Wall clock time and date at job start Tue Mar 31 2020 21:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47098 * 179.97438 * 9 7 2 11 11 O 1.42107 * 110.54111 * 291.62282 * 10 9 7 12 12 O 1.42102 * 110.54223 * 68.37292 * 10 9 7 13 13 N 1.65600 * 104.45074 * 179.97438 * 10 9 7 14 14 C 1.34775 * 119.99844 * 64.99364 * 13 10 9 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 10 16 16 C 1.50698 * 119.99913 * 179.97438 * 14 13 10 17 17 C 1.53002 * 109.47303 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.33271 * 55.00241 * 17 16 14 19 19 O 1.42720 * 109.34100 * 295.33137 * 17 16 14 20 20 C 1.43160 * 113.17289 * 187.88311 * 19 17 16 21 21 C 1.52974 * 108.32573 * 70.93816 * 20 19 17 22 22 C 1.50743 * 109.75000 * 310.72865 * 21 20 19 23 23 C 1.38599 * 118.75686 * 196.86811 * 22 21 20 24 24 C 1.38068 * 120.27535 * 180.24192 * 23 22 21 25 25 C 1.38252 * 119.86140 * 0.02562 * 24 23 22 26 26 C 1.38051 * 119.89984 * 359.90394 * 25 24 23 27 27 C 1.37903 * 121.35780 * 16.95863 * 22 21 20 28 28 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 31 31 H 0.96993 * 120.00181 * 245.00479 * 13 10 9 32 32 H 1.08994 * 109.47744 * 300.00807 * 16 14 13 33 33 H 1.09000 * 109.47163 * 60.01025 * 16 14 13 34 34 H 1.09001 * 109.73699 * 311.27306 * 20 19 17 35 35 H 1.09004 * 109.67696 * 190.57525 * 20 19 17 36 36 H 1.09001 * 109.42008 * 190.64122 * 21 20 19 37 37 H 1.09002 * 109.37780 * 70.78661 * 21 20 19 38 38 H 1.07997 * 119.86233 * 0.22885 * 23 22 21 39 39 H 1.08006 * 120.06883 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.05066 * 179.91175 * 25 24 23 41 41 H 1.08006 * 119.85049 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.1264 -3.9384 -1.2365 12 8 3.1265 -3.9384 1.2375 13 7 1.4793 -5.2342 0.0013 14 6 0.6882 -5.5031 -1.0562 15 8 0.6726 -4.7522 -2.0085 16 6 -0.1762 -6.7375 -1.0558 17 6 -0.9684 -6.8059 -2.3630 18 1 -0.2788 -6.7569 -3.2058 19 8 -1.8715 -5.7027 -2.4267 20 6 -2.7805 -5.7817 -3.5299 21 6 -3.7813 -6.9040 -3.2490 22 6 -3.0442 -8.1519 -2.8344 23 6 -3.7120 -9.3657 -2.8763 24 6 -3.0686 -10.5275 -2.4988 25 6 -1.7529 -10.4797 -2.0767 26 6 -1.0867 -9.2714 -2.0360 27 6 -1.7308 -8.1042 -2.4170 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 0.8903 30 1 0.6246 -2.5571 -0.8897 31 1 1.4919 -5.8348 0.7627 32 1 0.4538 -7.6224 -0.9665 33 1 -0.8672 -6.6970 -0.2137 34 1 -2.2306 -6.0018 -4.4449 35 1 -3.3113 -4.8356 -3.6366 36 1 -4.3602 -7.1073 -4.1500 37 1 -4.4536 -6.5970 -2.4478 38 1 -4.7399 -9.4029 -3.2055 39 1 -3.5920 -11.4716 -2.5331 40 1 -1.2471 -11.3865 -1.7793 41 1 -0.0587 -9.2350 -1.7066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:00 Heat of formation + Delta-G solvation = -136.221942 kcal Electronic energy + Delta-G solvation = -27268.702778 eV Core-core repulsion = 23240.512991 eV Total energy + Delta-G solvation = -4028.189787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77971 -39.48962 -37.59819 -36.20015 -35.13005 -34.05972 -33.92479 -33.30455 -32.40188 -30.24418 -29.01196 -28.69098 -24.78071 -23.96939 -23.49331 -22.47031 -20.85749 -20.23878 -19.13454 -17.85987 -17.36669 -16.95420 -16.59019 -16.29860 -16.02684 -15.68803 -15.43791 -14.85164 -14.67095 -14.57867 -14.40539 -14.16554 -13.86066 -13.59961 -13.41410 -12.75210 -12.59187 -12.51845 -12.36019 -12.10694 -11.97582 -11.84505 -11.58831 -11.43267 -11.25719 -11.16582 -11.14807 -10.85573 -10.74126 -10.62348 -10.41740 -9.97247 -9.78009 -9.64832 -9.11441 -9.03873 -8.85689 -8.66023 -6.28238 -4.39557 1.01397 1.08531 1.11144 2.48297 3.20631 3.27210 3.29410 3.34112 3.43022 3.67882 4.19684 4.28777 4.38060 4.52002 4.58176 4.63439 4.73831 4.81795 4.86811 5.03657 5.05738 5.09897 5.12541 5.22083 5.26370 5.29704 5.36145 5.45078 5.58850 5.70268 5.70827 5.75866 5.85731 6.15762 6.22186 6.31560 6.64556 6.69841 6.83657 7.04230 7.12201 7.45734 7.78253 7.86748 8.61428 9.27311 10.83390 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018394 B = 0.003002 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.840674 B = 9325.461217 C =10471.132306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.069 0.931 9 C -0.403 4.403 10 S 2.554 3.446 11 O -0.954 6.954 12 O -0.971 6.971 13 N -1.063 6.063 14 C 0.533 3.467 15 O -0.473 6.473 16 C -0.136 4.136 17 C 0.142 3.858 18 H 0.084 0.916 19 O -0.353 6.353 20 C 0.060 3.940 21 C -0.118 4.118 22 C -0.068 4.068 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.111 4.111 27 C -0.112 4.112 28 H 0.269 0.731 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.424 0.576 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.562 -21.057 -4.044 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.087 0.913 9 C -0.540 4.540 10 S 2.656 3.344 11 O -0.945 6.945 12 O -0.962 6.962 13 N -0.823 5.823 14 C 0.318 3.682 15 O -0.343 6.343 16 C -0.177 4.177 17 C 0.084 3.916 18 H 0.102 0.898 19 O -0.271 6.271 20 C -0.017 4.017 21 C -0.155 4.155 22 C -0.068 4.068 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.129 4.129 27 C -0.112 4.112 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.257 0.743 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.779 -20.305 -4.652 22.605 hybrid contribution -0.355 0.271 0.357 0.572 sum -9.134 -20.034 -4.295 22.432 Atomic orbital electron populations 1.69956 1.06235 1.27777 1.47194 1.24914 0.95023 0.99517 0.93446 0.86416 0.79621 0.81381 0.79428 1.19393 1.20694 1.19435 1.20246 0.92664 0.88551 1.56046 0.91251 1.27584 1.09820 1.09059 1.07496 1.07094 0.77255 0.76031 0.73998 1.93524 1.70920 1.85285 1.44729 1.93514 1.71323 1.86033 1.45344 1.55480 1.56302 1.43876 1.26596 1.20298 0.78840 0.87719 0.81380 1.90931 1.62684 1.48189 1.32498 1.21936 0.98742 0.97231 0.99800 1.20587 0.90272 0.83175 0.97590 0.89802 1.88197 1.47647 1.42632 1.48661 1.22610 0.90568 0.98936 0.89588 1.21208 0.98711 0.93159 1.02448 1.19552 0.93362 0.95147 0.98714 1.21081 0.99863 0.91996 1.00785 1.21121 0.95111 0.98156 0.99247 1.21093 0.94990 0.97712 1.00283 1.21104 1.00090 0.91916 0.99834 1.20236 0.94601 0.95851 1.00558 0.92136 0.89740 0.88191 0.74274 0.86721 0.86890 0.92517 0.87905 0.89764 0.89476 0.85997 0.86047 0.85885 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.08 2.20 5.46 -17.82 -0.10 2.10 16 3 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.25 9.13 -34.44 -0.31 -15.57 16 8 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 9 C -0.40 -10.23 5.64 36.01 0.20 -10.03 16 10 S 2.55 55.97 5.03 -107.50 -0.54 55.43 16 11 O -0.95 -23.93 17.04 -64.79 -1.10 -25.03 16 12 O -0.97 -22.40 18.08 -57.54 -1.04 -23.44 16 13 N -1.06 -16.92 5.60 31.22 0.17 -16.74 16 14 C 0.53 8.72 7.44 -10.99 -0.08 8.64 16 15 O -0.47 -9.91 13.50 -20.92 -0.28 -10.19 16 16 C -0.14 -1.54 5.10 -27.88 -0.14 -1.68 16 17 C 0.14 1.78 2.28 -27.90 -0.06 1.72 16 18 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 19 O -0.35 -5.19 9.62 -50.09 -0.48 -5.68 16 20 C 0.06 0.67 6.85 37.14 0.25 0.93 16 21 C -0.12 -1.08 6.00 -27.88 -0.17 -1.24 16 22 C -0.07 -0.68 5.78 -104.59 -0.60 -1.29 16 23 C -0.12 -1.02 9.67 -39.51 -0.38 -1.40 16 24 C -0.12 -0.93 10.05 -39.64 -0.40 -1.32 16 25 C -0.12 -0.97 10.05 -39.65 -0.40 -1.37 16 26 C -0.11 -0.99 9.08 -39.50 -0.36 -1.35 16 27 C -0.11 -1.19 5.46 -104.62 -0.57 -1.76 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.08 2.08 8.14 -51.92 -0.42 1.65 16 30 H 0.10 2.68 7.19 -51.92 -0.37 2.31 16 31 H 0.42 4.75 8.79 -34.47 -0.30 4.44 16 32 H 0.11 0.88 6.32 -51.93 -0.33 0.55 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.13 0.87 6.46 -52.48 -0.34 0.53 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -37.94 356.70 -10.40 -48.34 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.10 Total: 3.88 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -3.12 Total: -23.62 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.91 Total: -41.44 kcal Atomic # 8 Polarization: -61.44 SS G_CDS: -2.91 Total: -64.35 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 55.97 SS G_CDS: -0.54 Total: 55.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.94 -10.40 -48.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.884 kcal (2) G-P(sol) polarization free energy of solvation -37.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds