Wall clock time and date at job start Tue Mar 31 2020 22:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48492 * 109.46898 * 239.99813 * 3 2 1 5 5 H 1.48501 * 109.46815 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46939 * 119.99678 * 3 2 1 7 7 C 1.38801 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00000 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99630 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46826 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46986 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.47034 * 180.02562 * 12 11 10 14 14 C 1.34709 * 117.00097 * 180.02562 * 13 12 11 15 15 O 1.21471 * 119.99772 * 359.97438 * 14 13 12 16 16 C 1.47744 * 120.00102 * 180.02562 * 14 13 12 17 17 C 1.39656 * 120.12440 * 359.97115 * 16 14 13 18 18 C 1.37947 * 119.96118 * 180.02562 * 17 16 14 19 19 C 1.38296 * 120.21165 * 359.72196 * 18 17 16 20 20 C 1.38817 * 120.24942 * 0.55764 * 19 18 17 21 21 O 1.35910 * 119.98516 * 179.72160 * 20 19 18 22 22 C 1.42899 * 116.99557 * 359.72179 * 21 20 19 23 23 C 1.50702 * 109.46876 * 179.97438 * 22 21 20 24 24 N 1.34777 * 119.99928 * 179.72354 * 23 22 21 25 25 O 1.21283 * 120.00262 * 0.02562 * 23 22 21 26 26 C 1.38485 * 120.03612 * 359.44408 * 20 19 18 27 27 H 0.97004 * 120.00346 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47403 * 59.99998 * 10 9 7 29 29 H 1.09004 * 109.47316 * 299.99668 * 10 9 7 30 30 H 1.09002 * 109.47001 * 60.00093 * 11 10 9 31 31 H 1.08996 * 109.47031 * 300.00190 * 11 10 9 32 32 H 1.08994 * 109.47383 * 59.99884 * 12 11 10 33 33 H 1.09004 * 109.47176 * 299.99653 * 12 11 10 34 34 H 1.08003 * 120.01631 * 0.02562 * 17 16 14 35 35 H 1.07996 * 119.89035 * 179.97438 * 18 17 16 36 36 H 1.07994 * 119.87423 * 180.27257 * 19 18 17 37 37 H 1.09004 * 109.47206 * 60.00261 * 22 21 20 38 38 H 1.08994 * 109.47548 * 299.99917 * 22 21 20 39 39 H 0.96999 * 120.00047 * 180.27521 * 24 23 22 40 40 H 0.97000 * 120.00317 * 0.28382 * 24 23 22 41 41 H 1.08000 * 120.11143 * 180.25383 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9792 -5.3243 -0.0001 12 6 3.1513 -6.3077 0.0005 13 8 2.6421 -7.6675 -0.0007 14 6 3.5516 -8.6612 0.0002 15 8 4.7377 -8.3989 0.0015 16 6 3.1067 -10.0700 -0.0015 17 6 1.7437 -10.3746 -0.0035 18 6 1.3320 -11.6911 -0.0045 19 6 2.2649 -12.7120 -0.0095 20 6 3.6218 -12.4194 -0.0017 21 8 4.5340 -13.4269 -0.0009 22 6 4.0254 -14.7623 -0.0021 23 6 5.1745 -15.7374 -0.0016 24 7 4.9331 -17.0633 0.0031 25 8 6.3165 -15.3289 0.0002 26 6 4.0467 -11.1013 -0.0006 27 1 -0.4851 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8895 30 1 1.3709 -5.4840 -0.8903 31 1 1.3704 -5.4846 0.8896 32 1 3.7593 -6.1479 0.8909 33 1 3.7605 -6.1476 -0.8890 34 1 1.0125 -9.5797 -0.0042 35 1 0.2777 -11.9253 -0.0056 36 1 1.9365 -13.7408 -0.0147 37 1 3.4171 -14.9187 -0.8930 38 1 3.4148 -14.9194 0.8870 39 1 5.6727 -17.6909 0.0075 40 1 4.0198 -17.3901 0.0020 41 1 5.1021 -10.8722 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805388946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:36 Heat of formation + Delta-G solvation = -145.206468 kcal Electronic energy + Delta-G solvation = -24487.126450 eV Core-core repulsion = 20458.547065 eV Total energy + Delta-G solvation = -4028.579385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.08258 -40.41873 -39.53687 -37.65963 -36.63064 -34.40220 -33.52300 -32.44006 -31.78490 -30.99206 -28.73745 -26.82327 -25.53446 -24.40036 -22.91029 -21.89626 -21.33421 -20.81046 -19.12747 -18.31294 -17.59553 -17.31194 -17.18603 -16.99136 -16.59926 -16.45860 -16.26550 -15.69624 -14.91168 -14.81502 -14.62100 -14.56702 -14.36156 -14.17348 -13.58384 -13.25923 -13.19164 -12.72970 -12.68616 -12.34893 -12.10836 -11.68281 -11.62245 -11.32848 -11.13375 -10.97890 -10.93461 -10.71591 -10.60843 -10.59785 -10.41027 -10.28966 -9.64183 -9.55874 -9.06392 -8.77063 -8.36072 -6.56142 -6.24247 -3.95382 0.27749 0.93706 1.90344 1.97285 2.31242 2.52049 3.19498 3.23801 3.24739 3.28295 3.37145 3.54775 4.01203 4.19930 4.20888 4.32166 4.32291 4.35092 4.54688 4.80108 4.87436 5.01611 5.10920 5.13466 5.18841 5.38588 5.42458 5.49161 5.66993 5.78020 5.82434 5.90262 5.95291 6.02462 6.11447 6.16159 6.39926 6.45215 6.52638 6.67041 6.79441 7.54348 7.59407 7.64133 8.35182 9.22135 10.83863 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.042813 B = 0.001413 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.842831 B =19811.389471 C =20434.178622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.097 4.097 12 C 0.073 3.927 13 O -0.348 6.348 14 C 0.507 3.493 15 O -0.501 6.501 16 C -0.080 4.080 17 C -0.095 4.095 18 C -0.091 4.091 19 C -0.179 4.179 20 C 0.115 3.885 21 O -0.287 6.287 22 C 0.039 3.961 23 C 0.519 3.481 24 N -0.851 5.851 25 O -0.515 6.515 26 C -0.084 4.084 27 H 0.268 0.732 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.410 0.590 40 H 0.403 0.597 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 -36.263 -0.008 36.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.265 6.265 14 C 0.351 3.649 15 O -0.390 6.390 16 C -0.082 4.082 17 C -0.113 4.113 18 C -0.109 4.109 19 C -0.197 4.197 20 C 0.070 3.930 21 O -0.200 6.200 22 C -0.040 4.040 23 C 0.302 3.698 24 N -0.418 5.418 25 O -0.388 6.388 26 C -0.102 4.102 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.242 0.758 40 H 0.232 0.768 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.772 -35.710 -0.007 35.754 hybrid contribution 1.581 0.748 -0.002 1.749 sum 3.353 -34.962 -0.009 35.122 Atomic orbital electron populations 1.70006 1.05930 1.27518 1.47070 1.25006 0.95082 0.99089 0.94482 0.86211 0.79236 0.81116 0.78905 1.19901 1.20790 1.19895 1.22664 0.94581 0.90702 1.58810 0.90877 1.84630 1.08777 0.99208 1.96894 1.23186 1.03462 0.96308 1.03407 1.21288 0.96410 0.91540 1.04350 1.23331 0.97885 0.76122 1.02836 1.86504 1.39535 1.16917 1.83521 1.20981 0.84268 0.86400 0.73274 1.90857 1.17978 1.84936 1.45213 1.18878 0.94029 0.89512 1.05752 1.21512 0.94689 0.97555 0.97556 1.20969 0.99888 0.91793 0.98267 1.21484 0.91849 1.00745 1.05664 1.18687 0.87940 0.87862 0.98536 1.86181 1.32429 1.12410 1.88977 1.22468 0.95618 0.81749 1.04208 1.20042 0.90121 0.83375 0.76295 1.43651 1.12840 1.06627 1.78662 1.90846 1.22774 1.78200 1.46993 1.20438 1.01202 0.88381 1.00208 0.92198 0.91683 0.91689 0.90283 0.90292 0.90937 0.90947 0.83664 0.84488 0.84886 0.88582 0.88559 0.75836 0.76821 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.85 9.50 30.94 0.29 -14.55 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.12 -3.19 21.44 -107.50 -2.30 -5.49 16 10 C -0.12 -2.29 5.67 37.16 0.21 -2.08 16 11 C -0.10 -1.57 5.60 -26.73 -0.15 -1.72 16 12 C 0.07 1.06 5.48 37.16 0.20 1.27 16 13 O -0.35 -4.83 9.47 -40.52 -0.38 -5.22 16 14 C 0.51 7.05 7.90 34.62 0.27 7.32 16 15 O -0.50 -8.27 16.13 -19.24 -0.31 -8.58 16 16 C -0.08 -0.90 5.87 -105.00 -0.62 -1.52 16 17 C -0.09 -0.83 9.61 -39.16 -0.38 -1.20 16 18 C -0.09 -0.58 10.02 -39.67 -0.40 -0.97 16 19 C -0.18 -1.08 9.03 -39.35 -0.36 -1.43 16 20 C 0.11 1.02 6.68 -39.28 -0.26 0.76 16 21 O -0.29 -2.67 9.67 -39.37 -0.38 -3.05 16 22 C 0.04 0.17 5.22 36.01 0.19 0.36 16 23 C 0.52 3.28 8.18 -10.98 -0.09 3.20 16 24 N -0.85 -1.36 8.87 31.22 0.28 -1.08 16 25 O -0.51 -6.28 17.34 -14.35 -0.25 -6.53 16 26 C -0.08 -0.91 9.53 -39.00 -0.37 -1.28 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 29 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.15 1.17 7.61 -52.48 -0.40 0.77 16 35 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.13 0.33 6.28 -52.49 -0.33 0.00 16 37 H 0.10 0.15 7.64 -51.93 -0.40 -0.25 16 38 H 0.10 0.15 7.67 -51.93 -0.40 -0.25 16 39 H 0.41 0.48 8.93 -40.82 -0.36 0.11 16 40 H 0.40 -0.82 8.83 -40.82 -0.36 -1.18 16 41 H 0.15 1.75 7.65 -52.49 -0.40 1.35 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -38.01 378.42 -8.64 -46.65 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -5.15 Total: -3.87 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.55 Total: -9.91 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 1.01 Total: -26.19 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -1.32 Total: -23.38 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.30 Total: -5.49 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.01 -8.64 -46.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805388946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.560 kcal (2) G-P(sol) polarization free energy of solvation -38.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds