Wall clock time and date at job start Tue Mar 31 2020 22:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48504 * 109.47027 * 270.00489 * 3 2 1 5 5 H 1.48503 * 109.47243 * 30.00235 * 3 2 1 6 6 H 1.48498 * 109.47179 * 150.00343 * 3 2 1 7 7 C 1.37882 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99557 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00155 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47162 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47064 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54190 * 68.38016 * 11 10 9 13 13 O 1.42099 * 110.54614 * 291.62623 * 11 10 9 14 14 N 1.65607 * 104.44916 * 180.02562 * 11 10 9 15 15 C 1.34774 * 119.99793 * 65.00170 * 14 11 10 16 16 O 1.21582 * 120.00208 * 359.97438 * 15 14 11 17 17 C 1.47539 * 119.99596 * 180.02562 * 15 14 11 18 18 C 1.39702 * 120.19188 * 359.97438 * 17 15 14 19 19 C 1.37792 * 119.90767 * 180.02562 * 18 17 15 20 20 C 1.38555 * 120.29848 * 359.97438 * 19 18 17 21 21 C 1.38058 * 120.38912 * 0.02562 * 20 19 18 22 22 C 1.38709 * 120.08588 * 0.02562 * 21 20 19 23 23 O 1.35648 * 120.14730 * 180.02562 * 22 21 20 24 24 C 1.42895 * 117.00243 * 354.44977 * 23 22 21 25 25 C 1.53003 * 117.49815 * 224.94630 * 24 23 22 26 26 C 1.53006 * 117.49806 * 156.28775 * 24 23 22 27 27 H 0.97004 * 120.00126 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47487 * 60.00008 * 9 7 2 29 29 H 1.08997 * 109.47203 * 299.99704 * 9 7 2 30 30 H 1.09002 * 109.47018 * 60.00264 * 10 9 7 31 31 H 1.08994 * 109.47186 * 300.00374 * 10 9 7 32 32 H 0.97001 * 119.99621 * 245.00154 * 14 11 10 33 33 H 1.07996 * 120.05251 * 359.97438 * 18 17 15 34 34 H 1.07996 * 119.85067 * 180.25809 * 19 18 17 35 35 H 1.08000 * 119.80336 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.95200 * 179.97438 * 21 20 19 37 37 H 1.08998 * 115.55200 * 10.62225 * 24 23 22 38 38 H 1.08996 * 117.50318 * 0.02562 * 25 24 23 39 39 H 1.09003 * 117.49223 * 145.02214 * 25 24 23 40 40 H 1.09000 * 117.49882 * 214.97563 * 26 24 23 41 41 H 1.08997 * 117.49961 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 16 5.8354 -2.6367 -0.0025 12 8 6.3351 -2.1459 1.2340 13 8 6.3331 -2.1467 -1.2400 14 7 6.2486 -4.2404 -0.0029 15 6 5.9383 -5.0159 -1.0606 16 8 5.3545 -4.5382 -2.0142 17 6 6.3059 -6.4447 -1.0607 18 6 6.9762 -6.9978 0.0331 19 6 7.3173 -8.3328 0.0266 20 6 6.9979 -9.1305 -1.0603 21 6 6.3356 -8.5968 -2.1477 22 6 5.9856 -7.2546 -2.1586 23 8 5.3344 -6.7290 -3.2262 24 6 5.1475 -7.5827 -4.3568 25 6 5.4374 -6.9966 -5.7400 26 6 3.9926 -7.2556 -5.3056 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6805 0.8888 29 1 3.8745 -0.6802 -0.8911 30 1 3.6578 -3.1507 -0.8908 31 1 3.6584 -3.1503 0.8892 32 1 6.7140 -4.6214 0.7581 33 1 7.2276 -6.3797 0.8823 34 1 7.8317 -8.7603 0.8745 35 1 7.2694 -10.1758 -1.0571 36 1 6.0905 -9.2250 -2.9914 37 1 5.3842 -8.6344 -4.1960 38 1 5.7711 -5.9601 -5.7877 39 1 5.8646 -7.6630 -6.4894 40 1 3.4699 -8.0922 -5.7694 41 1 3.3757 -6.3891 -5.0677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805909314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:05 Heat of formation + Delta-G solvation = -107.369101 kcal Electronic energy + Delta-G solvation = -27047.043424 eV Core-core repulsion = 23020.104790 eV Total energy + Delta-G solvation = -4026.938634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88424 -40.50252 -38.80768 -38.32056 -37.31029 -36.35620 -35.99099 -35.60835 -33.55279 -32.27761 -30.89292 -27.99826 -25.63126 -24.95007 -23.40786 -23.27983 -22.54575 -22.00785 -20.84776 -20.07784 -19.47601 -18.84272 -18.53056 -17.41839 -17.11322 -16.89055 -16.54025 -16.40446 -16.31631 -16.12629 -15.68645 -15.46281 -15.34440 -15.02646 -14.86365 -14.74259 -13.89812 -13.81547 -13.45967 -13.40295 -13.32708 -13.21297 -13.14558 -13.07657 -12.86812 -12.51012 -12.35360 -12.21772 -12.14197 -11.96495 -11.74036 -11.50881 -11.30683 -11.20017 -11.08372 -10.87418 -10.15918 -9.23519 -8.39256 -6.46048 -1.08535 -0.32770 0.35507 1.24897 1.31256 1.31867 1.42760 1.46103 1.98376 2.27701 2.44174 2.65215 2.86563 2.93978 2.96117 3.21584 3.51967 3.70815 3.84711 3.86449 3.90117 3.92288 3.95077 3.97994 4.18079 4.34617 4.47246 4.49156 4.67476 4.68841 4.78015 4.93208 4.96916 5.00998 5.10666 5.15723 5.29174 5.41955 5.43769 5.63549 5.74449 6.12953 6.38129 6.44490 6.58843 7.17856 8.76592 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003359 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.592410 B = 8335.028918 C = 9596.084284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.014 3.986 3 Si 0.928 3.072 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.245 1.245 7 C -0.531 4.531 8 H 0.045 0.955 9 C -0.014 4.014 10 C -0.579 4.579 11 S 2.605 3.395 12 O -0.959 6.959 13 O -0.972 6.972 14 N -1.036 6.036 15 C 0.575 3.425 16 O -0.518 6.518 17 C -0.212 4.212 18 C -0.042 4.042 19 C -0.162 4.162 20 C -0.033 4.033 21 C -0.224 4.224 22 C 0.170 3.830 23 O -0.288 6.288 24 C -0.023 4.023 25 C -0.179 4.179 26 C -0.172 4.172 27 H 0.271 0.729 28 H 0.044 0.956 29 H 0.028 0.972 30 H 0.127 0.873 31 H 0.150 0.850 32 H 0.446 0.554 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.079 0.921 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.235 -25.614 -2.681 31.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.185 4.185 3 Si 0.750 3.250 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.168 1.168 7 C -0.570 4.570 8 H 0.063 0.937 9 C -0.053 4.053 10 C -0.712 4.712 11 S 2.703 3.297 12 O -0.950 6.950 13 O -0.962 6.962 14 N -0.804 5.804 15 C 0.365 3.635 16 O -0.393 6.393 17 C -0.218 4.218 18 C -0.060 4.060 19 C -0.179 4.179 20 C -0.050 4.050 21 C -0.242 4.242 22 C 0.122 3.878 23 O -0.200 6.200 24 C -0.078 4.078 25 C -0.216 4.216 26 C -0.209 4.209 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.146 0.854 31 H 0.168 0.832 32 H 0.287 0.713 33 H 0.179 0.821 34 H 0.187 0.813 35 H 0.188 0.812 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.098 0.902 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.227 -24.248 -3.416 30.526 hybrid contribution -0.764 0.642 0.120 1.005 sum 17.463 -23.607 -3.296 29.548 Atomic orbital electron populations 1.70008 1.07932 1.28539 1.51353 1.25899 0.95722 1.03138 0.93707 0.85980 0.80111 0.79039 0.79854 1.18877 1.19348 1.16786 1.21106 0.90046 0.93936 1.51910 0.93691 1.19380 0.97462 0.90215 0.98215 1.30177 1.21409 1.07165 1.12434 1.05239 0.78337 0.72691 0.73415 1.93580 1.78984 1.77321 1.45094 1.93560 1.78478 1.77928 1.46258 1.54745 1.66942 1.30958 1.27754 1.18579 0.76618 0.87904 0.80361 1.91003 1.39561 1.74902 1.33804 1.19221 1.12880 0.91071 0.98609 1.21569 0.92236 0.97081 0.95149 1.21491 1.03016 0.92648 1.00784 1.21721 0.90998 1.01686 0.90644 1.21557 1.06581 0.92613 1.03474 1.19420 0.89525 0.92751 0.86131 1.86287 1.69927 1.40609 1.23162 1.23627 1.06393 0.95602 0.82215 1.23529 0.98759 1.02924 0.96387 1.23446 0.91900 1.04669 1.00873 0.91967 0.93732 0.95335 0.85446 0.83212 0.71278 0.82140 0.81344 0.81181 0.82064 0.82306 0.90191 0.84492 0.84403 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.48 13.96 21.45 0.30 -59.18 16 2 C 0.01 0.84 5.47 84.66 0.46 1.31 16 3 Si 0.93 45.19 27.47 68.60 1.88 47.08 16 4 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.24 -11.13 6.54 99.48 0.65 -10.48 16 7 C -0.53 -31.73 9.66 25.60 0.25 -31.48 16 8 H 0.04 2.89 7.99 -2.91 -0.02 2.87 16 9 C -0.01 -0.68 4.05 29.85 0.12 -0.56 16 10 C -0.58 -23.79 5.82 71.98 0.42 -23.37 16 11 S 2.61 94.69 5.11 -56.49 -0.29 94.40 16 12 O -0.96 -35.53 18.08 -127.65 -2.31 -37.84 16 13 O -0.97 -43.02 17.03 -120.72 -2.06 -45.08 16 14 N -1.04 -27.77 5.55 -175.82 -0.98 -28.75 16 15 C 0.57 18.03 7.50 86.70 0.65 18.68 16 16 O -0.52 -21.24 13.26 24.11 0.32 -20.92 16 17 C -0.21 -5.04 5.89 -20.01 -0.12 -5.16 16 18 C -0.04 -0.59 9.53 22.52 0.21 -0.38 16 19 C -0.16 -1.41 10.02 22.24 0.22 -1.19 16 20 C -0.03 -0.27 10.03 22.30 0.22 -0.05 16 21 C -0.22 -3.09 9.18 22.34 0.21 -2.88 16 22 C 0.17 3.98 6.69 22.84 0.15 4.13 16 23 O -0.29 -8.29 8.46 -68.71 -0.58 -8.87 16 24 C -0.02 -0.44 6.20 30.60 0.19 -0.25 16 25 C -0.18 -3.19 10.48 30.62 0.32 -2.87 16 26 C -0.17 -3.19 10.48 30.62 0.32 -2.86 16 27 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 28 H 0.04 2.12 7.20 -2.39 -0.02 2.10 16 29 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 30 H 0.13 5.50 7.19 -2.39 -0.02 5.48 16 31 H 0.15 5.30 8.14 -2.39 -0.02 5.28 16 32 H 0.45 7.42 6.82 -96.74 -0.66 6.76 16 33 H 0.16 1.25 6.40 -2.91 -0.02 1.23 16 34 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 35 H 0.17 0.14 8.06 -2.91 -0.02 0.12 16 36 H 0.16 1.32 5.52 -2.91 -0.02 1.31 16 37 H 0.16 1.72 5.33 -2.39 -0.01 1.70 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -89.88 359.85 0.29 -89.58 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.37 Total: 16.50 kcal Atomic # 6 Polarization: -50.56 SS G_CDS: 3.63 Total: -46.93 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -0.68 Total: -87.93 kcal Atomic # 8 Polarization: -108.08 SS G_CDS: -4.63 Total: -112.71 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.08 kcal Atomic # 16 Polarization: 94.69 SS G_CDS: -0.29 Total: 94.40 kcal Total: -89.88 0.29 -89.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805909314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.784 kcal (2) G-P(sol) polarization free energy of solvation -89.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds