Wall clock time and date at job start Tue Mar 31 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48492 * 109.46898 * 239.99813 * 3 2 1 5 5 H 1.48501 * 109.46815 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46939 * 119.99678 * 3 2 1 7 7 C 1.38801 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00000 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99630 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46826 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46986 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.47034 * 180.02562 * 12 11 10 14 14 C 1.34709 * 117.00097 * 180.02562 * 13 12 11 15 15 O 1.21471 * 119.99772 * 359.97438 * 14 13 12 16 16 C 1.47744 * 120.00102 * 180.02562 * 14 13 12 17 17 C 1.39656 * 120.12440 * 359.97115 * 16 14 13 18 18 C 1.37947 * 119.96118 * 180.02562 * 17 16 14 19 19 C 1.38296 * 120.21165 * 359.72196 * 18 17 16 20 20 C 1.38817 * 120.24942 * 0.55764 * 19 18 17 21 21 O 1.35910 * 119.98516 * 179.72160 * 20 19 18 22 22 C 1.42899 * 116.99557 * 359.72179 * 21 20 19 23 23 C 1.50702 * 109.46876 * 179.97438 * 22 21 20 24 24 N 1.34777 * 119.99928 * 179.72354 * 23 22 21 25 25 O 1.21283 * 120.00262 * 0.02562 * 23 22 21 26 26 C 1.38485 * 120.03612 * 359.44408 * 20 19 18 27 27 H 0.97004 * 120.00346 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47403 * 59.99998 * 10 9 7 29 29 H 1.09004 * 109.47316 * 299.99668 * 10 9 7 30 30 H 1.09002 * 109.47001 * 60.00093 * 11 10 9 31 31 H 1.08996 * 109.47031 * 300.00190 * 11 10 9 32 32 H 1.08994 * 109.47383 * 59.99884 * 12 11 10 33 33 H 1.09004 * 109.47176 * 299.99653 * 12 11 10 34 34 H 1.08003 * 120.01631 * 0.02562 * 17 16 14 35 35 H 1.07996 * 119.89035 * 179.97438 * 18 17 16 36 36 H 1.07994 * 119.87423 * 180.27257 * 19 18 17 37 37 H 1.09004 * 109.47206 * 60.00261 * 22 21 20 38 38 H 1.08994 * 109.47548 * 299.99917 * 22 21 20 39 39 H 0.96999 * 120.00047 * 180.27521 * 24 23 22 40 40 H 0.97000 * 120.00317 * 0.28382 * 24 23 22 41 41 H 1.08000 * 120.11143 * 180.25383 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9792 -5.3243 -0.0001 12 6 3.1513 -6.3077 0.0005 13 8 2.6421 -7.6675 -0.0007 14 6 3.5516 -8.6612 0.0002 15 8 4.7377 -8.3989 0.0015 16 6 3.1067 -10.0700 -0.0015 17 6 1.7437 -10.3746 -0.0035 18 6 1.3320 -11.6911 -0.0045 19 6 2.2649 -12.7120 -0.0095 20 6 3.6218 -12.4194 -0.0017 21 8 4.5340 -13.4269 -0.0009 22 6 4.0254 -14.7623 -0.0021 23 6 5.1745 -15.7374 -0.0016 24 7 4.9331 -17.0633 0.0031 25 8 6.3165 -15.3289 0.0002 26 6 4.0467 -11.1013 -0.0006 27 1 -0.4851 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8895 30 1 1.3709 -5.4840 -0.8903 31 1 1.3704 -5.4846 0.8896 32 1 3.7593 -6.1479 0.8909 33 1 3.7605 -6.1476 -0.8890 34 1 1.0125 -9.5797 -0.0042 35 1 0.2777 -11.9253 -0.0056 36 1 1.9365 -13.7408 -0.0147 37 1 3.4171 -14.9187 -0.8930 38 1 3.4148 -14.9194 0.8870 39 1 5.6727 -17.6909 0.0075 40 1 4.0198 -17.3901 0.0020 41 1 5.1021 -10.8722 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805388946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:35 Heat of formation + Delta-G solvation = -171.747155 kcal Electronic energy + Delta-G solvation = -24488.277341 eV Core-core repulsion = 20458.547065 eV Total energy + Delta-G solvation = -4029.730276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.85151 -41.23056 -40.14320 -38.34940 -37.73807 -34.92777 -34.80113 -34.58197 -32.44332 -31.59628 -29.15497 -28.27587 -27.52201 -25.32281 -23.52586 -22.80324 -22.46828 -21.46252 -19.90141 -19.48762 -18.68759 -18.41409 -17.79734 -17.79576 -17.38306 -17.06301 -16.97513 -16.89452 -16.32200 -16.13070 -16.03154 -15.41505 -15.08168 -14.94176 -14.73881 -14.35481 -14.25848 -13.87601 -13.81071 -13.51400 -13.14929 -12.93723 -12.90513 -12.64830 -12.44310 -12.42135 -12.24104 -12.14100 -11.79320 -11.55233 -11.46802 -11.13918 -11.13528 -10.75328 -10.36871 -10.19867 -9.37777 -8.67515 -8.37876 -6.14284 -0.46140 0.32125 1.19813 1.35695 1.39563 1.41205 1.48216 1.48442 1.67092 1.88042 2.27278 2.68480 2.83029 2.96717 3.27739 3.48935 3.67030 3.83803 3.87338 3.95701 3.98723 4.10530 4.12706 4.14154 4.15356 4.25319 4.31406 4.36930 4.55083 4.68056 4.80304 5.01368 5.04164 5.13467 5.25046 5.29090 5.35867 5.39908 5.54639 5.81622 6.17663 6.21056 6.43222 6.55501 7.04659 7.26605 8.71224 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.042813 B = 0.001413 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.842831 B =19811.389471 C =20434.178622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 0.992 3.008 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.073 0.927 9 S -0.180 6.180 10 C -0.094 4.094 11 C -0.084 4.084 12 C 0.079 3.921 13 O -0.344 6.344 14 C 0.506 3.494 15 O -0.538 6.538 16 C -0.103 4.103 17 C -0.097 4.097 18 C -0.080 4.080 19 C -0.156 4.156 20 C 0.111 3.889 21 O -0.322 6.322 22 C 0.030 3.970 23 C 0.513 3.487 24 N -0.825 5.825 25 O -0.589 6.589 26 C -0.110 4.110 27 H 0.272 0.728 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.151 0.849 35 H 0.177 0.823 36 H 0.182 0.818 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.413 0.587 40 H 0.424 0.576 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 -38.648 -0.015 38.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.692 4.692 8 H 0.091 0.909 9 S 0.049 5.951 10 C -0.243 4.243 11 C -0.122 4.122 12 C 0.004 3.996 13 O -0.261 6.261 14 C 0.353 3.647 15 O -0.429 6.429 16 C -0.104 4.104 17 C -0.116 4.116 18 C -0.098 4.098 19 C -0.174 4.174 20 C 0.066 3.934 21 O -0.236 6.236 22 C -0.047 4.047 23 C 0.297 3.703 24 N -0.392 5.392 25 O -0.468 6.468 26 C -0.130 4.130 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.168 0.832 35 H 0.194 0.806 36 H 0.199 0.801 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.245 0.755 40 H 0.257 0.743 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.008 -38.167 -0.014 38.167 hybrid contribution 2.068 1.232 0.000 2.407 sum 2.061 -36.935 -0.014 36.993 Atomic orbital electron populations 1.70129 1.07600 1.28696 1.47754 1.26019 0.96011 1.02960 0.93644 0.85096 0.77985 0.76232 0.79304 1.19037 1.19822 1.19026 1.23039 0.94857 0.92082 1.59213 0.90890 1.84569 1.12849 1.00615 1.97065 1.23082 1.00910 0.96643 1.03641 1.21098 0.96819 0.89554 1.04753 1.23104 0.96938 0.76499 1.03050 1.86488 1.39453 1.16552 1.83574 1.21588 0.83766 0.87364 0.72003 1.90831 1.19393 1.85468 1.47254 1.18765 0.95416 0.87543 1.08690 1.21701 0.93283 0.99342 0.97231 1.21431 1.01898 0.90395 0.96035 1.21979 0.89979 1.03126 1.02352 1.18724 0.89248 0.86915 0.98532 1.86145 1.33987 1.14338 1.89099 1.22889 0.95195 0.78985 1.07639 1.20561 0.89682 0.84820 0.75197 1.43492 1.14369 1.05174 1.76143 1.90821 1.25574 1.79561 1.50881 1.20349 1.00027 0.90079 1.02499 0.91862 0.91403 0.91408 0.89902 0.89912 0.90815 0.90826 0.83153 0.80553 0.80129 0.84869 0.84851 0.75459 0.74296 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.34 13.22 21.65 0.29 -54.05 16 2 C 0.02 1.08 5.49 84.86 0.47 1.54 16 3 Si 0.99 43.98 29.55 68.60 2.03 46.01 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -31.44 9.50 67.95 0.65 -30.79 16 8 H 0.07 4.07 7.80 -2.91 -0.02 4.04 16 9 S -0.18 -9.45 21.44 -56.49 -1.21 -10.66 16 10 C -0.09 -3.74 5.67 71.98 0.41 -3.33 16 11 C -0.08 -2.67 5.60 30.60 0.17 -2.50 16 12 C 0.08 2.31 5.48 71.98 0.39 2.70 16 13 O -0.34 -9.59 9.47 -56.19 -0.53 -10.12 16 14 C 0.51 14.65 7.90 70.34 0.56 15.21 16 15 O -0.54 -18.91 16.13 19.93 0.32 -18.59 16 16 C -0.10 -2.34 5.87 -20.11 -0.12 -2.46 16 17 C -0.10 -1.51 9.61 22.54 0.22 -1.29 16 18 C -0.08 -0.66 10.02 22.21 0.22 -0.44 16 19 C -0.16 -1.19 9.03 22.42 0.20 -0.99 16 20 C 0.11 1.82 6.68 22.47 0.15 1.97 16 21 O -0.32 -5.72 9.67 -73.50 -0.71 -6.43 16 22 C 0.03 0.17 5.22 71.24 0.37 0.54 16 23 C 0.51 5.84 8.18 87.66 0.72 6.55 16 24 N -0.82 -0.69 8.87 -173.53 -1.54 -2.23 16 25 O -0.59 -15.00 17.34 16.00 0.28 -14.72 16 26 C -0.11 -2.54 9.53 22.64 0.22 -2.32 16 27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.07 2.66 8.14 -2.40 -0.02 2.64 16 29 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.15 2.12 7.61 -2.91 -0.02 2.10 16 35 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 36 H 0.18 -0.39 6.28 -2.91 -0.02 -0.41 16 37 H 0.13 -0.25 7.64 -2.38 -0.02 -0.27 16 38 H 0.13 -0.25 7.67 -2.39 -0.02 -0.27 16 39 H 0.41 0.30 8.93 -92.71 -0.83 -0.53 16 40 H 0.42 -3.31 8.83 -92.71 -0.82 -4.12 16 41 H 0.12 3.29 7.65 -2.91 -0.02 3.27 16 Total: -1.00 -88.58 378.42 2.98 -85.60 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -0.56 Total: 0.81 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.62 Total: -15.61 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -1.25 Total: -56.28 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -0.64 Total: -49.86 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -9.45 SS G_CDS: -1.21 Total: -10.66 kcal Total: -88.58 2.98 -85.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805388946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.145 kcal (2) G-P(sol) polarization free energy of solvation -88.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds