Wall clock time and date at job start Tue Mar 31 2020 22:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99769 * 2 1 4 4 H 1.48506 * 109.47333 * 270.00256 * 3 2 1 5 5 H 1.48491 * 109.47477 * 30.00347 * 3 2 1 6 6 H 1.48501 * 109.46949 * 150.00424 * 3 2 1 7 7 C 1.37878 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99693 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46528 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46721 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47082 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47294 * 180.02562 * 12 11 10 14 14 O 1.20826 * 119.99867 * 359.97438 * 13 12 11 15 15 O 1.34228 * 120.00456 * 180.02562 * 13 12 11 16 16 C 1.45198 * 117.00287 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47101 * 179.97438 * 16 15 13 18 18 O 1.21246 * 120.00132 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00323 * 179.97438 * 17 16 15 20 20 C 1.34774 * 119.99919 * 179.97438 * 19 17 16 21 21 O 1.21664 * 120.00298 * 0.02562 * 20 19 17 22 22 C 1.46437 * 119.99353 * 179.97438 * 20 19 17 23 23 C 1.36761 * 125.45863 * 180.02562 * 22 20 19 24 24 C 1.37415 * 113.28379 * 179.97438 * 23 22 20 25 25 C 1.33858 * 115.11391 * 0.02562 * 24 23 22 26 26 S 1.70621 * 110.96030 * 359.97438 * 25 24 23 27 27 H 0.97001 * 119.99709 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47515 * 60.00425 * 9 7 2 29 29 H 1.08997 * 109.46682 * 299.99402 * 9 7 2 30 30 H 1.09000 * 109.47386 * 59.99871 * 10 9 7 31 31 H 1.09005 * 109.47330 * 299.99678 * 10 9 7 32 32 H 1.09000 * 109.46952 * 60.00026 * 11 10 9 33 33 H 1.09000 * 109.47419 * 299.99634 * 11 10 9 34 34 H 1.09000 * 109.47204 * 60.00183 * 12 11 10 35 35 H 1.09000 * 109.46697 * 300.00079 * 12 11 10 36 36 H 1.09004 * 109.46796 * 60.00086 * 16 15 13 37 37 H 1.08994 * 109.47475 * 299.99551 * 16 15 13 38 38 H 0.97000 * 119.99722 * 0.02562 * 19 17 16 39 39 H 1.07995 * 123.35569 * 0.24058 * 23 22 20 40 40 H 1.08002 * 122.43822 * 180.02562 * 24 23 22 41 41 H 1.07995 * 124.52149 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 0.0001 12 6 2.4746 -6.1500 -0.0005 13 6 1.7211 -7.4551 -0.0005 14 8 0.5129 -7.4551 0.0004 15 8 2.3922 -8.6176 -0.0005 16 6 1.6014 -9.8353 0.0000 17 6 2.5194 -11.0304 -0.0007 18 8 3.7214 -10.8716 -0.0011 19 7 2.0043 -12.2759 0.0002 20 6 2.8254 -13.3447 -0.0010 21 8 4.0315 -13.1853 -0.0023 22 6 2.2656 -14.6978 0.0006 23 6 2.9917 -15.8568 0.0001 24 6 2.2104 -16.9872 0.0024 25 6 0.8903 -16.7655 0.0042 26 16 0.5524 -15.0931 0.0037 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6248 -2.5570 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 0.8534 -5.0450 -0.8897 33 1 0.8540 -5.0446 0.8903 34 1 3.1019 -6.0922 0.8890 35 1 3.1006 -6.0923 -0.8910 36 1 0.9722 -9.8603 -0.8897 37 1 0.9730 -9.8601 0.8902 38 1 1.0427 -12.4030 0.0009 39 1 4.0714 -15.8811 0.0023 40 1 2.6309 -17.9820 0.0028 41 1 0.1394 -17.5416 0.0057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:20 Heat of formation + Delta-G solvation = -134.034874 kcal Electronic energy + Delta-G solvation = -24595.746945 eV Core-core repulsion = 20567.651996 eV Total energy + Delta-G solvation = -4028.094949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69727 -40.58765 -38.97760 -37.83606 -36.67394 -35.23079 -35.01150 -32.70590 -30.87872 -30.27687 -29.21672 -26.24668 -25.66402 -23.53724 -22.62692 -21.17144 -20.68718 -20.13786 -20.04261 -19.53546 -17.96447 -17.38918 -17.28291 -16.65620 -16.36906 -16.29367 -16.16016 -15.95673 -15.11770 -14.61012 -14.48929 -14.37365 -14.33752 -13.57929 -13.46691 -13.15521 -13.09506 -12.97959 -12.65401 -12.30168 -11.78508 -11.75802 -11.68044 -11.44235 -11.10682 -11.00957 -10.75620 -10.65870 -10.60620 -10.48899 -10.46539 -10.13207 -9.65643 -9.62075 -9.31196 -9.29655 -9.02612 -8.31539 -5.96612 -3.99040 -0.26974 0.71946 1.12728 1.35052 1.64501 1.90093 2.13398 2.64628 2.71782 3.34311 3.40480 3.43950 3.75688 3.97825 4.31587 4.48542 4.52838 4.54415 4.58346 4.75248 4.78723 5.20483 5.22786 5.25284 5.39156 5.41058 5.50572 5.61366 5.67059 5.97609 6.03809 6.13534 6.21423 6.44910 6.75313 6.92992 7.15510 7.25980 7.31380 7.63540 7.71938 7.86366 8.04064 8.46065 9.08472 9.64941 11.14684 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.045610 B = 0.001355 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.748964 B =20664.804864 C =21242.199428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.108 4.108 12 C -0.110 4.110 13 C 0.464 3.536 14 O -0.502 6.502 15 O -0.337 6.337 16 C 0.047 3.953 17 C 0.510 3.490 18 O -0.437 6.437 19 N -0.684 5.684 20 C 0.590 3.410 21 O -0.454 6.454 22 C -0.283 4.283 23 C -0.041 4.041 24 C -0.152 4.152 25 C -0.218 4.218 26 S 0.208 5.792 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.413 0.587 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 -38.754 0.015 38.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.149 4.149 11 C -0.146 4.146 12 C -0.148 4.148 13 C 0.308 3.692 14 O -0.389 6.389 15 O -0.254 6.254 16 C -0.031 4.031 17 C 0.295 3.705 18 O -0.303 6.303 19 N -0.349 5.349 20 C 0.377 3.623 21 O -0.325 6.325 22 C -0.403 4.403 23 C -0.074 4.074 24 C -0.182 4.182 25 C -0.356 4.356 26 S 0.475 5.525 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.249 0.751 39 H 0.175 0.825 40 H 0.168 0.832 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.225 -37.562 0.022 37.582 hybrid contribution 0.824 -0.352 -0.013 0.896 sum -0.401 -37.914 0.009 37.916 Atomic orbital electron populations 1.69974 1.06056 1.26532 1.50939 1.25032 0.94836 0.99240 0.95384 0.86605 0.79852 0.83530 0.78073 1.20696 1.21260 1.19881 1.21283 0.93055 0.91147 1.50466 0.92665 1.19098 0.94020 0.91230 0.97356 1.21661 0.99183 0.93458 1.00551 1.21598 0.97047 0.92641 1.03274 1.21658 1.00016 0.87116 1.05982 1.24418 0.87672 0.85436 0.71694 1.90684 1.15498 1.87583 1.45137 1.86625 1.40449 1.13648 1.84670 1.22577 0.92587 0.81969 1.05922 1.20558 0.89791 0.83384 0.76738 1.90902 1.14711 1.85011 1.39685 1.44594 1.12459 1.06805 1.71082 1.17141 0.86267 0.82717 0.76148 1.90993 1.13385 1.85477 1.42618 1.24451 0.98184 0.96764 1.20901 1.20912 1.02064 0.89618 0.94855 1.20108 0.92400 1.00495 1.05241 1.25429 1.01137 1.01376 1.07613 1.83014 1.02878 0.99232 1.67346 0.93048 0.96533 0.96531 0.93113 0.93112 0.91468 0.91459 0.87500 0.87508 0.87273 0.87264 0.75137 0.82483 0.83208 0.80915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 11 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 12 C -0.11 -1.44 5.81 -27.88 -0.16 -1.61 16 13 C 0.46 6.24 7.96 36.00 0.29 6.53 16 14 O -0.50 -7.76 15.73 -18.75 -0.29 -8.06 16 15 O -0.34 -4.20 9.75 -45.90 -0.45 -4.65 16 16 C 0.05 0.41 5.94 36.01 0.21 0.62 16 17 C 0.51 5.23 7.85 -10.98 -0.09 5.15 16 18 O -0.44 -6.80 14.90 -25.38 -0.38 -7.18 16 19 N -0.68 -4.91 5.23 -12.64 -0.07 -4.98 16 20 C 0.59 5.61 7.72 -12.96 -0.10 5.51 16 21 O -0.45 -6.46 15.24 -18.58 -0.28 -6.74 16 22 C -0.28 -1.84 6.45 -36.82 -0.24 -2.08 16 23 C -0.04 -0.24 10.01 -40.42 -0.40 -0.64 16 24 C -0.15 -0.58 10.15 -41.42 -0.42 -1.00 16 25 C -0.22 -0.64 10.92 29.19 0.32 -0.33 16 26 S 0.21 0.67 22.15 -107.50 -2.38 -1.71 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 33 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.11 0.70 8.13 -51.93 -0.42 0.28 16 37 H 0.11 0.70 8.13 -51.93 -0.42 0.28 16 38 H 0.41 1.22 7.80 -40.82 -0.32 0.90 16 39 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 41 H 0.17 0.11 8.06 -52.49 -0.42 -0.31 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -38.59 378.51 -9.18 -47.77 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -5.35 Total: -5.06 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.40 Total: -5.41 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.67 Total: -31.46 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -1.40 Total: -26.63 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.38 Total: -1.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.59 -9.18 -47.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.261 kcal (2) G-P(sol) polarization free energy of solvation -38.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds