Wall clock time and date at job start Tue Mar 31 2020 22:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81400 * 115.54656 * 2 1 4 4 O 1.42094 * 110.54462 * 282.70154 * 3 2 1 5 5 O 1.42102 * 110.53936 * 145.95664 * 3 2 1 6 6 N 1.65599 * 104.45207 * 34.33255 * 3 2 1 7 7 C 1.34775 * 120.00191 * 64.99511 * 6 3 2 8 8 O 1.21287 * 119.99749 * 0.02562 * 7 6 3 9 9 C 1.50696 * 119.99953 * 180.02562 * 7 6 3 10 10 C 1.50701 * 109.47164 * 180.02562 * 9 7 6 11 11 C 1.38305 * 119.92802 * 269.72913 * 10 9 7 12 12 C 1.38104 * 120.06697 * 179.72459 * 11 10 9 13 13 C 1.38874 * 119.92957 * 0.56590 * 12 11 10 14 14 O 1.35755 * 120.06909 * 179.68361 * 13 12 11 15 15 C 1.34824 * 117.00331 * 174.48877 * 14 13 12 16 16 H 1.08004 * 119.99949 * 5.05598 * 15 14 13 17 17 C 1.38649 * 120.00499 * 185.05732 * 15 14 13 18 18 N 1.31556 * 119.99644 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00330 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47048 * 59.99840 * 19 17 15 21 21 H 1.48503 * 109.47169 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46946 * 299.99970 * 19 17 15 23 23 C 1.38882 * 119.86345 * 359.70759 * 13 12 11 24 24 C 1.38093 * 119.92877 * 359.97438 * 23 13 12 25 25 C 1.52996 * 117.51937 * 145.69930 * 2 1 3 26 26 C 1.52998 * 60.00176 * 107.48258 * 25 2 1 27 27 H 1.08997 * 109.46754 * 85.58789 * 1 2 3 28 28 H 1.09004 * 109.46967 * 205.58178 * 1 2 3 29 29 H 1.08996 * 109.47240 * 325.57971 * 1 2 3 30 30 H 0.96998 * 119.99506 * 245.00008 * 6 3 2 31 31 H 1.09001 * 109.47323 * 299.99749 * 9 7 6 32 32 H 1.09000 * 109.47331 * 60.00385 * 9 7 6 33 33 H 1.07999 * 119.96791 * 359.97438 * 11 10 9 34 34 H 1.08005 * 120.03564 * 180.26998 * 12 11 10 35 35 H 0.97002 * 119.99705 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.03089 * 179.97438 * 23 13 12 37 37 H 1.07998 * 119.96953 * 179.97438 * 24 23 13 38 38 H 1.09002 * 117.50399 * 214.97525 * 25 2 1 39 39 H 1.09011 * 117.50217 * 359.97438 * 25 2 1 40 40 H 1.09002 * 117.49923 * 252.51664 * 26 25 2 41 41 H 1.08996 * 117.50069 * 107.48755 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.3123 1.6367 0.0000 4 8 2.2634 2.2127 -1.2980 5 8 3.5222 1.6110 0.7449 6 7 1.2958 2.5806 0.9044 7 6 1.1226 2.3203 2.2154 8 8 1.7117 1.3949 2.7329 9 6 0.1971 3.1789 3.0382 10 6 0.1821 2.6813 4.4606 11 6 -0.7415 1.7275 4.8482 12 6 -0.7541 1.2652 6.1495 13 6 0.1540 1.7677 7.0722 14 8 0.1399 1.3200 8.3537 15 6 1.1190 1.7631 9.1678 16 1 1.8198 2.5055 8.8152 17 6 1.2264 1.2658 10.4576 18 7 0.3726 0.3619 10.8872 19 14 2.5835 1.8792 11.5852 20 1 2.4432 3.3452 11.7765 21 1 2.4806 1.1969 12.9002 22 1 3.9049 1.5838 10.9756 23 6 1.0765 2.7296 6.6813 24 6 1.0884 3.1829 5.3770 25 6 2.2370 -1.1209 0.7646 26 6 2.2366 -1.1207 -0.7653 27 1 -0.3633 0.0791 -1.0246 28 1 -0.3633 -0.9270 0.4438 29 1 -0.3633 0.8477 0.5809 30 1 0.8250 3.3208 0.4906 31 1 0.5460 4.2114 3.0187 32 1 -0.8099 3.1278 2.6244 33 1 -1.4508 1.3408 4.1315 34 1 -1.4727 0.5172 6.4505 35 1 0.4475 0.0142 11.7897 36 1 1.7837 3.1225 7.3967 37 1 1.8051 3.9311 5.0724 38 1 3.1721 -0.8750 1.2678 39 1 1.6121 -1.8585 1.2683 40 1 1.6113 -1.8583 -1.2685 41 1 3.1714 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806029085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:35 Heat of formation + Delta-G solvation = -108.337913 kcal Electronic energy + Delta-G solvation = -26955.867106 eV Core-core repulsion = 22928.886462 eV Total energy + Delta-G solvation = -4026.980645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35735 -40.51680 -38.75703 -38.37819 -38.18506 -37.31442 -35.54615 -34.39524 -32.81531 -31.75255 -29.76883 -28.35430 -27.06521 -23.64010 -23.61236 -23.48442 -23.24030 -21.78741 -20.49252 -19.83166 -19.06793 -18.74665 -18.47435 -17.97921 -16.76125 -16.54548 -16.44751 -16.09861 -15.94869 -15.71586 -15.51879 -15.32362 -14.93803 -14.65995 -14.41366 -14.24931 -14.15347 -13.84140 -13.60782 -13.54639 -13.45008 -13.32082 -12.96683 -12.86411 -12.61961 -12.48103 -12.31098 -12.24275 -12.21844 -12.14055 -11.90507 -11.49537 -11.28772 -11.19998 -11.16146 -10.77173 -9.73638 -8.89933 -8.47324 -6.15170 -1.03224 0.64589 0.66697 1.14860 1.33919 1.34735 1.45261 1.50058 2.09084 2.17721 2.61135 2.80604 3.08400 3.13069 3.39125 3.53672 3.57672 3.66981 3.73398 3.84289 4.07660 4.17293 4.23583 4.44318 4.49400 4.54052 4.61849 4.63502 4.73607 4.75134 4.83175 4.84199 4.99322 5.10788 5.12111 5.15577 5.32371 5.57489 5.73921 5.75877 5.78363 6.03736 6.26601 6.59770 6.97632 7.78971 8.75808 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.002532 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.800274 B =11055.507689 C =11125.789831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.639 4.639 3 S 2.627 3.373 4 O -0.965 6.965 5 O -0.976 6.976 6 N -1.039 6.039 7 C 0.532 3.468 8 O -0.515 6.515 9 C -0.079 4.079 10 C -0.153 4.153 11 C -0.050 4.050 12 C -0.206 4.206 13 C 0.113 3.887 14 O -0.233 6.233 15 C -0.415 4.415 16 H 0.099 0.901 17 C -0.022 4.022 18 N -0.921 5.921 19 Si 1.017 2.983 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.261 1.261 23 C -0.248 4.248 24 C -0.061 4.061 25 C -0.122 4.122 26 C -0.112 4.112 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.451 0.549 31 H 0.139 0.861 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.113 0.887 35 H 0.273 0.727 36 H 0.114 0.886 37 H 0.136 0.864 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 3.525 -26.689 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.732 4.732 3 S 2.724 3.276 4 O -0.955 6.955 5 O -0.966 6.966 6 N -0.807 5.807 7 C 0.320 3.680 8 O -0.387 6.387 9 C -0.120 4.120 10 C -0.154 4.154 11 C -0.068 4.068 12 C -0.226 4.226 13 C 0.063 3.937 14 O -0.140 6.140 15 C -0.491 4.491 16 H 0.116 0.884 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.836 3.164 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.185 1.185 23 C -0.267 4.267 24 C -0.079 4.079 25 C -0.160 4.160 26 C -0.151 4.151 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.292 0.708 31 H 0.156 0.844 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.154 0.846 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.161 0.839 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.976 2.918 -26.400 26.579 hybrid contribution 0.057 0.018 1.129 1.131 sum -0.919 2.935 -25.271 25.458 Atomic orbital electron populations 1.21240 0.85610 1.04668 1.04398 1.31703 1.08902 1.13143 1.19501 1.04397 0.73890 0.76603 0.72689 1.93598 1.86704 1.75952 1.39243 1.93608 1.44235 1.86710 1.72050 1.54769 1.61028 1.45365 1.19539 1.21355 0.81246 0.84569 0.80821 1.90932 1.46212 1.30952 1.70565 1.20738 1.01755 1.00242 0.89223 1.19226 0.99191 1.01712 0.95277 1.20929 0.97802 0.94445 0.93619 1.20474 1.02582 1.05537 0.93958 1.19993 0.95158 0.93262 0.85260 1.83931 1.48439 1.64450 1.17144 1.21761 1.08825 1.24248 0.94242 0.88377 1.26559 1.01076 0.96110 0.98208 1.70173 1.37682 1.29221 1.18807 0.84681 0.76430 0.78915 0.76398 1.17967 1.19424 1.18538 1.21223 1.03590 1.03154 0.98714 1.20972 0.97098 0.98307 0.91499 1.23019 1.01376 0.96234 0.95398 1.23204 1.01285 0.96021 0.94607 0.89007 0.90103 0.90834 0.70823 0.84355 0.82844 0.82557 0.86884 0.91825 0.86851 0.84595 0.88494 0.85986 0.83886 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 9.84 71.98 0.71 -0.37 16 2 C -0.64 -10.19 2.30 -10.79 -0.02 -10.22 16 3 S 2.63 54.19 5.29 -56.49 -0.30 53.89 16 4 O -0.96 -21.94 18.08 -127.65 -2.31 -24.25 16 5 O -0.98 -29.74 16.33 -120.71 -1.97 -31.71 16 6 N -1.04 -15.03 4.63 -173.53 -0.80 -15.83 16 7 C 0.53 10.70 6.83 87.66 0.60 11.30 16 8 O -0.51 -15.70 14.82 13.34 0.20 -15.50 16 9 C -0.08 -1.20 5.83 29.10 0.17 -1.03 16 10 C -0.15 -4.29 4.38 -19.83 -0.09 -4.37 16 11 C -0.05 -1.54 9.69 22.25 0.22 -1.32 16 12 C -0.21 -8.65 9.99 22.39 0.22 -8.43 16 13 C 0.11 5.74 6.65 22.58 0.15 5.89 16 14 O -0.23 -14.30 9.76 -22.73 -0.22 -14.52 16 15 C -0.41 -24.77 9.49 67.92 0.64 -24.13 16 16 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 17 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 18 N -0.92 -57.35 13.67 21.61 0.30 -57.06 16 19 Si 1.02 43.87 29.55 68.60 2.03 45.90 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 23 C -0.25 -11.06 9.17 22.39 0.21 -10.85 16 24 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 25 C -0.12 -2.19 9.81 30.59 0.30 -1.89 16 26 C -0.11 -1.39 10.02 30.59 0.31 -1.08 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 0.83 7.90 -2.38 -0.02 0.82 16 29 H 0.07 0.65 6.38 -2.39 -0.02 0.63 16 30 H 0.45 2.40 8.79 -96.75 -0.85 1.55 16 31 H 0.14 1.31 8.08 -2.39 -0.02 1.29 16 32 H 0.15 0.95 8.08 -2.39 -0.02 0.93 16 33 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 34 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.11 5.23 5.64 -2.91 -0.02 5.21 16 37 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 38 H 0.10 2.20 7.66 -2.39 -0.02 2.18 16 39 H 0.12 1.95 8.05 -2.38 -0.02 1.93 16 40 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -90.26 365.32 1.24 -89.02 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.23 Total: 19.26 kcal Atomic # 6 Polarization: -53.28 SS G_CDS: 4.09 Total: -49.19 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -0.51 Total: -72.89 kcal Atomic # 8 Polarization: -81.69 SS G_CDS: -4.30 Total: -85.99 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 54.19 SS G_CDS: -0.30 Total: 53.89 kcal Total: -90.26 1.24 -89.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806029085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.315 kcal (2) G-P(sol) polarization free energy of solvation -90.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds