Wall clock time and date at job start Tue Mar 31 2020 22:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81402 * 115.54917 * 2 1 4 4 O 1.42097 * 110.54372 * 282.70572 * 3 2 1 5 5 O 1.42099 * 110.54109 * 145.95556 * 3 2 1 6 6 N 1.65599 * 104.44945 * 34.33190 * 3 2 1 7 7 C 1.34783 * 120.00040 * 64.99639 * 6 3 2 8 8 O 1.21284 * 119.99976 * 0.02562 * 7 6 3 9 9 C 1.50699 * 120.00059 * 179.97438 * 7 6 3 10 10 C 1.50699 * 109.47151 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96224 * 270.02423 * 10 9 7 12 12 C 1.38279 * 120.13490 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.06774 * 359.77134 * 12 11 10 14 14 C 1.38852 * 119.93464 * 0.50144 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.74702 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46908 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00300 * 20 18 16 24 24 C 1.38073 * 119.96539 * 89.99818 * 10 9 7 25 25 C 1.53001 * 117.52003 * 145.70451 * 2 1 3 26 26 C 1.52996 * 60.00129 * 107.47917 * 25 2 1 27 27 H 1.08999 * 109.46958 * 85.57859 * 1 2 3 28 28 H 1.09004 * 109.46962 * 205.57989 * 1 2 3 29 29 H 1.08998 * 109.46920 * 325.57963 * 1 2 3 30 30 H 0.97001 * 120.00149 * 245.00119 * 6 3 2 31 31 H 1.09004 * 109.46756 * 60.00007 * 9 7 6 32 32 H 1.08998 * 109.46908 * 300.00650 * 9 7 6 33 33 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.96467 * 180.02562 * 12 11 10 35 35 H 1.08006 * 120.03757 * 180.27571 * 13 12 11 36 36 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 37 37 H 1.07996 * 120.03547 * 0.04988 * 24 10 9 38 38 H 1.09000 * 117.50276 * 214.97239 * 25 2 1 39 39 H 1.09004 * 117.49811 * 359.97438 * 25 2 1 40 40 H 1.09001 * 117.50332 * 252.50978 * 26 25 2 41 41 H 1.09002 * 117.49843 * 107.49076 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.3124 1.6366 0.0000 4 8 2.2634 2.2127 -1.2980 5 8 3.5222 1.6109 0.7449 6 7 1.2958 2.5806 0.9044 7 6 1.1227 2.3202 2.2155 8 8 1.7117 1.3949 2.7329 9 6 0.1980 3.1795 3.0386 10 6 0.1828 2.6817 4.4609 11 6 -0.7373 1.7240 4.8479 12 6 -0.7541 1.2643 6.1519 13 6 0.1515 1.7569 7.0710 14 6 1.0727 2.7224 6.6872 15 8 1.9607 3.2122 7.5896 16 6 1.8184 2.8102 8.8687 17 1 1.0771 2.0667 9.1217 18 6 2.6238 3.3514 9.8591 19 7 3.5264 4.2574 9.5510 20 14 2.4261 2.7949 11.6313 21 1 1.3496 1.7752 11.7128 22 1 3.7024 2.2059 12.1104 23 1 2.0696 3.9606 12.4795 24 6 1.0876 3.1815 5.3763 25 6 2.2370 -1.1210 0.7646 26 6 2.2365 -1.1207 -0.7654 27 1 -0.3633 0.0792 -1.0246 28 1 -0.3633 -0.9270 0.4437 29 1 -0.3633 0.8477 0.5809 30 1 0.8250 3.3208 0.4906 31 1 -0.8092 3.1293 2.6248 32 1 0.5478 4.2117 3.0190 33 1 -1.4441 1.3346 4.1300 34 1 -1.4734 0.5162 6.4509 35 1 0.1409 1.3942 8.0883 36 1 4.0896 4.6362 10.2439 37 1 1.8055 3.9294 5.0737 38 1 3.1721 -0.8751 1.2676 39 1 1.6120 -1.8586 1.2681 40 1 1.6112 -1.8582 -1.2687 41 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810878448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:38 Heat of formation + Delta-G solvation = -108.285762 kcal Electronic energy + Delta-G solvation = -27060.686303 eV Core-core repulsion = 23033.707920 eV Total energy + Delta-G solvation = -4026.978383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42089 -40.51689 -38.76149 -38.39026 -38.18134 -37.33532 -35.59972 -34.33700 -33.43938 -30.88275 -29.76750 -28.65551 -27.26108 -23.78452 -23.59856 -23.29127 -23.15992 -22.04027 -20.54773 -19.55623 -19.06817 -18.60157 -18.52839 -18.00390 -16.87802 -16.68114 -16.53159 -16.13060 -15.97673 -15.80332 -15.57671 -15.36110 -14.94381 -14.66647 -14.38361 -14.23339 -14.09106 -13.77485 -13.60134 -13.55602 -13.45322 -13.33948 -12.98847 -12.89072 -12.61339 -12.50122 -12.36808 -12.23143 -12.20360 -12.07617 -11.93850 -11.51691 -11.32663 -11.23387 -11.17129 -10.80454 -9.63913 -8.95871 -8.46449 -6.14971 -1.05667 0.51364 0.78330 1.07972 1.31679 1.34200 1.43446 1.53005 2.08684 2.17851 2.60294 2.81117 3.06954 3.12734 3.35514 3.44567 3.53981 3.66094 3.71612 3.81663 4.10953 4.13443 4.34035 4.43470 4.44714 4.54795 4.59979 4.63843 4.67489 4.76458 4.77249 4.84578 4.99924 5.08060 5.13098 5.14195 5.32119 5.66792 5.69059 5.74228 5.77501 6.04031 6.27292 6.52223 6.98325 7.80959 8.77453 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019826 B = 0.002634 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.924377 B =10627.564441 C =10872.581670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.637 4.637 3 S 2.622 3.378 4 O -0.964 6.964 5 O -0.979 6.979 6 N -1.039 6.039 7 C 0.537 3.463 8 O -0.513 6.513 9 C -0.093 4.093 10 C -0.033 4.033 11 C -0.172 4.172 12 C -0.074 4.074 13 C -0.245 4.245 14 C 0.109 3.891 15 O -0.237 6.237 16 C -0.412 4.412 17 H 0.101 0.899 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.020 2.980 21 H -0.250 1.250 22 H -0.270 1.270 23 H -0.267 1.267 24 C -0.194 4.194 25 C -0.121 4.121 26 C -0.112 4.112 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.451 0.549 31 H 0.167 0.833 32 H 0.131 0.869 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.115 0.885 36 H 0.272 0.728 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.128 0.872 40 H 0.147 0.853 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.205 -8.940 -22.303 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.731 4.731 3 S 2.720 3.280 4 O -0.955 6.955 5 O -0.969 6.969 6 N -0.807 5.807 7 C 0.324 3.676 8 O -0.384 6.384 9 C -0.133 4.133 10 C -0.034 4.034 11 C -0.190 4.190 12 C -0.091 4.091 13 C -0.264 4.264 14 C 0.059 3.941 15 O -0.145 6.145 16 C -0.488 4.488 17 H 0.119 0.881 18 C -0.223 4.223 19 N -0.562 5.562 20 Si 0.839 3.161 21 H -0.174 1.174 22 H -0.195 1.195 23 H -0.191 1.191 24 C -0.214 4.214 25 C -0.159 4.159 26 C -0.150 4.150 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.292 0.708 31 H 0.185 0.815 32 H 0.149 0.851 33 H 0.176 0.824 34 H 0.164 0.836 35 H 0.133 0.867 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.146 0.854 40 H 0.165 0.835 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.628 -8.998 -22.251 26.670 hybrid contribution 0.097 0.239 1.177 1.205 sum -11.531 -8.759 -21.074 25.570 Atomic orbital electron populations 1.21251 0.85275 1.04836 1.04472 1.31658 1.09067 1.12585 1.19746 1.04540 0.73891 0.76915 0.72657 1.93597 1.86670 1.76124 1.39066 1.93618 1.44440 1.86808 1.72066 1.54751 1.61055 1.45470 1.19374 1.21060 0.81146 0.84448 0.80912 1.90929 1.45993 1.31032 1.70476 1.20906 1.02629 1.00339 0.89459 1.19169 0.94337 0.96140 0.93711 1.21027 1.01772 0.99757 0.96462 1.21156 0.96630 0.98187 0.93175 1.21316 1.00930 1.02556 1.01598 1.19904 0.89820 0.93405 0.90931 1.83939 1.47973 1.64323 1.18221 1.21862 1.21929 1.24148 0.80888 0.88137 1.26619 0.94900 0.95899 1.04854 1.70199 1.21742 1.28452 1.35766 0.84513 0.79046 0.78621 0.73888 1.17356 1.19531 1.19149 1.20287 1.03726 1.05806 0.91547 1.23043 1.01336 0.96126 0.95389 1.23223 1.01239 0.95912 0.94658 0.88994 0.89622 0.90895 0.70828 0.81540 0.85119 0.82433 0.83579 0.86717 0.91915 0.87795 0.88796 0.85430 0.83534 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.84 71.98 0.71 -0.30 16 2 C -0.64 -10.31 2.30 -10.79 -0.02 -10.33 16 3 S 2.62 59.23 5.29 -56.49 -0.30 58.93 16 4 O -0.96 -23.65 18.08 -127.65 -2.31 -25.96 16 5 O -0.98 -32.79 16.33 -120.72 -1.97 -34.76 16 6 N -1.04 -17.65 4.63 -173.52 -0.80 -18.45 16 7 C 0.54 12.36 6.83 87.66 0.60 12.96 16 8 O -0.51 -16.92 14.82 13.34 0.20 -16.72 16 9 C -0.09 -1.73 5.83 29.10 0.17 -1.56 16 10 C -0.03 -1.02 4.37 -19.88 -0.09 -1.11 16 11 C -0.17 -4.84 9.70 22.30 0.22 -4.62 16 12 C -0.07 -2.44 10.04 22.25 0.22 -2.22 16 13 C -0.24 -10.84 9.17 22.39 0.21 -10.63 16 14 C 0.11 5.62 6.65 22.58 0.15 5.77 16 15 O -0.24 -14.86 9.76 -22.74 -0.22 -15.08 16 16 C -0.41 -24.76 9.49 67.92 0.64 -24.12 16 17 H 0.10 5.55 5.21 -2.91 -0.02 5.53 16 18 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 19 N -0.92 -58.34 13.67 21.61 0.30 -58.04 16 20 Si 1.02 43.98 29.55 68.60 2.03 46.01 16 21 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 C -0.19 -8.42 9.65 22.39 0.22 -8.21 16 25 C -0.12 -2.14 9.81 30.59 0.30 -1.84 16 26 C -0.11 -1.37 10.02 30.59 0.31 -1.07 16 27 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.74 7.90 -2.39 -0.02 0.72 16 29 H 0.07 0.61 6.38 -2.39 -0.02 0.60 16 30 H 0.45 3.53 8.79 -96.74 -0.85 2.68 16 31 H 0.17 1.25 8.09 -2.38 -0.02 1.23 16 32 H 0.13 2.03 8.08 -2.39 -0.02 2.01 16 33 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 36 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.09 2.18 7.66 -2.39 -0.02 2.16 16 39 H 0.13 1.85 8.05 -2.39 -0.02 1.83 16 40 H 0.15 0.92 8.14 -2.39 -0.02 0.91 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -92.95 365.33 1.24 -91.71 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.23 Total: 20.69 kcal Atomic # 6 Polarization: -52.41 SS G_CDS: 4.09 Total: -48.32 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -0.51 Total: -76.50 kcal Atomic # 8 Polarization: -88.22 SS G_CDS: -4.30 Total: -92.53 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 59.23 SS G_CDS: -0.30 Total: 58.93 kcal Total: -92.95 1.24 -91.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810878448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.576 kcal (2) G-P(sol) polarization free energy of solvation -92.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds