Wall clock time and date at job start Tue Mar 31 2020 22:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 119.99949 * 2 1 4 4 H 1.48497 * 109.47321 * 269.99620 * 3 2 1 5 5 H 1.48501 * 109.47433 * 30.00363 * 3 2 1 6 6 H 1.48506 * 109.47076 * 149.99948 * 3 2 1 7 7 C 1.38704 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99688 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.35508 * 116.99799 * 174.89061 * 9 7 2 11 11 C 1.38833 * 120.16691 * 6.02708 * 10 9 7 12 12 C 1.38024 * 120.07524 * 180.27612 * 11 10 9 13 13 C 1.38582 * 120.41458 * 359.71660 * 12 11 10 14 14 C 1.37800 * 120.33667 * 359.97438 * 13 12 11 15 15 C 1.39736 * 119.90895 * 0.02562 * 14 13 12 16 16 C 1.47393 * 120.20095 * 180.02562 * 15 14 13 17 17 O 1.21530 * 119.99711 * 180.02562 * 16 15 14 18 18 O 1.34756 * 119.99828 * 0.02562 * 16 15 14 19 19 C 1.35965 * 116.99803 * 185.35482 * 18 16 15 20 20 C 1.38767 * 120.14146 * 66.88615 * 19 18 16 21 21 C 1.37891 * 120.31303 * 180.02562 * 20 19 18 22 22 C 1.39370 * 120.20367 * 0.24069 * 21 20 19 23 23 C 1.38906 * 119.04094 * 359.49260 * 22 21 20 24 24 C 1.37646 * 120.85656 * 0.52945 * 23 22 21 25 25 C 1.51144 * 106.35417 * 180.28363 * 23 22 21 26 26 C 1.51394 * 104.09127 * 359.67919 * 25 23 22 27 27 O 1.21287 * 126.43266 * 179.97438 * 26 25 23 28 28 N 1.34357 * 107.12729 * 0.45601 * 26 25 23 29 29 H 0.97005 * 119.99816 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.96279 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.79025 * 179.74803 * 12 11 10 32 32 H 1.08009 * 119.83120 * 180.02562 * 13 12 11 33 33 H 1.08001 * 120.05045 * 179.97438 * 14 13 12 34 34 H 1.08001 * 119.84537 * 0.02686 * 20 19 18 35 35 H 1.07997 * 119.89998 * 179.97438 * 21 20 19 36 36 H 1.08005 * 120.06096 * 179.74230 * 24 23 22 37 37 H 1.08999 * 110.50663 * 118.90251 * 25 23 22 38 38 H 1.09001 * 110.50974 * 241.59826 * 25 23 22 39 39 H 0.97005 * 123.88552 * 179.58038 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0001 9 8 1.3346 -2.3688 -0.0005 10 6 2.0684 -3.5028 -0.1086 11 6 3.4552 -3.4411 -0.0872 12 6 4.2008 -4.5968 -0.2032 13 6 3.5742 -5.8257 -0.3356 14 6 2.1987 -5.9074 -0.3525 15 6 1.4303 -4.7461 -0.2361 16 6 -0.0414 -4.8260 -0.2529 17 8 -0.7061 -3.8136 -0.1518 18 8 -0.6498 -6.0217 -0.3801 19 6 -2.0040 -6.0153 -0.5009 20 6 -2.6003 -5.4750 -1.6315 21 6 -3.9734 -5.4663 -1.7574 22 6 -4.7735 -5.9961 -0.7468 23 6 -4.1669 -6.5398 0.3784 24 6 -2.7964 -6.5492 0.5065 25 6 -5.2849 -7.0282 1.2705 26 6 -6.5448 -6.6804 0.5066 27 8 -7.6846 -6.8967 0.8604 28 7 -6.1629 -6.0967 -0.6417 29 1 -0.4850 0.8401 0.0004 30 1 3.9511 -2.4873 0.0162 31 1 5.2794 -4.5430 -0.1900 32 1 4.1669 -6.7242 -0.4252 33 1 1.7151 -6.8675 -0.4564 34 1 -1.9859 -5.0594 -2.4165 35 1 -4.4304 -5.0437 -2.6400 36 1 -2.3384 -6.9715 1.3887 37 1 -5.2070 -8.1043 1.4259 38 1 -5.2697 -6.5017 2.2248 39 1 -6.7808 -5.7812 -1.3197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797346403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:38 Heat of formation + Delta-G solvation = -86.187023 kcal Electronic energy + Delta-G solvation = -27763.486920 eV Core-core repulsion = 23602.022859 eV Total energy + Delta-G solvation = -4161.464061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.67796 -41.92697 -40.71943 -39.32717 -38.15430 -37.81349 -36.14691 -34.36711 -33.44929 -32.39393 -30.64331 -30.28034 -29.01773 -27.46119 -25.73804 -23.85686 -23.52686 -22.87099 -22.28388 -21.63696 -19.91732 -19.38166 -19.09232 -18.83186 -17.91537 -17.84897 -17.13503 -17.06318 -16.44517 -16.21160 -15.94358 -15.70119 -15.47671 -15.38367 -15.11698 -15.01284 -14.64079 -14.34199 -14.27652 -14.25979 -13.78875 -13.57286 -13.48148 -13.10139 -12.85554 -12.72640 -12.55026 -12.40211 -12.13307 -11.96539 -11.68750 -11.59865 -11.39724 -11.10658 -10.85096 -10.04477 -9.92656 -9.12361 -9.07048 -8.48299 -6.18992 -0.23585 -0.03740 0.14574 0.69992 1.20837 1.34192 1.44892 1.52455 1.68411 1.76114 1.89687 2.14148 2.64201 2.82343 3.02281 3.14834 3.27959 3.37197 3.65401 3.84943 3.99578 4.08123 4.16124 4.24216 4.28990 4.45062 4.51448 4.54263 4.70221 4.73115 4.87106 4.92602 5.00435 5.06484 5.13371 5.23351 5.23865 5.47160 5.53202 5.60037 5.65505 5.67949 5.85117 5.93388 6.12855 6.83252 6.90906 7.01027 7.70876 8.71293 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003067 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.389176 B = 9127.333030 C =10953.271373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.018 4.018 3 Si 1.020 2.980 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.426 4.426 8 H 0.112 0.888 9 O -0.186 6.186 10 C 0.159 3.841 11 C -0.256 4.256 12 C -0.026 4.026 13 C -0.203 4.203 14 C -0.011 4.011 15 C -0.234 4.234 16 C 0.496 3.504 17 O -0.510 6.510 18 O -0.286 6.286 19 C 0.048 3.952 20 C -0.104 4.104 21 C -0.114 4.114 22 C 0.133 3.867 23 C -0.128 4.128 24 C -0.067 4.067 25 C -0.104 4.104 26 C 0.529 3.471 27 O -0.542 6.542 28 N -0.648 5.648 29 H 0.272 0.728 30 H 0.131 0.869 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.125 0.875 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.141 0.859 39 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.448 -15.103 -1.831 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.218 4.218 3 Si 0.839 3.161 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.501 4.501 8 H 0.129 0.871 9 O -0.088 6.088 10 C 0.104 3.896 11 C -0.275 4.275 12 C -0.044 4.044 13 C -0.222 4.222 14 C -0.029 4.029 15 C -0.237 4.237 16 C 0.344 3.656 17 O -0.397 6.397 18 O -0.202 6.202 19 C 0.005 3.995 20 C -0.123 4.123 21 C -0.135 4.135 22 C 0.036 3.964 23 C -0.131 4.131 24 C -0.085 4.085 25 C -0.142 4.142 26 C 0.319 3.681 27 O -0.419 6.419 28 N -0.291 5.291 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.177 0.823 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.143 0.857 35 H 0.175 0.825 36 H 0.176 0.824 37 H 0.174 0.826 38 H 0.159 0.841 39 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -1.746 -14.754 -1.456 14.929 hybrid contribution -0.313 1.510 -0.558 1.640 sum -2.060 -13.244 -2.014 13.554 Atomic orbital electron populations 1.70298 1.08322 1.28759 1.46264 1.26731 0.96713 1.03038 0.95311 0.84573 0.78004 0.74187 0.79338 1.18709 1.19921 1.16941 1.22068 0.92888 0.81385 1.53805 0.87111 1.84138 1.35453 1.12324 1.76877 1.19953 0.91826 0.86882 0.90975 1.21294 0.91789 1.01295 1.13134 1.21541 1.01052 0.91029 0.90750 1.21226 0.93626 0.98778 1.08520 1.21422 0.94450 0.95847 0.91207 1.18361 0.87885 0.93504 1.23949 1.21782 0.89652 0.80737 0.73398 1.91030 1.66685 1.36375 1.45626 1.84653 1.18899 1.32923 1.83724 1.18648 0.81350 1.03788 0.95675 1.21173 0.95414 0.98118 0.97629 1.20333 0.91291 1.02264 0.99609 1.18206 0.83137 0.98765 0.96323 1.19706 0.93243 1.03480 0.96667 1.20236 0.91124 0.99540 0.97642 1.21143 0.87088 1.06573 0.99401 1.20883 0.90431 0.75502 0.81284 1.90808 1.23140 1.55850 1.72120 1.43699 1.05492 1.57982 1.21946 0.91911 0.85150 0.82251 0.81657 0.82374 0.85664 0.82507 0.82433 0.82607 0.84102 0.73705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.33 13.67 21.62 0.30 -56.04 16 2 C -0.02 -1.01 5.49 84.85 0.47 -0.55 16 3 Si 1.02 42.05 29.55 68.60 2.03 44.08 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.43 -24.37 9.49 67.93 0.64 -23.73 16 8 H 0.11 5.62 5.21 -2.91 -0.02 5.60 16 9 O -0.19 -11.18 7.84 0.99 0.01 -11.17 16 10 C 0.16 7.75 6.66 22.92 0.15 7.90 16 11 C -0.26 -10.15 9.16 22.36 0.20 -9.94 16 12 C -0.03 -0.74 10.03 22.30 0.22 -0.51 16 13 C -0.20 -5.18 10.02 22.25 0.22 -4.96 16 14 C -0.01 -0.35 9.61 22.53 0.22 -0.13 16 15 C -0.23 -9.94 5.89 -20.00 -0.12 -10.06 16 16 C 0.50 22.25 7.65 70.23 0.54 22.78 16 17 O -0.51 -28.23 14.54 26.73 0.39 -27.84 16 18 O -0.29 -10.18 9.30 -0.84 -0.01 -10.19 16 19 C 0.05 1.54 5.35 22.54 0.12 1.66 16 20 C -0.10 -3.20 9.18 22.31 0.20 -2.99 16 21 C -0.11 -2.78 10.07 22.46 0.23 -2.56 16 22 C 0.13 3.00 7.11 38.32 0.27 3.28 16 23 C -0.13 -2.83 6.34 -19.70 -0.12 -2.95 16 24 C -0.07 -1.71 9.98 22.27 0.22 -1.49 16 25 C -0.10 -1.70 6.88 29.46 0.20 -1.50 16 26 C 0.53 11.41 8.71 87.94 0.77 12.18 16 27 O -0.54 -15.22 18.03 -3.05 -0.06 -15.28 16 28 N -0.65 -12.56 5.89 -303.10 -1.78 -14.34 16 29 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 30 H 0.13 5.17 5.64 -2.91 -0.02 5.15 16 31 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.16 3.81 7.61 -2.91 -0.02 3.79 16 34 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 36 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 37 H 0.16 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.42 6.39 8.96 -92.70 -0.83 5.56 16 Total: -1.00 -83.77 350.07 5.62 -78.15 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.31 Total: 26.19 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 4.44 Total: -13.57 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -1.49 Total: -70.38 kcal Atomic # 8 Polarization: -64.81 SS G_CDS: 0.33 Total: -64.47 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -83.77 5.62 -78.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797346403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.037 kcal (2) G-P(sol) polarization free energy of solvation -83.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds