Wall clock time and date at job start Tue Mar 31 2020 22:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93241 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56847 * 12 11 10 14 14 C 1.38274 * 120.13742 * 359.68073 * 13 12 11 15 15 C 1.50705 * 119.96893 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46946 * 270.02676 * 15 14 13 17 17 O 1.21279 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99612 * 179.97438 * 16 15 14 19 19 S 1.65605 * 119.99987 * 179.97438 * 18 16 15 20 20 O 1.42097 * 104.27437 * 181.07042 * 19 18 16 21 21 O 1.42099 * 104.27646 * 308.93020 * 19 18 16 22 22 C 1.81404 * 104.44640 * 65.00144 * 19 18 16 23 23 C 1.52991 * 109.47082 * 179.97438 * 22 19 18 24 24 C 1.53002 * 117.50199 * 243.74531 * 23 22 19 25 25 C 1.53002 * 117.50114 * 175.08421 * 23 22 19 26 26 C 1.38123 * 120.07195 * 0.04687 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.96946 * 180.27290 * 12 11 10 30 30 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 31 31 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 32 32 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 33 33 H 0.97004 * 120.00106 * 359.97438 * 18 16 15 34 34 H 1.09002 * 109.47162 * 300.00359 * 22 19 18 35 35 H 1.08998 * 109.47173 * 59.99584 * 22 19 18 36 36 H 1.09002 * 115.55294 * 29.41574 * 23 22 19 37 37 H 1.09000 * 117.49419 * 0.02562 * 24 23 22 38 38 H 1.09006 * 117.50124 * 145.01693 * 24 23 22 39 39 H 1.09000 * 117.49939 * 214.97802 * 25 23 22 40 40 H 1.08994 * 117.49693 * 0.02562 * 25 23 22 41 41 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8530 -4.7989 -0.1986 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 6 8.1003 -3.8591 0.9033 17 8 7.3954 -3.8605 1.8902 18 7 9.4398 -3.9345 1.0318 19 16 10.1232 -4.0285 2.5373 20 8 11.5212 -4.0665 2.2856 21 8 9.5372 -2.9519 3.2560 22 6 9.5514 -5.6193 3.1953 23 6 10.1230 -5.8255 4.5994 24 6 11.0828 -6.9990 4.8062 25 6 9.6630 -7.0616 5.3750 26 6 5.3550 -2.4724 -0.2267 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2703 -5.7081 -0.1879 30 1 5.7198 -5.8205 -0.4034 31 1 7.7494 -4.6563 -1.0449 32 1 7.8421 -2.8801 -0.9753 33 1 10.0035 -3.9337 0.2424 34 1 8.4624 -5.6229 3.2418 35 1 9.8898 -6.4248 2.5437 36 1 10.3110 -4.9153 5.1688 37 1 11.3073 -7.6238 3.9417 38 1 11.9021 -6.8609 5.5118 39 1 9.5488 -6.9646 6.4546 40 1 8.9535 -7.7280 4.8847 41 1 5.9409 -1.5652 -0.2384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810582233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:57 Heat of formation + Delta-G solvation = -82.848218 kcal Electronic energy + Delta-G solvation = -26456.022684 eV Core-core repulsion = 22430.147356 eV Total energy + Delta-G solvation = -4025.875329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41582 -39.05691 -38.00043 -37.43201 -36.73359 -36.32441 -34.69374 -32.47673 -32.20051 -29.77246 -29.51055 -27.46042 -25.20479 -22.86726 -22.68779 -21.74607 -21.56914 -20.55384 -19.87892 -18.36711 -17.82657 -17.72103 -17.14394 -17.05359 -16.06212 -15.64286 -15.29623 -15.22775 -14.89940 -14.73051 -14.51550 -14.02857 -13.80313 -13.74696 -13.58226 -13.03203 -12.63615 -12.57052 -12.45921 -12.33298 -12.30989 -12.18592 -11.98573 -11.90226 -11.75756 -11.38781 -11.16309 -10.92923 -10.85179 -10.76420 -10.73923 -10.40913 -10.34569 -10.15527 -9.40770 -8.87363 -8.22438 -7.40218 -6.41120 -4.07965 -0.28005 1.82156 1.97749 2.19553 2.26129 3.15990 3.23597 3.26756 3.32095 3.43157 3.82368 3.90960 4.17802 4.25141 4.36744 4.43922 4.51181 4.52811 4.58630 4.76624 4.82117 4.95551 5.06110 5.08702 5.18963 5.20961 5.42515 5.42901 5.58904 5.62246 5.64981 5.75650 6.07486 6.20198 6.29425 6.48631 6.73931 7.02686 7.14257 7.27518 7.33226 7.56646 7.79211 8.03441 8.94214 9.56256 10.66475 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016965 B = 0.002554 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.047535 B =10960.561285 C =11299.912205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.161 3.839 11 C -0.214 4.214 12 C -0.076 4.076 13 C -0.190 4.190 14 C -0.045 4.045 15 C -0.093 4.093 16 C 0.532 3.468 17 O -0.473 6.473 18 N -1.059 6.059 19 S 2.595 3.405 20 O -0.947 6.947 21 O -0.924 6.924 22 C -0.587 4.587 23 C -0.157 4.157 24 C -0.172 4.172 25 C -0.159 4.159 26 C -0.173 4.173 27 H 0.279 0.721 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.433 0.567 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.174 -14.959 2.252 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.109 3.891 11 C -0.234 4.234 12 C -0.094 4.094 13 C -0.209 4.209 14 C -0.046 4.046 15 C -0.135 4.135 16 C 0.318 3.682 17 O -0.342 6.342 18 N -0.825 5.825 19 S 2.690 3.310 20 O -0.937 6.937 21 O -0.914 6.914 22 C -0.717 4.717 23 C -0.176 4.176 24 C -0.209 4.209 25 C -0.197 4.197 26 C -0.192 4.192 27 H 0.090 0.910 28 H 0.151 0.849 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.269 0.731 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.135 0.865 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 22.038 -13.906 3.386 26.278 hybrid contribution -0.011 0.085 -0.536 0.543 sum 22.027 -13.821 2.849 26.159 Atomic orbital electron populations 1.69646 1.05568 1.28497 1.48032 1.24461 0.95026 0.98842 0.95640 0.86189 0.80463 0.81414 0.78922 1.19888 1.20765 1.18261 1.20763 0.76844 0.96637 1.52247 0.87614 1.83574 1.22640 1.25609 1.80346 1.19010 0.91505 0.85599 0.93030 1.21327 1.01251 0.91950 1.08837 1.20737 0.94109 0.96767 0.97768 1.20401 0.93984 0.96277 1.10196 1.18629 0.91670 0.93248 1.01080 1.20715 0.94153 1.05691 0.92931 1.20939 0.80228 0.73257 0.93749 1.90927 1.60087 1.43602 1.39581 1.55228 1.16477 1.81365 1.29383 1.05735 0.74013 0.77548 0.73746 1.93635 1.29049 1.87592 1.83459 1.93686 1.77912 1.48802 1.70998 1.30081 1.13487 1.22661 1.05499 1.21642 1.06134 0.95691 0.94173 1.23184 0.93740 1.00018 1.03928 1.23024 0.97656 0.98784 1.00260 1.19981 0.92127 0.97050 1.10074 0.91049 0.84906 0.87091 0.87620 0.87121 0.87058 0.73085 0.83313 0.84823 0.86535 0.88103 0.87843 0.87878 0.88050 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.52 13.96 55.48 0.77 -24.75 16 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.90 21.93 28.62 -169.99 -4.86 17.06 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.39 -11.04 9.95 30.89 0.31 -10.73 16 8 H 0.11 3.04 5.44 -52.49 -0.29 2.76 16 9 O -0.22 -5.77 8.59 0.05 0.00 -5.77 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 C -0.21 -4.60 9.17 -39.40 -0.36 -4.97 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -2.97 9.70 -39.54 -0.38 -3.35 16 14 C -0.05 -0.72 4.37 -104.65 -0.46 -1.18 16 15 C -0.09 -0.96 5.83 -29.03 -0.17 -1.13 16 16 C 0.53 6.21 7.56 -10.99 -0.08 6.12 16 17 O -0.47 -7.64 14.14 -11.57 -0.16 -7.80 16 18 N -1.06 -8.77 5.60 31.22 0.17 -8.59 16 19 S 2.59 26.74 5.06 -107.50 -0.54 26.20 16 20 O -0.95 -10.88 18.08 -57.54 -1.04 -11.92 16 21 O -0.92 -14.17 17.04 -64.79 -1.10 -15.27 16 22 C -0.59 -4.68 6.17 37.15 0.23 -4.45 16 23 C -0.16 -1.27 5.74 -90.62 -0.52 -1.79 16 24 C -0.17 -1.08 10.18 -26.69 -0.27 -1.35 16 25 C -0.16 -1.08 10.25 -26.69 -0.27 -1.35 16 26 C -0.17 -3.39 9.65 -39.39 -0.38 -3.77 16 27 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.13 2.99 5.64 -52.48 -0.30 2.70 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.11 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.11 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.43 1.82 8.79 -34.48 -0.30 1.51 16 34 H 0.15 1.32 7.19 -51.92 -0.37 0.94 16 35 H 0.13 0.66 7.87 -51.92 -0.41 0.25 16 36 H 0.12 0.94 8.06 -51.93 -0.42 0.52 16 37 H 0.10 0.52 8.03 -51.93 -0.42 0.11 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -37.59 367.24 -9.36 -46.95 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.01 Total: 2.87 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -3.12 Total: -24.52 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.95 Total: -33.34 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -2.31 Total: -40.76 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.86 Total: 17.06 kcal Atomic # 16 Polarization: 26.74 SS G_CDS: -0.54 Total: 26.20 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.59 -9.36 -46.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810582233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.896 kcal (2) G-P(sol) polarization free energy of solvation -37.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds