Wall clock time and date at job start Tue Mar 31 2020 22:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48504 * 109.47027 * 270.00489 * 3 2 1 5 5 H 1.48503 * 109.47243 * 30.00235 * 3 2 1 6 6 H 1.48498 * 109.47179 * 150.00343 * 3 2 1 7 7 C 1.37882 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99557 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00155 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47162 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47064 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54190 * 68.38016 * 11 10 9 13 13 O 1.42099 * 110.54614 * 291.62623 * 11 10 9 14 14 N 1.65607 * 104.44916 * 180.02562 * 11 10 9 15 15 C 1.34774 * 119.99793 * 65.00170 * 14 11 10 16 16 O 1.21582 * 120.00208 * 359.97438 * 15 14 11 17 17 C 1.47539 * 119.99596 * 180.02562 * 15 14 11 18 18 C 1.39702 * 120.19188 * 359.97438 * 17 15 14 19 19 C 1.37792 * 119.90767 * 180.02562 * 18 17 15 20 20 C 1.38555 * 120.29848 * 359.97438 * 19 18 17 21 21 C 1.38058 * 120.38912 * 0.02562 * 20 19 18 22 22 C 1.38709 * 120.08588 * 0.02562 * 21 20 19 23 23 O 1.35648 * 120.14730 * 180.02562 * 22 21 20 24 24 C 1.42895 * 117.00243 * 354.44977 * 23 22 21 25 25 C 1.53003 * 117.49815 * 224.94630 * 24 23 22 26 26 C 1.53006 * 117.49806 * 156.28775 * 24 23 22 27 27 H 0.97004 * 120.00126 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47487 * 60.00008 * 9 7 2 29 29 H 1.08997 * 109.47203 * 299.99704 * 9 7 2 30 30 H 1.09002 * 109.47018 * 60.00264 * 10 9 7 31 31 H 1.08994 * 109.47186 * 300.00374 * 10 9 7 32 32 H 0.97001 * 119.99621 * 245.00154 * 14 11 10 33 33 H 1.07996 * 120.05251 * 359.97438 * 18 17 15 34 34 H 1.07996 * 119.85067 * 180.25809 * 19 18 17 35 35 H 1.08000 * 119.80336 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.95200 * 179.97438 * 21 20 19 37 37 H 1.08998 * 115.55200 * 10.62225 * 24 23 22 38 38 H 1.08996 * 117.50318 * 0.02562 * 25 24 23 39 39 H 1.09003 * 117.49223 * 145.02214 * 25 24 23 40 40 H 1.09000 * 117.49882 * 214.97563 * 26 24 23 41 41 H 1.08997 * 117.49961 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 16 5.8354 -2.6367 -0.0025 12 8 6.3351 -2.1459 1.2340 13 8 6.3331 -2.1467 -1.2400 14 7 6.2486 -4.2404 -0.0029 15 6 5.9383 -5.0159 -1.0606 16 8 5.3545 -4.5382 -2.0142 17 6 6.3059 -6.4447 -1.0607 18 6 6.9762 -6.9978 0.0331 19 6 7.3173 -8.3328 0.0266 20 6 6.9979 -9.1305 -1.0603 21 6 6.3356 -8.5968 -2.1477 22 6 5.9856 -7.2546 -2.1586 23 8 5.3344 -6.7290 -3.2262 24 6 5.1475 -7.5827 -4.3568 25 6 5.4374 -6.9966 -5.7400 26 6 3.9926 -7.2556 -5.3056 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6805 0.8888 29 1 3.8745 -0.6802 -0.8911 30 1 3.6578 -3.1507 -0.8908 31 1 3.6584 -3.1503 0.8892 32 1 6.7140 -4.6214 0.7581 33 1 7.2276 -6.3797 0.8823 34 1 7.8317 -8.7603 0.8745 35 1 7.2694 -10.1758 -1.0571 36 1 6.0905 -9.2250 -2.9914 37 1 5.3842 -8.6344 -4.1960 38 1 5.7711 -5.9601 -5.7877 39 1 5.8646 -7.6630 -6.4894 40 1 3.4699 -8.0922 -5.7694 41 1 3.3757 -6.3891 -5.0677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805909314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:06 Heat of formation + Delta-G solvation = -78.854086 kcal Electronic energy + Delta-G solvation = -27045.806920 eV Core-core repulsion = 23020.104790 eV Total energy + Delta-G solvation = -4025.702130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00175 -39.48009 -38.07073 -36.76844 -35.70952 -35.58479 -34.44159 -33.91172 -31.57466 -31.45111 -30.23475 -25.98056 -24.76113 -24.21674 -22.70830 -21.70177 -21.42662 -21.09667 -19.60483 -18.99150 -17.96276 -17.64957 -16.89496 -16.30677 -15.92257 -15.68974 -15.63866 -15.32422 -15.09146 -14.72242 -14.55731 -14.35920 -14.24591 -13.97811 -13.61858 -12.82141 -12.77472 -12.56958 -12.37536 -12.22778 -11.89442 -11.81834 -11.79981 -11.69886 -11.56291 -11.23973 -11.19626 -10.82817 -10.78937 -10.41106 -10.39652 -10.24504 -10.04699 -9.60330 -9.50728 -9.31186 -8.62414 -8.53609 -6.12592 -4.13625 0.38754 0.46905 0.97459 2.40269 2.66042 2.66705 3.30272 3.33512 3.36925 3.40913 3.56524 3.91079 4.09597 4.15965 4.39436 4.42804 4.47261 4.58908 4.59003 4.61926 4.74507 4.75736 4.98394 5.07904 5.18946 5.29624 5.33130 5.35319 5.52874 5.59159 5.64524 5.75012 5.82017 5.87938 5.99672 6.26627 6.31315 6.62630 6.84480 6.97066 7.09122 7.54987 7.58274 8.40697 8.88897 9.46659 10.99811 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003359 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.592410 B = 8335.028918 C = 9596.084284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.517 4.517 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.569 4.569 11 S 2.566 3.434 12 O -0.955 6.955 13 O -0.937 6.937 14 N -1.057 6.057 15 C 0.579 3.421 16 O -0.468 6.468 17 C -0.179 4.179 18 C -0.041 4.041 19 C -0.169 4.169 20 C -0.046 4.046 21 C -0.223 4.223 22 C 0.198 3.802 23 O -0.246 6.246 24 C -0.013 4.013 25 C -0.180 4.180 26 C -0.166 4.166 27 H 0.266 0.734 28 H 0.033 0.967 29 H 0.031 0.969 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.425 0.575 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.434 -22.989 -3.834 27.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.556 4.556 8 H 0.097 0.903 9 C -0.045 4.045 10 C -0.703 4.703 11 S 2.666 3.334 12 O -0.945 6.945 13 O -0.927 6.927 14 N -0.819 5.819 15 C 0.367 3.633 16 O -0.339 6.339 17 C -0.185 4.185 18 C -0.060 4.060 19 C -0.187 4.187 20 C -0.064 4.064 21 C -0.241 4.241 22 C 0.149 3.851 23 O -0.156 6.156 24 C -0.069 4.069 25 C -0.217 4.217 26 C -0.203 4.203 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.156 0.844 31 H 0.146 0.854 32 H 0.261 0.739 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.419 -21.613 -4.612 26.947 hybrid contribution 0.090 0.050 0.456 0.467 sum 15.509 -21.562 -4.156 26.884 Atomic orbital electron populations 1.69880 1.06189 1.27215 1.50059 1.24971 0.94826 0.99120 0.94147 0.86924 0.80664 0.83676 0.79180 1.19616 1.20753 1.18624 1.20820 0.87620 0.95001 1.52192 0.90327 1.19431 1.00037 0.87043 0.97971 1.30179 1.18600 1.09844 1.11710 1.06637 0.80154 0.72080 0.74524 1.93594 1.79562 1.76286 1.45088 1.93603 1.78461 1.76235 1.44398 1.55283 1.67160 1.32599 1.26908 1.17902 0.77776 0.86435 0.81233 1.91028 1.37044 1.73887 1.31931 1.19209 1.09830 0.93118 0.96359 1.21211 0.93306 0.95673 0.95771 1.21009 1.04253 0.93636 0.99778 1.21179 0.93391 0.99907 0.91938 1.21259 1.06854 0.94107 1.01927 1.18992 0.88551 0.91092 0.86422 1.86342 1.69119 1.38391 1.21728 1.23214 1.06362 0.94372 0.82980 1.23486 0.98859 1.03732 0.95586 1.23394 0.91917 1.04698 1.00246 0.92391 0.94862 0.95115 0.84420 0.85397 0.73904 0.84580 0.84889 0.85060 0.84293 0.85713 0.87376 0.87751 0.87484 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 21.92 27.47 -169.99 -4.67 17.25 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 8 H 0.08 2.38 7.99 -52.49 -0.42 1.97 16 9 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 10 C -0.57 -11.38 5.82 37.16 0.22 -11.16 16 11 S 2.57 46.78 5.11 -107.50 -0.55 46.23 16 12 O -0.95 -18.38 18.08 -57.54 -1.04 -19.42 16 13 O -0.94 -20.37 17.03 -64.79 -1.10 -21.48 16 14 N -1.06 -14.43 5.55 30.46 0.17 -14.26 16 15 C 0.58 8.86 7.50 -12.47 -0.09 8.77 16 16 O -0.47 -8.99 13.26 -24.08 -0.32 -9.31 16 17 C -0.18 -2.18 5.89 -104.84 -0.62 -2.80 16 18 C -0.04 -0.35 9.53 -39.20 -0.37 -0.72 16 19 C -0.17 -1.13 10.02 -39.63 -0.40 -1.52 16 20 C -0.05 -0.30 10.03 -39.53 -0.40 -0.70 16 21 C -0.22 -1.85 9.18 -39.47 -0.36 -2.21 16 22 C 0.20 2.36 6.69 -38.69 -0.26 2.10 16 23 O -0.25 -3.35 8.46 -40.52 -0.34 -3.70 16 24 C -0.01 -0.12 6.20 -26.73 -0.17 -0.29 16 25 C -0.18 -1.57 10.48 -26.69 -0.28 -1.85 16 26 C -0.17 -1.48 10.48 -26.69 -0.28 -1.76 16 27 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 29 H 0.03 0.76 7.57 -51.93 -0.39 0.36 16 30 H 0.14 2.78 7.19 -51.92 -0.37 2.41 16 31 H 0.13 2.23 8.14 -51.93 -0.42 1.80 16 32 H 0.43 3.93 6.82 -34.47 -0.24 3.69 16 33 H 0.14 0.77 6.40 -52.49 -0.34 0.43 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 36 H 0.14 0.82 5.52 -52.49 -0.29 0.53 16 37 H 0.13 0.81 5.33 -51.93 -0.28 0.53 16 38 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -38.82 359.85 -10.03 -48.86 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.82 Total: 2.77 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -3.55 Total: -25.60 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.94 Total: -41.04 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -2.81 Total: -53.90 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Atomic # 16 Polarization: 46.78 SS G_CDS: -0.55 Total: 46.23 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.82 -10.03 -48.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805909314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.996 kcal (2) G-P(sol) polarization free energy of solvation -38.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds