Wall clock time and date at job start Tue Mar 31 2020 22:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86796 * 120.00239 * 2 1 4 4 H 1.48500 * 109.47286 * 269.99958 * 3 2 1 5 5 H 1.48503 * 109.47072 * 29.99992 * 3 2 1 6 6 H 1.48500 * 109.46911 * 149.99673 * 3 2 1 7 7 C 1.38947 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00251 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00257 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00076 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00090 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99825 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47174 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99989 * 180.02562 * 13 12 10 15 15 S 1.71200 * 120.00392 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99899 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00108 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47046 * 180.02562 * 17 16 14 19 19 S 1.81394 * 109.46998 * 180.02562 * 18 17 16 20 20 C 1.76199 * 103.00056 * 180.02562 * 19 18 17 21 21 C 1.38975 * 120.07816 * 180.02562 * 20 19 18 22 22 C 1.38086 * 119.91892 * 179.97438 * 21 20 19 23 23 C 1.38310 * 120.07752 * 359.97438 * 22 21 20 24 24 C 1.38301 * 120.16067 * 0.02562 * 23 22 21 25 25 C 1.38081 * 120.08205 * 359.97438 * 24 23 22 26 26 H 0.97006 * 119.99934 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99990 * 359.97438 * 9 7 2 28 28 H 1.09011 * 109.47301 * 59.99801 * 12 10 9 29 29 H 1.09000 * 109.47724 * 299.99730 * 12 10 9 30 30 H 0.96995 * 119.99731 * 0.02562 * 13 12 10 31 31 H 0.97005 * 119.99945 * 359.97438 * 16 14 13 32 32 H 1.08998 * 109.46640 * 60.00225 * 17 16 14 33 33 H 1.08996 * 109.47280 * 300.00397 * 17 16 14 34 34 H 1.09000 * 109.46939 * 60.00137 * 18 17 16 35 35 H 1.09004 * 109.47160 * 299.99981 * 18 17 16 36 36 H 1.07995 * 120.04427 * 359.69664 * 21 20 19 37 37 H 1.08000 * 119.96089 * 179.97438 * 22 21 20 38 38 H 1.07995 * 119.91521 * 179.97438 * 23 22 21 39 39 H 1.07996 * 119.95950 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.04201 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2436 -4.8629 0.0022 13 7 2.1955 -5.9765 0.0027 14 6 1.7461 -7.2471 0.0027 15 16 0.0630 -7.5600 0.0028 16 7 2.6219 -8.2716 0.0037 17 6 2.1336 -9.6528 0.0043 18 6 3.3236 -10.6145 0.0060 19 16 2.7189 -12.3247 0.0060 20 6 4.2053 -13.2708 0.0088 21 6 4.1472 -14.6593 0.0090 22 6 5.3142 -15.3975 0.0106 23 6 6.5399 -14.7565 0.0117 24 6 6.6015 -13.3749 0.0115 25 6 5.4386 -12.6302 0.0099 26 1 -0.4850 0.8401 -0.0004 27 1 0.3532 -2.3906 0.0005 28 1 0.6172 -4.9212 -0.8881 29 1 0.6166 -4.9201 0.8919 30 1 3.1491 -5.7993 0.0030 31 1 3.5757 -8.0944 0.0040 32 1 1.5284 -9.8246 -0.8859 33 1 1.5276 -9.8236 0.8941 34 1 3.9283 -10.4426 0.8964 35 1 3.9299 -10.4439 -0.8836 36 1 3.1906 -15.1604 0.0123 37 1 5.2699 -16.4765 0.0112 38 1 7.4509 -15.3364 0.0134 39 1 7.5602 -12.8778 0.0127 40 1 5.4875 -11.5514 0.0102 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795162407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:47 Heat of formation + Delta-G solvation = -17.207730 kcal Electronic energy + Delta-G solvation = -22215.685485 eV Core-core repulsion = 18667.702164 eV Total energy + Delta-G solvation = -3547.983321 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78816 -39.83154 -39.60824 -36.86357 -35.95811 -33.43356 -32.67071 -31.91660 -31.69794 -29.18978 -26.55972 -24.80433 -24.69749 -23.63985 -23.14686 -21.57774 -20.22674 -19.72716 -18.74335 -18.30953 -17.43392 -17.24925 -17.04004 -16.71470 -16.41443 -16.26915 -16.11003 -15.95746 -15.53122 -15.26210 -14.97523 -14.44701 -14.23151 -14.16865 -14.11153 -13.60616 -13.56174 -13.32667 -12.94969 -12.47248 -12.42212 -12.39047 -12.30720 -12.13172 -12.07096 -11.59001 -11.24163 -10.74441 -10.66334 -10.23164 -10.11397 -9.95782 -9.13789 -8.75752 -8.52431 -8.43974 -6.03406 0.19333 0.22900 0.30230 0.39838 0.84003 1.29060 1.35263 1.41839 1.48550 1.56820 1.86211 2.26465 2.53492 2.75297 3.03502 3.14718 3.39735 3.72151 3.90145 3.98656 4.09612 4.20595 4.25695 4.36472 4.40232 4.49129 4.55469 4.55639 4.62168 4.74685 4.78435 5.04843 5.27972 5.31227 5.36688 5.44098 5.55961 5.73913 5.90057 5.96528 6.27028 6.43634 7.00669 7.40002 7.89124 8.63854 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.001617 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.921327 B =17311.929065 C =18337.101308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.008 4.008 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.088 0.912 9 N -0.553 5.553 10 C 0.430 3.570 11 O -0.627 6.627 12 C 0.133 3.867 13 N -0.651 5.651 14 C 0.585 3.415 15 S -0.721 6.721 16 N -0.663 5.663 17 C 0.150 3.850 18 C -0.119 4.119 19 S -0.107 6.107 20 C -0.100 4.100 21 C -0.117 4.117 22 C -0.106 4.106 23 C -0.131 4.131 24 C -0.109 4.109 25 C -0.146 4.146 26 H 0.281 0.719 27 H 0.400 0.600 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.416 0.584 31 H 0.417 0.583 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.261 -27.803 0.019 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.106 0.894 9 N -0.188 5.188 10 C 0.216 3.784 11 O -0.516 6.516 12 C 0.005 3.995 13 N -0.281 5.281 14 C 0.220 3.780 15 S -0.598 6.598 16 N -0.296 5.296 17 C 0.025 3.975 18 C -0.268 4.268 19 S 0.136 5.864 20 C -0.213 4.213 21 C -0.141 4.141 22 C -0.126 4.126 23 C -0.151 4.151 24 C -0.128 4.128 25 C -0.170 4.170 26 H 0.090 0.910 27 H 0.235 0.765 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.257 0.743 31 H 0.257 0.743 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.483 -28.090 0.023 29.982 hybrid contribution 2.452 1.649 -0.006 2.955 sum 12.935 -26.442 0.017 29.436 Atomic orbital electron populations 1.69682 1.07023 1.29749 1.48698 1.26127 0.96498 1.02694 0.95597 0.84869 0.77916 0.76508 0.78703 1.19568 1.19718 1.19420 1.19741 0.93006 0.83439 1.50715 0.89406 1.41803 1.09729 1.04525 1.62697 1.20311 0.88028 0.85864 0.84154 1.90476 1.15022 1.87506 1.58618 1.21061 0.90404 0.81825 1.06228 1.44466 1.11857 1.02568 1.69208 1.21525 0.94138 0.82008 0.80316 1.93674 0.96474 1.92119 1.77500 1.44663 1.08889 1.04705 1.71310 1.21163 0.95027 0.76016 1.05289 1.23762 1.01141 0.93782 1.08082 1.85803 1.08463 0.99477 1.92616 1.21906 0.96399 0.97379 1.05633 1.21003 0.99928 0.91601 1.01528 1.21431 0.91753 1.01145 0.98221 1.21575 0.98797 0.94863 0.99846 1.21414 0.98518 0.94624 0.98251 1.21431 0.91711 1.00671 1.03175 0.90981 0.76539 0.87213 0.87209 0.74292 0.74294 0.89466 0.89471 0.86922 0.86927 0.85052 0.83377 0.83563 0.83796 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.54 13.05 21.66 0.28 -47.26 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 3 Si 1.00 40.74 29.55 68.60 2.03 42.77 16 4 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.34 -18.15 9.68 84.04 0.81 -17.34 16 8 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.55 -26.72 5.29 -307.00 -1.62 -28.34 16 10 C 0.43 18.62 7.85 87.65 0.69 19.30 16 11 O -0.63 -30.27 15.24 -3.04 -0.05 -30.31 16 12 C 0.13 4.48 5.61 85.63 0.48 4.96 16 13 N -0.65 -18.29 5.53 -353.90 -1.96 -20.25 16 14 C 0.59 15.54 7.98 179.05 1.43 16.97 16 15 S -0.72 -25.54 27.77 -56.49 -1.57 -27.11 16 16 N -0.66 -11.45 5.56 -350.16 -1.95 -13.40 16 17 C 0.15 2.45 5.14 86.38 0.44 2.89 16 18 C -0.12 -1.30 4.45 71.98 0.32 -0.98 16 19 S -0.11 -1.65 21.92 -56.49 -1.24 -2.89 16 20 C -0.10 -1.51 6.11 22.62 0.14 -1.38 16 21 C -0.12 -1.63 9.79 22.41 0.22 -1.41 16 22 C -0.11 -1.13 10.04 22.25 0.22 -0.91 16 23 C -0.13 -1.27 10.04 22.30 0.22 -1.05 16 24 C -0.11 -1.15 10.04 22.25 0.22 -0.93 16 25 C -0.15 -1.85 9.36 22.41 0.21 -1.64 16 26 H 0.28 13.71 8.31 -92.70 -0.77 12.94 16 27 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 28 H 0.11 3.66 7.99 -2.38 -0.02 3.64 16 29 H 0.11 3.66 7.99 -2.39 -0.02 3.64 16 30 H 0.42 10.98 7.45 -92.71 -0.69 10.29 16 31 H 0.42 4.49 8.49 -92.70 -0.79 3.70 16 32 H 0.09 1.71 7.99 -2.39 -0.02 1.69 16 33 H 0.09 1.71 7.99 -2.39 -0.02 1.69 16 34 H 0.11 0.92 7.75 -2.39 -0.02 0.90 16 35 H 0.11 0.92 7.75 -2.39 -0.02 0.90 16 36 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 38 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.14 1.24 5.88 -2.91 -0.02 1.22 16 Total: -1.00 -69.60 371.72 -1.30 -70.89 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: -1.10 Total: 37.32 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 5.88 Total: 18.57 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -5.24 Total: -109.25 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.05 Total: -30.31 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: -27.19 SS G_CDS: -2.81 Total: -30.00 kcal Total: -69.60 -1.30 -70.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795162407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.686 kcal (2) G-P(sol) polarization free energy of solvation -69.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds