Wall clock time and date at job start Tue Mar 31 2020 22:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86799 * 119.99825 * 2 1 4 4 H 1.48501 * 109.46855 * 269.99401 * 3 2 1 5 5 H 1.48501 * 109.47048 * 29.99194 * 3 2 1 6 6 H 1.48497 * 109.47255 * 149.99672 * 3 2 1 7 7 C 1.38796 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99841 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00138 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47213 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46889 * 179.97438 * 11 10 9 13 13 O 1.45204 * 109.46771 * 180.02562 * 12 11 10 14 14 C 1.34752 * 116.99850 * 180.02562 * 13 12 11 15 15 O 1.21498 * 120.00185 * 359.97438 * 14 13 12 16 16 C 1.47473 * 119.99783 * 180.02562 * 14 13 12 17 17 C 1.39794 * 120.08904 * 180.02562 * 16 14 13 18 18 C 1.37679 * 119.90398 * 180.29757 * 17 16 14 19 19 C 1.39021 * 120.09068 * 359.43972 * 18 17 16 20 20 O 1.35694 * 119.90499 * 180.28089 * 19 18 17 21 21 C 1.42899 * 117.00093 * 0.27444 * 20 19 18 22 22 C 1.50701 * 109.47130 * 179.97438 * 21 20 19 23 23 N 1.34781 * 119.99844 * 179.97438 * 22 21 20 24 24 O 1.21277 * 120.00219 * 0.02562 * 22 21 20 25 25 C 1.39012 * 120.18607 * 0.55640 * 19 18 17 26 26 C 1.37681 * 120.09185 * 359.72844 * 25 19 18 27 27 H 0.96996 * 119.99891 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47036 * 59.99910 * 10 9 7 29 29 H 1.08993 * 109.47209 * 299.99762 * 10 9 7 30 30 H 1.09000 * 109.46726 * 60.00293 * 11 10 9 31 31 H 1.08993 * 109.47306 * 300.00275 * 11 10 9 32 32 H 1.09000 * 109.47020 * 60.00690 * 12 11 10 33 33 H 1.09001 * 109.47393 * 300.00070 * 12 11 10 34 34 H 1.08002 * 120.04587 * 0.02562 * 17 16 14 35 35 H 1.07998 * 119.95594 * 179.72119 * 18 17 16 36 36 H 1.09000 * 109.47555 * 299.99716 * 21 20 19 37 37 H 1.09000 * 109.46918 * 60.00321 * 21 20 19 38 38 H 0.96996 * 120.00229 * 0.02562 * 23 22 21 39 39 H 0.97005 * 119.99743 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.95324 * 179.69751 * 25 19 18 41 41 H 1.08005 * 120.04549 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9794 -5.3243 0.0012 12 6 3.1515 -6.3076 0.0005 13 8 2.6424 -7.6675 0.0005 14 6 3.5523 -8.6614 0.0005 15 8 4.7386 -8.3990 0.0001 16 6 3.1081 -10.0676 0.0000 17 6 4.0504 -11.1003 0.0005 18 6 3.6315 -12.4118 -0.0062 19 6 2.2736 -12.7098 -0.0018 20 8 1.8650 -14.0037 -0.0027 21 6 2.8837 -15.0058 -0.0022 22 6 2.2455 -16.3710 -0.0027 23 7 3.0175 -17.4758 -0.0029 24 8 1.0372 -16.4756 -0.0039 25 6 1.3333 -11.6859 -0.0022 26 6 1.7437 -10.3717 -0.0014 27 1 -0.4850 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1245 -3.7313 -0.8894 30 1 1.3706 -5.4846 -0.8886 31 1 1.3711 -5.4840 0.8913 32 1 3.7607 -6.1474 0.8901 33 1 3.7596 -6.1477 -0.8899 34 1 5.1055 -10.8695 0.0018 35 1 4.3588 -13.2102 -0.0104 36 1 3.5039 -14.8940 -0.8916 37 1 3.5022 -14.8947 0.8884 38 1 3.9838 -17.3922 -0.0023 39 1 2.6067 -18.3545 -0.0036 40 1 0.2794 -11.9217 -0.0037 41 1 1.0125 -9.5768 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805354397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:55 Heat of formation + Delta-G solvation = -173.045996 kcal Electronic energy + Delta-G solvation = -24396.925129 eV Core-core repulsion = 20367.138532 eV Total energy + Delta-G solvation = -4029.786598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80292 -41.24016 -40.14438 -38.39683 -37.61583 -34.90409 -34.79554 -34.57728 -32.29852 -31.77940 -29.40787 -28.17948 -27.44123 -24.87502 -24.00444 -22.73686 -22.07479 -21.67130 -19.65065 -19.53797 -19.04603 -18.39735 -18.06576 -17.72476 -17.42370 -17.36216 -16.89455 -16.60915 -16.21011 -15.98633 -15.63822 -15.43096 -15.11674 -14.94836 -14.59172 -14.43713 -14.22046 -13.82601 -13.79661 -13.50638 -13.50213 -13.13290 -12.94532 -12.62475 -12.40670 -12.39569 -12.16217 -12.00736 -11.77723 -11.51351 -11.44060 -11.14501 -11.13972 -10.74884 -10.35613 -10.17396 -9.45402 -8.67635 -8.37753 -6.14332 -0.35457 0.26524 1.27431 1.40086 1.42949 1.44079 1.48390 1.52501 1.60994 1.85691 2.27517 2.68365 2.79622 2.96948 3.28791 3.57760 3.62111 3.81999 3.85763 3.88206 3.98896 4.06632 4.11637 4.13597 4.15711 4.30822 4.33583 4.49920 4.52297 4.68770 4.94065 4.98451 5.02391 5.08420 5.16743 5.27327 5.40071 5.41463 5.49824 5.81490 6.16060 6.18071 6.40632 6.64941 7.04822 7.25659 8.71644 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.043094 B = 0.001380 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.582903 B =20280.877935 C =20899.408994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.017 3.983 3 Si 0.993 3.007 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.074 0.926 9 S -0.185 6.185 10 C -0.092 4.092 11 C -0.086 4.086 12 C 0.082 3.918 13 O -0.353 6.353 14 C 0.510 3.490 15 O -0.540 6.540 16 C -0.185 4.185 17 C -0.013 4.013 18 C -0.211 4.211 19 C 0.165 3.835 20 O -0.309 6.309 21 C 0.027 3.973 22 C 0.515 3.485 23 N -0.826 5.826 24 O -0.585 6.585 25 C -0.171 4.171 26 C -0.019 4.019 27 H 0.272 0.728 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.179 0.821 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.424 0.576 39 H 0.414 0.586 40 H 0.148 0.852 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.829 -36.470 -0.013 38.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.188 4.188 3 Si 0.815 3.185 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.689 4.689 8 H 0.092 0.908 9 S 0.044 5.956 10 C -0.241 4.241 11 C -0.124 4.124 12 C 0.006 3.994 13 O -0.270 6.270 14 C 0.358 3.642 15 O -0.432 6.432 16 C -0.186 4.186 17 C -0.032 4.032 18 C -0.229 4.229 19 C 0.118 3.882 20 O -0.222 6.222 21 C -0.051 4.051 22 C 0.300 3.700 23 N -0.393 5.393 24 O -0.465 6.465 25 C -0.190 4.190 26 C -0.037 4.037 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.166 0.834 35 H 0.196 0.804 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.256 0.744 39 H 0.246 0.754 40 H 0.165 0.835 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.915 -36.399 -0.010 37.725 hybrid contribution 1.987 1.232 -0.004 2.338 sum 11.902 -35.167 -0.014 37.126 Atomic orbital electron populations 1.70148 1.07665 1.28614 1.47888 1.26046 0.96008 1.03048 0.93671 0.85023 0.78188 0.76405 0.78841 1.19278 1.19889 1.18745 1.23065 0.94864 0.91971 1.59033 0.90773 1.84634 1.13093 1.00815 1.97063 1.23069 1.00795 0.96524 1.03704 1.21106 0.97027 0.89795 1.04519 1.23048 0.96655 0.76601 1.03059 1.86508 1.39972 1.16685 1.83805 1.21493 0.83754 0.87138 0.71835 1.90809 1.18944 1.85437 1.48018 1.19105 0.95469 0.88696 1.15359 1.21209 1.00053 0.90940 0.90962 1.21468 0.94342 0.97862 1.09207 1.19464 0.93382 0.83302 0.92044 1.86114 1.35791 1.12635 1.87611 1.22932 0.90334 0.84106 1.07693 1.20470 0.86813 0.87518 0.75249 1.43511 1.11855 1.07794 1.76130 1.90816 1.16913 1.87916 1.50826 1.20592 1.00677 0.90261 1.07422 1.21386 0.94526 0.96697 0.91072 0.91905 0.91311 0.91284 0.90186 0.90182 0.90728 0.90728 0.83424 0.80418 0.84949 0.84965 0.74385 0.75384 0.83464 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.63 13.22 21.65 0.29 -54.35 16 2 C 0.02 0.99 5.49 84.86 0.47 1.45 16 3 Si 0.99 43.88 29.55 68.60 2.03 45.90 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.54 -31.22 9.50 67.95 0.65 -30.57 16 8 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 9 S -0.18 -9.76 21.44 -56.49 -1.21 -10.97 16 10 C -0.09 -3.64 5.67 71.98 0.41 -3.24 16 11 C -0.09 -2.75 5.60 30.60 0.17 -2.58 16 12 C 0.08 2.30 5.48 71.98 0.39 2.70 16 13 O -0.35 -9.63 9.46 -56.62 -0.54 -10.16 16 14 C 0.51 13.48 7.89 70.26 0.55 14.04 16 15 O -0.54 -16.65 16.13 19.84 0.32 -16.33 16 16 C -0.18 -3.77 5.87 -20.09 -0.12 -3.88 16 17 C -0.01 -0.20 9.59 22.51 0.22 0.01 16 18 C -0.21 -2.07 9.01 22.33 0.20 -1.87 16 19 C 0.16 2.29 6.70 22.64 0.15 2.45 16 20 O -0.31 -4.53 9.66 -71.10 -0.69 -5.21 16 21 C 0.03 0.12 5.21 71.24 0.37 0.50 16 22 C 0.52 5.09 8.18 87.66 0.72 5.81 16 23 N -0.83 -0.08 8.87 -173.53 -1.54 -1.62 16 24 O -0.59 -13.49 17.34 16.02 0.28 -13.21 16 25 C -0.17 -2.77 9.97 22.32 0.22 -2.55 16 26 C -0.02 -0.33 9.61 22.51 0.22 -0.12 16 27 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.07 2.66 8.14 -2.40 -0.02 2.64 16 29 H 0.07 2.67 8.14 -2.40 -0.02 2.65 16 30 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.15 2.04 7.64 -2.91 -0.02 2.02 16 35 H 0.18 0.15 6.28 -2.91 -0.02 0.14 16 36 H 0.13 -0.27 7.64 -2.39 -0.02 -0.29 16 37 H 0.13 -0.27 7.66 -2.39 -0.02 -0.29 16 38 H 0.42 -3.37 8.83 -92.71 -0.82 -4.19 16 39 H 0.41 -0.07 8.93 -92.70 -0.83 -0.89 16 40 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.15 2.56 7.60 -2.91 -0.02 2.54 16 Total: -1.00 -84.72 378.35 3.00 -81.72 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -0.56 Total: 2.09 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 4.62 Total: -17.86 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -1.25 Total: -55.96 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.62 Total: -44.92 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -9.76 SS G_CDS: -1.21 Total: -10.97 kcal Total: -84.72 3.00 -81.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805354397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.326 kcal (2) G-P(sol) polarization free energy of solvation -84.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds