Wall clock time and date at job start Tue Mar 31 2020 22:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86799 * 119.99825 * 2 1 4 4 H 1.48501 * 109.46855 * 269.99401 * 3 2 1 5 5 H 1.48501 * 109.47048 * 29.99194 * 3 2 1 6 6 H 1.48497 * 109.47255 * 149.99672 * 3 2 1 7 7 C 1.38796 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99841 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00138 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47213 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46889 * 179.97438 * 11 10 9 13 13 O 1.45204 * 109.46771 * 180.02562 * 12 11 10 14 14 C 1.34752 * 116.99850 * 180.02562 * 13 12 11 15 15 O 1.21498 * 120.00185 * 359.97438 * 14 13 12 16 16 C 1.47473 * 119.99783 * 180.02562 * 14 13 12 17 17 C 1.39794 * 120.08904 * 180.02562 * 16 14 13 18 18 C 1.37679 * 119.90398 * 180.29757 * 17 16 14 19 19 C 1.39021 * 120.09068 * 359.43972 * 18 17 16 20 20 O 1.35694 * 119.90499 * 180.28089 * 19 18 17 21 21 C 1.42899 * 117.00093 * 0.27444 * 20 19 18 22 22 C 1.50701 * 109.47130 * 179.97438 * 21 20 19 23 23 N 1.34781 * 119.99844 * 179.97438 * 22 21 20 24 24 O 1.21277 * 120.00219 * 0.02562 * 22 21 20 25 25 C 1.39012 * 120.18607 * 0.55640 * 19 18 17 26 26 C 1.37681 * 120.09185 * 359.72844 * 25 19 18 27 27 H 0.96996 * 119.99891 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47036 * 59.99910 * 10 9 7 29 29 H 1.08993 * 109.47209 * 299.99762 * 10 9 7 30 30 H 1.09000 * 109.46726 * 60.00293 * 11 10 9 31 31 H 1.08993 * 109.47306 * 300.00275 * 11 10 9 32 32 H 1.09000 * 109.47020 * 60.00690 * 12 11 10 33 33 H 1.09001 * 109.47393 * 300.00070 * 12 11 10 34 34 H 1.08002 * 120.04587 * 0.02562 * 17 16 14 35 35 H 1.07998 * 119.95594 * 179.72119 * 18 17 16 36 36 H 1.09000 * 109.47555 * 299.99716 * 21 20 19 37 37 H 1.09000 * 109.46918 * 60.00321 * 21 20 19 38 38 H 0.96996 * 120.00229 * 0.02562 * 23 22 21 39 39 H 0.97005 * 119.99743 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.95324 * 179.69751 * 25 19 18 41 41 H 1.08005 * 120.04549 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9794 -5.3243 0.0012 12 6 3.1515 -6.3076 0.0005 13 8 2.6424 -7.6675 0.0005 14 6 3.5523 -8.6614 0.0005 15 8 4.7386 -8.3990 0.0001 16 6 3.1081 -10.0676 0.0000 17 6 4.0504 -11.1003 0.0005 18 6 3.6315 -12.4118 -0.0062 19 6 2.2736 -12.7098 -0.0018 20 8 1.8650 -14.0037 -0.0027 21 6 2.8837 -15.0058 -0.0022 22 6 2.2455 -16.3710 -0.0027 23 7 3.0175 -17.4758 -0.0029 24 8 1.0372 -16.4756 -0.0039 25 6 1.3333 -11.6859 -0.0022 26 6 1.7437 -10.3717 -0.0014 27 1 -0.4850 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1245 -3.7313 -0.8894 30 1 1.3706 -5.4846 -0.8886 31 1 1.3711 -5.4840 0.8913 32 1 3.7607 -6.1474 0.8901 33 1 3.7596 -6.1477 -0.8899 34 1 5.1055 -10.8695 0.0018 35 1 4.3588 -13.2102 -0.0104 36 1 3.5039 -14.8940 -0.8916 37 1 3.5022 -14.8947 0.8884 38 1 3.9838 -17.3922 -0.0023 39 1 2.6067 -18.3545 -0.0036 40 1 0.2794 -11.9217 -0.0037 41 1 1.0125 -9.5768 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805354397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:56 Heat of formation + Delta-G solvation = -147.351014 kcal Electronic energy + Delta-G solvation = -24395.810911 eV Core-core repulsion = 20367.138532 eV Total energy + Delta-G solvation = -4028.672380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.11728 -40.42328 -39.57233 -37.70596 -36.55862 -34.43691 -33.51261 -32.43945 -31.70312 -31.10791 -28.98059 -26.68847 -25.49603 -24.00280 -23.42444 -21.47612 -21.35879 -20.98911 -19.06452 -18.50125 -17.87243 -17.37943 -17.19560 -17.05063 -16.80187 -16.57506 -16.02418 -15.09018 -14.94530 -14.81646 -14.63179 -14.57668 -14.40814 -13.95645 -13.77377 -13.25163 -13.19585 -12.91261 -12.69850 -12.63014 -12.10166 -11.68719 -11.47176 -11.30724 -11.13611 -10.98537 -10.91288 -10.71208 -10.64500 -10.58053 -10.44313 -10.27947 -9.63336 -9.56957 -9.07244 -8.82093 -8.35236 -6.55964 -6.24403 -3.95438 0.38105 0.86420 1.86185 1.98566 2.33353 2.53954 3.13178 3.21726 3.22668 3.29239 3.38210 3.54907 3.97147 4.18276 4.20364 4.28325 4.31185 4.34295 4.56238 4.75684 4.92030 5.07775 5.11042 5.13703 5.20064 5.37223 5.48735 5.52424 5.62638 5.70914 5.78294 5.87995 5.97436 6.00832 6.12773 6.16892 6.42527 6.45635 6.49339 6.67683 6.72761 7.50279 7.59456 7.68608 8.35208 9.22035 10.83772 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.043094 B = 0.001380 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.582903 B =20280.877935 C =20899.408994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.074 3.926 13 O -0.351 6.351 14 C 0.510 3.490 15 O -0.512 6.512 16 C -0.161 4.161 17 C -0.012 4.012 18 C -0.225 4.225 19 C 0.161 3.839 20 O -0.285 6.285 21 C 0.036 3.964 22 C 0.520 3.480 23 N -0.850 5.850 24 O -0.516 6.516 25 C -0.159 4.159 26 C -0.017 4.017 27 H 0.268 0.732 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.404 0.596 39 H 0.410 0.590 40 H 0.144 0.856 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.443 -34.913 -0.004 36.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.268 6.268 14 C 0.356 3.644 15 O -0.402 6.402 16 C -0.162 4.162 17 C -0.031 4.031 18 C -0.244 4.244 19 C 0.114 3.886 20 O -0.196 6.196 21 C -0.043 4.043 22 C 0.302 3.698 23 N -0.417 5.417 24 O -0.389 6.389 25 C -0.178 4.178 26 C -0.036 4.036 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.232 0.768 39 H 0.242 0.758 40 H 0.161 0.839 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.474 -34.795 0.000 35.588 hybrid contribution 2.689 1.003 -0.006 2.870 sum 10.164 -33.791 -0.007 35.287 Atomic orbital electron populations 1.70020 1.05926 1.27410 1.47133 1.25011 0.95081 0.99096 0.94509 0.86154 0.79451 0.81473 0.78395 1.20241 1.20723 1.19660 1.22701 0.94599 0.90703 1.58692 0.90845 1.84653 1.08775 0.99213 1.96881 1.23181 1.03447 0.96352 1.03352 1.21289 0.96448 0.91547 1.04361 1.23293 0.97806 0.76301 1.02681 1.86516 1.39686 1.16923 1.83633 1.20976 0.84204 0.86417 0.72849 1.90832 1.18023 1.85044 1.46325 1.19099 0.94473 0.89989 1.12688 1.21041 1.00091 0.90594 0.91347 1.21141 0.94254 0.97727 1.11282 1.19363 0.92892 0.83301 0.93015 1.86134 1.33494 1.12168 1.87836 1.22529 0.90922 0.86338 1.04513 1.20022 0.87468 0.85992 0.76273 1.43653 1.10913 1.08605 1.78549 1.90839 1.14034 1.86939 1.47137 1.20470 0.99995 0.90208 1.07086 1.21401 0.94942 0.96233 0.90984 0.92246 0.91724 0.91721 0.90299 0.90290 0.91062 0.91067 0.84027 0.84562 0.88334 0.88343 0.76764 0.75797 0.83850 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.82 9.50 30.94 0.29 -14.52 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.12 -3.20 21.44 -107.50 -2.30 -5.50 16 10 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 11 C -0.10 -1.58 5.60 -26.73 -0.15 -1.73 16 12 C 0.07 1.07 5.48 37.16 0.20 1.27 16 13 O -0.35 -4.84 9.46 -40.63 -0.38 -5.23 16 14 C 0.51 6.83 7.89 34.49 0.27 7.10 16 15 O -0.51 -8.00 16.13 -19.26 -0.31 -8.32 16 16 C -0.16 -1.70 5.87 -104.98 -0.62 -2.32 16 17 C -0.01 -0.11 9.59 -39.20 -0.38 -0.48 16 18 C -0.23 -1.48 9.01 -39.50 -0.36 -1.84 16 19 C 0.16 1.29 6.70 -39.00 -0.26 1.03 16 20 O -0.28 -2.36 9.66 -38.69 -0.37 -2.73 16 21 C 0.04 0.14 5.21 36.01 0.19 0.33 16 22 C 0.52 3.01 8.18 -10.98 -0.09 2.92 16 23 N -0.85 -1.09 8.87 31.22 0.28 -0.81 16 24 O -0.52 -5.90 17.34 -14.35 -0.25 -6.15 16 25 C -0.16 -1.35 9.97 -39.50 -0.39 -1.74 16 26 C -0.02 -0.16 9.61 -39.21 -0.38 -0.54 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 29 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.14 1.13 7.64 -52.49 -0.40 0.73 16 35 H 0.14 0.43 6.28 -52.49 -0.33 0.10 16 36 H 0.10 0.13 7.64 -51.93 -0.40 -0.26 16 37 H 0.10 0.13 7.66 -51.93 -0.40 -0.26 16 38 H 0.40 -0.88 8.83 -40.82 -0.36 -1.24 16 39 H 0.41 0.34 8.93 -40.82 -0.36 -0.02 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.15 1.26 7.60 -52.48 -0.40 0.86 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -37.76 378.35 -8.63 -46.39 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -5.15 Total: -4.04 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -1.55 Total: -10.64 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 1.01 Total: -25.95 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -1.32 Total: -22.42 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.30 Total: -5.50 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.76 -8.63 -46.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805354397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.959 kcal (2) G-P(sol) polarization free energy of solvation -37.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds