Wall clock time and date at job start Tue Mar 31 2020 22:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 119.99949 * 2 1 4 4 H 1.48497 * 109.47321 * 269.99620 * 3 2 1 5 5 H 1.48501 * 109.47433 * 30.00363 * 3 2 1 6 6 H 1.48506 * 109.47076 * 149.99948 * 3 2 1 7 7 C 1.38704 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99688 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.35508 * 116.99799 * 174.89061 * 9 7 2 11 11 C 1.38833 * 120.16691 * 6.02708 * 10 9 7 12 12 C 1.38024 * 120.07524 * 180.27612 * 11 10 9 13 13 C 1.38582 * 120.41458 * 359.71660 * 12 11 10 14 14 C 1.37800 * 120.33667 * 359.97438 * 13 12 11 15 15 C 1.39736 * 119.90895 * 0.02562 * 14 13 12 16 16 C 1.47393 * 120.20095 * 180.02562 * 15 14 13 17 17 O 1.21530 * 119.99711 * 180.02562 * 16 15 14 18 18 O 1.34756 * 119.99828 * 0.02562 * 16 15 14 19 19 C 1.35965 * 116.99803 * 185.35482 * 18 16 15 20 20 C 1.38767 * 120.14146 * 66.88615 * 19 18 16 21 21 C 1.37891 * 120.31303 * 180.02562 * 20 19 18 22 22 C 1.39370 * 120.20367 * 0.24069 * 21 20 19 23 23 C 1.38906 * 119.04094 * 359.49260 * 22 21 20 24 24 C 1.37646 * 120.85656 * 0.52945 * 23 22 21 25 25 C 1.51144 * 106.35417 * 180.28363 * 23 22 21 26 26 C 1.51394 * 104.09127 * 359.67919 * 25 23 22 27 27 O 1.21287 * 126.43266 * 179.97438 * 26 25 23 28 28 N 1.34357 * 107.12729 * 0.45601 * 26 25 23 29 29 H 0.97005 * 119.99816 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.96279 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.79025 * 179.74803 * 12 11 10 32 32 H 1.08009 * 119.83120 * 180.02562 * 13 12 11 33 33 H 1.08001 * 120.05045 * 179.97438 * 14 13 12 34 34 H 1.08001 * 119.84537 * 0.02686 * 20 19 18 35 35 H 1.07997 * 119.89998 * 179.97438 * 21 20 19 36 36 H 1.08005 * 120.06096 * 179.74230 * 24 23 22 37 37 H 1.08999 * 110.50663 * 118.90251 * 25 23 22 38 38 H 1.09001 * 110.50974 * 241.59826 * 25 23 22 39 39 H 0.97005 * 123.88552 * 179.58038 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0001 9 8 1.3346 -2.3688 -0.0005 10 6 2.0684 -3.5028 -0.1086 11 6 3.4552 -3.4411 -0.0872 12 6 4.2008 -4.5968 -0.2032 13 6 3.5742 -5.8257 -0.3356 14 6 2.1987 -5.9074 -0.3525 15 6 1.4303 -4.7461 -0.2361 16 6 -0.0414 -4.8260 -0.2529 17 8 -0.7061 -3.8136 -0.1518 18 8 -0.6498 -6.0217 -0.3801 19 6 -2.0040 -6.0153 -0.5009 20 6 -2.6003 -5.4750 -1.6315 21 6 -3.9734 -5.4663 -1.7574 22 6 -4.7735 -5.9961 -0.7468 23 6 -4.1669 -6.5398 0.3784 24 6 -2.7964 -6.5492 0.5065 25 6 -5.2849 -7.0282 1.2705 26 6 -6.5448 -6.6804 0.5066 27 8 -7.6846 -6.8967 0.8604 28 7 -6.1629 -6.0967 -0.6417 29 1 -0.4850 0.8401 0.0004 30 1 3.9511 -2.4873 0.0162 31 1 5.2794 -4.5430 -0.1900 32 1 4.1669 -6.7242 -0.4252 33 1 1.7151 -6.8675 -0.4564 34 1 -1.9859 -5.0594 -2.4165 35 1 -4.4304 -5.0437 -2.6400 36 1 -2.3384 -6.9715 1.3887 37 1 -5.2070 -8.1043 1.4259 38 1 -5.2697 -6.5017 2.2248 39 1 -6.7808 -5.7812 -1.3197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797346403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:39 Heat of formation + Delta-G solvation = -64.848968 kcal Electronic energy + Delta-G solvation = -27762.561633 eV Core-core repulsion = 23602.022859 eV Total energy + Delta-G solvation = -4160.538774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62836 -40.51701 -39.15482 -38.15031 -36.56491 -36.28523 -34.98153 -32.50065 -32.48641 -30.88849 -29.25526 -29.04861 -27.99212 -25.59910 -24.28132 -22.66551 -22.24966 -21.44777 -21.34467 -20.24995 -18.18081 -18.12475 -17.80334 -17.34656 -16.80200 -16.30321 -16.16574 -15.76901 -14.84185 -14.66172 -14.56351 -14.34029 -14.12402 -14.07932 -13.84558 -13.49801 -13.31294 -13.23909 -13.22897 -12.76146 -12.70222 -12.38713 -11.83603 -11.68071 -11.40038 -11.25121 -11.00466 -10.97203 -10.79947 -10.55161 -10.53014 -10.31193 -9.91043 -9.43184 -9.01932 -9.00984 -8.43348 -8.00302 -7.48096 -6.59535 -4.19351 0.89927 1.17900 1.47704 2.20653 2.21625 2.78745 3.03952 3.05061 3.07996 3.09873 3.26641 3.74748 3.81897 3.97863 4.22466 4.44429 4.64231 4.91773 4.97352 5.03775 5.05739 5.14861 5.24594 5.25821 5.48050 5.53631 5.68848 5.75162 5.86756 5.92510 6.02212 6.09645 6.32393 6.34077 6.48182 6.54917 6.56653 6.69240 6.81934 6.96920 7.10492 7.13887 7.19532 7.55872 7.73396 7.78536 8.58520 8.80384 9.47663 10.53706 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003067 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.389176 B = 9127.333030 C =10953.271373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.403 4.403 8 H 0.097 0.903 9 O -0.124 6.124 10 C 0.191 3.809 11 C -0.237 4.237 12 C -0.042 4.042 13 C -0.234 4.234 14 C -0.015 4.015 15 C -0.217 4.217 16 C 0.494 3.506 17 O -0.457 6.457 18 O -0.301 6.301 19 C 0.089 3.911 20 C -0.087 4.087 21 C -0.116 4.116 22 C 0.129 3.871 23 C -0.130 4.130 24 C -0.069 4.069 25 C -0.112 4.112 26 C 0.530 3.470 27 O -0.511 6.511 28 N -0.657 5.657 29 H 0.274 0.726 30 H 0.135 0.865 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -12.199 -1.986 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.478 4.478 8 H 0.115 0.885 9 O -0.021 6.021 10 C 0.131 3.869 11 C -0.256 4.256 12 C -0.060 4.060 13 C -0.253 4.253 14 C -0.033 4.033 15 C -0.220 4.220 16 C 0.340 3.660 17 O -0.340 6.340 18 O -0.219 6.219 19 C 0.046 3.954 20 C -0.106 4.106 21 C -0.137 4.137 22 C 0.033 3.967 23 C -0.133 4.133 24 C -0.088 4.088 25 C -0.151 4.151 26 C 0.318 3.682 27 O -0.386 6.386 28 N -0.300 5.300 29 H 0.084 0.916 30 H 0.153 0.847 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -3.871 -11.763 -1.588 12.485 hybrid contribution 0.268 1.116 -0.449 1.232 sum -3.603 -10.647 -2.037 11.423 Atomic orbital electron populations 1.70116 1.06054 1.28080 1.41758 1.25430 0.95853 0.99104 0.95913 0.85686 0.79033 0.79660 0.78937 1.19607 1.20027 1.18923 1.21547 0.92048 0.80810 1.53400 0.88544 1.84130 1.33951 1.11240 1.72821 1.19203 0.90044 0.86891 0.90747 1.21117 0.92938 0.99575 1.12001 1.20989 0.98875 0.92265 0.93894 1.20550 0.94077 0.97303 1.13326 1.20976 0.93623 0.96165 0.92560 1.17888 0.87507 0.92717 1.23866 1.21508 0.89207 0.80421 0.74903 1.91049 1.65456 1.34250 1.43245 1.84682 1.17495 1.35320 1.84366 1.18262 0.82029 1.01098 0.93990 1.21125 0.94255 0.97511 0.97754 1.20158 0.92232 1.02782 0.98530 1.18113 0.82543 0.99593 0.96482 1.19470 0.93312 1.04294 0.96240 1.20086 0.90684 1.00205 0.97847 1.21040 0.89719 1.04574 0.99758 1.20592 0.90320 0.76094 0.81169 1.90813 1.21815 1.54486 1.71465 1.43725 1.05958 1.58617 1.21743 0.91627 0.84746 0.86863 0.86852 0.85636 0.84484 0.84953 0.84353 0.85671 0.85753 0.74906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.91 13.67 55.48 0.76 -23.15 16 2 C 0.05 1.21 5.49 -17.51 -0.10 1.11 16 3 Si 0.94 19.57 29.55 -169.99 -5.02 14.55 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.40 -10.81 9.49 30.90 0.29 -10.51 16 8 H 0.10 2.33 5.21 -52.49 -0.27 2.05 16 9 O -0.12 -3.45 7.84 -21.02 -0.16 -3.62 16 10 C 0.19 4.49 6.66 -38.58 -0.26 4.23 16 11 C -0.24 -4.77 9.16 -39.44 -0.36 -5.13 16 12 C -0.04 -0.68 10.03 -39.53 -0.40 -1.08 16 13 C -0.23 -3.63 10.02 -39.61 -0.40 -4.03 16 14 C -0.01 -0.25 9.61 -39.18 -0.38 -0.63 16 15 C -0.22 -4.55 5.89 -104.83 -0.62 -5.17 16 16 C 0.49 10.58 7.65 34.46 0.26 10.84 16 17 O -0.46 -11.71 14.54 -26.61 -0.39 -12.10 16 18 O -0.30 -5.29 9.30 -25.04 -0.23 -5.52 16 19 C 0.09 1.41 5.35 -39.16 -0.21 1.20 16 20 C -0.09 -1.29 9.18 -39.51 -0.36 -1.65 16 21 C -0.12 -1.42 10.07 -39.29 -0.40 -1.82 16 22 C 0.13 1.53 7.11 -83.61 -0.59 0.94 16 23 C -0.13 -1.54 6.34 -104.37 -0.66 -2.21 16 24 C -0.07 -0.92 9.98 -39.57 -0.39 -1.31 16 25 C -0.11 -1.07 6.88 -28.48 -0.20 -1.26 16 26 C 0.53 6.19 8.71 -10.83 -0.09 6.10 16 27 O -0.51 -7.51 18.03 5.55 0.10 -7.41 16 28 N -0.66 -6.88 5.89 -9.66 -0.06 -6.93 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 30 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 33 H 0.13 1.78 7.61 -52.49 -0.40 1.38 16 34 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.41 3.41 8.96 -40.82 -0.37 3.04 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -33.96 350.07 -8.01 -41.97 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -3.43 Total: 7.31 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -4.85 Total: -10.37 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.70 Total: -30.08 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.68 Total: -28.65 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.96 -8.01 -41.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797346403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.879 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds