Wall clock time and date at job start Tue Mar 31 2020 22:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48500 * 109.47356 * 270.00073 * 3 2 1 5 5 H 1.48505 * 109.47146 * 29.99980 * 3 2 1 6 6 H 1.48501 * 109.47266 * 149.99754 * 3 2 1 7 7 C 1.38799 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00283 * 0.02562 * 7 2 1 9 9 S 1.76204 * 120.00068 * 179.97438 * 7 2 1 10 10 C 1.80993 * 99.99991 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47144 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47205 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47500 * 179.97438 * 12 11 10 14 14 C 1.34749 * 117.00645 * 180.02562 * 13 12 11 15 15 O 1.21508 * 119.99764 * 359.97438 * 14 13 12 16 16 C 1.47397 * 120.00301 * 180.02562 * 14 13 12 17 17 C 1.39768 * 120.19768 * 359.97438 * 16 14 13 18 18 C 1.37765 * 119.90177 * 179.97438 * 17 16 14 19 19 C 1.38557 * 120.31024 * 0.02655 * 18 17 16 20 20 C 1.38060 * 120.40270 * 359.97438 * 19 18 17 21 21 C 1.38702 * 120.08999 * 359.95400 * 20 19 18 22 22 O 1.35638 * 120.15986 * 180.02562 * 21 20 19 23 23 C 1.42908 * 116.99244 * 0.02562 * 22 21 20 24 24 C 1.50704 * 109.46785 * 179.97438 * 23 22 21 25 25 N 1.34771 * 120.00056 * 179.97438 * 24 23 22 26 26 O 1.21285 * 119.99764 * 0.02562 * 24 23 22 27 27 H 0.96999 * 119.99519 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47291 * 60.00410 * 10 9 7 29 29 H 1.09005 * 109.47307 * 300.00119 * 10 9 7 30 30 H 1.09002 * 109.47450 * 59.99905 * 11 10 9 31 31 H 1.08992 * 109.47077 * 299.99867 * 11 10 9 32 32 H 1.08999 * 109.47083 * 60.00183 * 12 11 10 33 33 H 1.08997 * 109.47599 * 300.00210 * 12 11 10 34 34 H 1.08004 * 120.04558 * 0.26071 * 17 16 14 35 35 H 1.08001 * 119.84001 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.80284 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.94995 * 179.97438 * 20 19 18 38 38 H 1.08996 * 109.47290 * 299.99827 * 23 22 21 39 39 H 1.08993 * 109.47176 * 60.00300 * 23 22 21 40 40 H 0.97007 * 119.99979 * 359.97438 * 25 24 23 41 41 H 0.96998 * 120.00485 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2020 -0.0001 10 6 4.0867 -2.9844 0.0001 11 6 5.5958 -3.2362 0.0002 12 6 5.8615 -4.7429 0.0011 13 8 7.2937 -4.9819 0.0006 14 6 7.6997 -6.2668 0.0008 15 8 6.8793 -7.1631 0.0017 16 6 9.1389 -6.5851 0.0008 17 6 10.0862 -5.5574 0.0002 18 6 11.4297 -5.8618 0.0009 19 6 11.8474 -7.1829 0.0015 20 6 10.9227 -8.2080 0.0021 21 6 9.5658 -7.9205 0.0030 22 8 8.6560 -8.9265 0.0041 23 6 9.1655 -10.2617 0.0048 24 6 8.0170 -11.2375 0.0066 25 7 8.2591 -12.5633 0.0070 26 8 6.8747 -10.8297 0.0067 27 1 -0.4849 0.8401 -0.0004 28 1 3.6435 -3.4317 -0.8896 29 1 3.6441 -3.4313 0.8904 30 1 6.0388 -2.7890 0.8902 31 1 6.0388 -2.7893 -0.8897 32 1 5.4186 -5.1905 -0.8886 33 1 5.4186 -5.1895 0.8913 34 1 9.7652 -4.5261 0.0040 35 1 12.1609 -5.0669 0.0008 36 1 12.9028 -7.4122 0.0016 37 1 11.2563 -9.2352 0.0022 38 1 9.7746 -10.4187 -0.8853 39 1 9.7753 -10.4174 0.8946 40 1 9.1727 -12.8895 0.0058 41 1 7.5200 -13.1914 0.0078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805376110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:58 Heat of formation + Delta-G solvation = -169.750323 kcal Electronic energy + Delta-G solvation = -25374.063989 eV Core-core repulsion = 21344.420303 eV Total energy + Delta-G solvation = -4029.643687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.90768 -41.02036 -40.09033 -38.27485 -37.69041 -34.95460 -34.81705 -34.69648 -32.57390 -31.27698 -29.31359 -28.25814 -27.69338 -25.19209 -23.66480 -22.78206 -22.13677 -21.65930 -19.74285 -19.48234 -18.78514 -18.56143 -17.79724 -17.77820 -17.37709 -17.36265 -17.11544 -16.54148 -16.19356 -16.04669 -15.69540 -15.39187 -15.33059 -14.96556 -14.87222 -14.34542 -14.22701 -14.00164 -13.73311 -13.47173 -13.38446 -13.04609 -12.80489 -12.62111 -12.40457 -12.28798 -12.25281 -12.14107 -11.80768 -11.54238 -11.42651 -11.17530 -11.11350 -10.76695 -10.63451 -10.13542 -9.34869 -9.02236 -8.52982 -6.25710 -0.30346 0.37142 1.04026 1.32691 1.43004 1.48063 1.51110 1.54486 1.64767 1.83662 2.24378 2.64059 2.75574 2.77175 2.84672 3.55633 3.73695 3.79363 3.80814 3.93837 4.01583 4.04176 4.08345 4.08703 4.24442 4.26381 4.34710 4.43982 4.53662 4.62230 4.87440 4.95888 5.04223 5.12419 5.29713 5.40045 5.47376 5.68278 5.69702 5.81432 6.09074 6.20287 6.43152 6.73531 6.89931 7.27577 8.60276 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.001966 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.073345 B =14240.607400 C =15886.630600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.035 3.965 3 Si 0.929 3.071 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.226 1.226 7 C -0.528 4.528 8 H 0.048 0.952 9 S -0.199 6.199 10 C -0.076 4.076 11 C -0.083 4.083 12 C 0.080 3.920 13 O -0.352 6.352 14 C 0.494 3.506 15 O -0.525 6.525 16 C -0.193 4.193 17 C -0.029 4.029 18 C -0.167 4.167 19 C -0.029 4.029 20 C -0.218 4.218 21 C 0.169 3.831 22 O -0.304 6.304 23 C 0.027 3.973 24 C 0.508 3.492 25 N -0.825 5.825 26 O -0.584 6.584 27 H 0.277 0.723 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.176 0.824 37 H 0.176 0.824 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.424 0.576 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.175 -23.777 0.113 43.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.169 4.169 3 Si 0.749 3.251 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.149 1.149 7 C -0.676 4.676 8 H 0.067 0.933 9 S 0.029 5.971 10 C -0.224 4.224 11 C -0.122 4.122 12 C 0.005 3.995 13 O -0.269 6.269 14 C 0.341 3.659 15 O -0.415 6.415 16 C -0.195 4.195 17 C -0.048 4.048 18 C -0.185 4.185 19 C -0.047 4.047 20 C -0.236 4.236 21 C 0.122 3.878 22 O -0.216 6.216 23 C -0.051 4.051 24 C 0.292 3.708 25 N -0.392 5.392 26 O -0.462 6.462 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.165 0.835 35 H 0.180 0.820 36 H 0.193 0.807 37 H 0.193 0.807 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.257 0.743 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 35.562 -22.619 0.119 42.146 hybrid contribution -2.041 -1.068 -0.046 2.304 sum 33.521 -23.687 0.073 41.046 Atomic orbital electron populations 1.70049 1.07752 1.29210 1.48992 1.25846 0.95495 1.02987 0.92597 0.85670 0.80778 0.78251 0.80360 1.18405 1.18626 1.14931 1.22362 0.90179 0.96338 1.58708 0.93321 1.83706 1.07377 1.08406 1.97585 1.22977 0.98927 0.96477 1.04060 1.21125 0.92872 0.92890 1.05283 1.22970 0.77051 0.97058 1.02469 1.86467 1.27755 1.28296 1.84394 1.21628 0.90796 0.80572 0.72943 1.90958 1.55998 1.48134 1.46366 1.18664 0.89081 0.92865 1.18923 1.21557 0.93002 0.98489 0.91704 1.21497 0.94792 0.98553 1.03630 1.21761 1.01520 0.91367 0.90021 1.21621 0.89064 1.03344 1.09554 1.19325 0.89726 0.86183 0.92577 1.86385 1.33807 1.14276 1.87115 1.22941 0.95143 0.79448 1.07545 1.20631 0.89810 0.84906 0.75478 1.43458 1.14241 1.05014 1.76485 1.90882 1.25627 1.79504 1.50219 0.91328 0.91311 0.91279 0.89270 0.89254 0.91578 0.91563 0.83476 0.81968 0.80692 0.80674 0.84791 0.84801 0.74317 0.75565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.11 13.97 21.65 0.30 -57.81 16 2 C 0.04 2.13 5.50 84.86 0.47 2.60 16 3 Si 0.93 44.69 27.74 68.60 1.90 46.60 16 4 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.23 -10.39 6.74 99.48 0.67 -9.72 16 7 C -0.53 -32.12 10.04 67.95 0.68 -31.44 16 8 H 0.05 3.24 8.03 -2.91 -0.02 3.21 16 9 S -0.20 -9.79 19.41 -56.49 -1.10 -10.89 16 10 C -0.08 -3.08 5.67 71.98 0.41 -2.67 16 11 C -0.08 -2.68 5.60 30.59 0.17 -2.51 16 12 C 0.08 2.58 5.48 71.98 0.39 2.97 16 13 O -0.35 -10.87 9.47 -56.59 -0.54 -11.41 16 14 C 0.49 16.24 7.89 70.23 0.55 16.79 16 15 O -0.52 -21.53 14.95 26.81 0.40 -21.13 16 16 C -0.19 -4.70 5.89 -20.02 -0.12 -4.82 16 17 C -0.03 -0.49 9.61 22.53 0.22 -0.28 16 18 C -0.17 -1.54 10.02 22.23 0.22 -1.32 16 19 C -0.03 -0.17 10.03 22.30 0.22 0.06 16 20 C -0.22 -1.90 9.03 22.34 0.20 -1.70 16 21 C 0.17 3.40 6.70 22.86 0.15 3.55 16 22 O -0.30 -7.54 7.74 -60.58 -0.47 -8.01 16 23 C 0.03 0.30 5.22 71.24 0.37 0.67 16 24 C 0.51 8.97 8.18 87.66 0.72 9.69 16 25 N -0.82 -4.74 8.87 -173.53 -1.54 -6.28 16 26 O -0.58 -19.63 17.34 15.99 0.28 -19.36 16 27 H 0.28 16.04 8.31 -92.71 -0.77 15.27 16 28 H 0.07 2.83 8.14 -2.40 -0.02 2.81 16 29 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.15 2.34 7.61 -2.91 -0.02 2.32 16 35 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.18 -0.43 8.06 -2.91 -0.02 -0.45 16 37 H 0.18 0.01 6.30 -2.91 -0.02 -0.01 16 38 H 0.13 0.37 7.66 -2.39 -0.02 0.36 16 39 H 0.13 0.37 7.66 -2.39 -0.02 0.36 16 40 H 0.42 -1.60 8.83 -92.70 -0.82 -2.42 16 41 H 0.41 2.36 8.93 -92.71 -0.83 1.53 16 Total: -1.00 -96.16 373.58 3.31 -92.85 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -0.60 Total: 3.84 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 4.67 Total: -8.41 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -1.24 Total: -64.08 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: -0.33 Total: -59.90 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.60 kcal Atomic # 16 Polarization: -9.79 SS G_CDS: -1.10 Total: -10.89 kcal Total: -96.16 3.31 -92.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805376110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.897 kcal (2) G-P(sol) polarization free energy of solvation -96.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds