 0.40 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -32.15 371.72 -12.75 -44.90 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -4.95 Total: 14.65 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -3.09 Total: 4.56 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.03 Total: -52.58 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.08 Total: -14.62 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: -12.19 SS G_CDS: -5.34 Total: -17.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.15 -12.75 -44.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795162407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.501 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds