Wall clock time and date at job start Tue Mar 31 2020 21:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47098 * 179.97438 * 9 7 2 11 11 O 1.42107 * 110.54111 * 291.62282 * 10 9 7 12 12 O 1.42102 * 110.54223 * 68.37292 * 10 9 7 13 13 N 1.65600 * 104.45074 * 179.97438 * 10 9 7 14 14 C 1.34775 * 119.99844 * 64.99364 * 13 10 9 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 10 16 16 C 1.50698 * 119.99913 * 179.97438 * 14 13 10 17 17 C 1.53002 * 109.47303 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.33271 * 55.00241 * 17 16 14 19 19 O 1.42720 * 109.34100 * 295.33137 * 17 16 14 20 20 C 1.43160 * 113.17289 * 187.88311 * 19 17 16 21 21 C 1.52974 * 108.32573 * 70.93816 * 20 19 17 22 22 C 1.50743 * 109.75000 * 310.72865 * 21 20 19 23 23 C 1.38599 * 118.75686 * 196.86811 * 22 21 20 24 24 C 1.38068 * 120.27535 * 180.24192 * 23 22 21 25 25 C 1.38252 * 119.86140 * 0.02562 * 24 23 22 26 26 C 1.38051 * 119.89984 * 359.90394 * 25 24 23 27 27 C 1.37903 * 121.35780 * 16.95863 * 22 21 20 28 28 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 31 31 H 0.96993 * 120.00181 * 245.00479 * 13 10 9 32 32 H 1.08994 * 109.47744 * 300.00807 * 16 14 13 33 33 H 1.09000 * 109.47163 * 60.01025 * 16 14 13 34 34 H 1.09001 * 109.73699 * 311.27306 * 20 19 17 35 35 H 1.09004 * 109.67696 * 190.57525 * 20 19 17 36 36 H 1.09001 * 109.42008 * 190.64122 * 21 20 19 37 37 H 1.09002 * 109.37780 * 70.78661 * 21 20 19 38 38 H 1.07997 * 119.86233 * 0.22885 * 23 22 21 39 39 H 1.08006 * 120.06883 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.05066 * 179.91175 * 25 24 23 41 41 H 1.08006 * 119.85049 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.1264 -3.9384 -1.2365 12 8 3.1265 -3.9384 1.2375 13 7 1.4793 -5.2342 0.0013 14 6 0.6882 -5.5031 -1.0562 15 8 0.6726 -4.7522 -2.0085 16 6 -0.1762 -6.7375 -1.0558 17 6 -0.9684 -6.8059 -2.3630 18 1 -0.2788 -6.7569 -3.2058 19 8 -1.8715 -5.7027 -2.4267 20 6 -2.7805 -5.7817 -3.5299 21 6 -3.7813 -6.9040 -3.2490 22 6 -3.0442 -8.1519 -2.8344 23 6 -3.7120 -9.3657 -2.8763 24 6 -3.0686 -10.5275 -2.4988 25 6 -1.7529 -10.4797 -2.0767 26 6 -1.0867 -9.2714 -2.0360 27 6 -1.7308 -8.1042 -2.4170 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 0.8903 30 1 0.6246 -2.5571 -0.8897 31 1 1.4919 -5.8348 0.7627 32 1 0.4538 -7.6224 -0.9665 33 1 -0.8672 -6.6970 -0.2137 34 1 -2.2306 -6.0018 -4.4449 35 1 -3.3113 -4.8356 -3.6366 36 1 -4.3602 -7.1073 -4.1500 37 1 -4.4536 -6.5970 -2.4478 38 1 -4.7399 -9.4029 -3.2055 39 1 -3.5920 -11.4716 -2.5331 40 1 -1.2471 -11.3865 -1.7793 41 1 -0.0587 -9.2350 -1.7066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821582412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:59 Heat of formation + Delta-G solvation = -164.041016 kcal Electronic energy + Delta-G solvation = -27269.909104 eV Core-core repulsion = 23240.512991 eV Total energy + Delta-G solvation = -4029.396112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70860 -40.69593 -38.43143 -38.08045 -37.04315 -35.56588 -35.39832 -34.76597 -33.17053 -31.11665 -30.95674 -29.53386 -25.79136 -25.50160 -24.73306 -23.36433 -21.96602 -21.00736 -20.75683 -19.31529 -18.84921 -18.34653 -18.06782 -17.47604 -17.30992 -16.90170 -16.49682 -16.31073 -16.17676 -15.94531 -15.56136 -15.31120 -14.72236 -14.52666 -14.45379 -14.19743 -14.09506 -13.71014 -13.50654 -13.48649 -13.37101 -13.19421 -13.09089 -13.04861 -12.72928 -12.64567 -12.54682 -12.38883 -12.00385 -11.87175 -11.85531 -11.54461 -11.32466 -11.04159 -10.78990 -10.56142 -9.68495 -9.52494 -8.42348 -6.62210 -0.71992 0.38026 0.47164 1.15037 1.36299 1.41110 1.48952 1.63953 2.29661 2.71535 2.76149 2.86680 2.91345 3.13740 3.41266 3.60522 3.75174 3.80862 3.92033 4.08852 4.13780 4.24558 4.30532 4.32243 4.40873 4.61304 4.64648 4.65554 4.68217 4.77218 4.82266 4.89306 4.98594 5.10611 5.19064 5.28130 5.53395 5.63037 5.65073 5.68037 5.79561 6.10214 6.20393 6.47258 6.57154 7.09411 8.70461 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018394 B = 0.003002 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.840674 B = 9325.461217 C =10471.132306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.570 4.570 8 H 0.068 0.932 9 C -0.422 4.422 10 S 2.601 3.399 11 O -0.986 6.986 12 O -0.980 6.980 13 N -1.043 6.043 14 C 0.528 3.472 15 O -0.523 6.523 16 C -0.125 4.125 17 C 0.139 3.861 18 H 0.066 0.934 19 O -0.389 6.389 20 C 0.051 3.949 21 C -0.110 4.110 22 C -0.087 4.087 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.129 4.129 28 H 0.274 0.726 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.448 0.552 32 H 0.160 0.840 33 H 0.135 0.865 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 -23.371 -3.331 25.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.609 4.609 8 H 0.086 0.914 9 C -0.556 4.556 10 S 2.701 3.299 11 O -0.976 6.976 12 O -0.971 6.971 13 N -0.809 5.809 14 C 0.316 3.684 15 O -0.395 6.395 16 C -0.166 4.166 17 C 0.080 3.920 18 H 0.084 0.916 19 O -0.308 6.308 20 C -0.025 4.025 21 C -0.147 4.147 22 C -0.087 4.087 23 C -0.143 4.143 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.130 4.130 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.288 0.712 32 H 0.177 0.823 33 H 0.153 0.847 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.005 -22.627 -3.902 24.663 hybrid contribution -0.351 0.856 0.109 0.931 sum -9.356 -21.771 -3.793 23.998 Atomic orbital electron populations 1.70050 1.07693 1.29001 1.47682 1.25906 0.96002 1.03341 0.92698 0.85462 0.78679 0.77016 0.79925 1.18937 1.19267 1.18089 1.20710 0.93093 0.90461 1.56590 0.91364 1.27653 1.10753 1.11000 1.06208 1.05345 0.76054 0.75627 0.72890 1.93483 1.71723 1.85954 1.46412 1.93494 1.71536 1.86409 1.45611 1.54909 1.55605 1.42495 1.27912 1.21323 0.78305 0.88615 0.80136 1.90921 1.64075 1.50127 1.34423 1.22108 0.98537 0.95716 1.00241 1.20624 0.90103 0.83861 0.97399 0.91637 1.88134 1.48581 1.44268 1.49782 1.22770 0.90804 1.00098 0.88866 1.21142 0.98029 0.92166 1.03380 1.19747 0.93594 0.95962 0.99420 1.21321 1.00755 0.91628 1.00645 1.21495 0.95314 0.98877 0.98050 1.21439 0.95146 0.98222 0.99500 1.21348 1.00999 0.91600 0.99514 1.20130 0.95039 0.95314 1.02481 0.91666 0.89838 0.90589 0.71237 0.82289 0.84676 0.92751 0.87933 0.87681 0.89513 0.84265 0.83665 0.83447 0.83701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.03 13.29 21.45 0.28 -53.74 16 2 C 0.02 1.38 5.46 84.66 0.46 1.84 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.57 -33.35 9.13 25.60 0.23 -33.11 16 8 H 0.07 3.87 7.71 -2.91 -0.02 3.85 16 9 C -0.42 -22.24 5.64 71.24 0.40 -21.84 16 10 S 2.60 114.79 5.03 -56.49 -0.28 114.51 16 11 O -0.99 -50.16 17.04 -120.72 -2.06 -52.21 16 12 O -0.98 -44.54 18.08 -127.65 -2.31 -46.85 16 13 N -1.04 -32.23 5.60 -173.53 -0.97 -33.20 16 14 C 0.53 17.15 7.44 87.66 0.65 17.81 16 15 O -0.52 -22.72 13.50 22.28 0.30 -22.42 16 16 C -0.13 -2.62 5.10 29.85 0.15 -2.47 16 17 C 0.14 3.45 2.28 29.84 0.07 3.52 16 18 H 0.07 1.80 7.95 -2.38 -0.02 1.78 16 19 O -0.39 -11.87 9.62 -134.78 -1.30 -13.17 16 20 C 0.05 1.20 6.85 71.97 0.49 1.70 16 21 C -0.11 -1.96 6.00 29.85 0.18 -1.78 16 22 C -0.09 -1.65 5.78 -19.84 -0.11 -1.76 16 23 C -0.13 -1.85 9.67 22.32 0.22 -1.64 16 24 C -0.12 -1.49 10.05 22.23 0.22 -1.26 16 25 C -0.13 -1.55 10.05 22.23 0.22 -1.33 16 26 C -0.12 -1.75 9.08 22.32 0.20 -1.55 16 27 C -0.13 -2.58 5.46 -19.86 -0.11 -2.69 16 28 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.08 4.28 8.14 -2.39 -0.02 4.26 16 30 H 0.08 4.32 7.19 -2.39 -0.02 4.31 16 31 H 0.45 8.98 8.79 -96.75 -0.85 8.13 16 32 H 0.16 1.86 6.32 -2.39 -0.02 1.85 16 33 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 1.25 8.07 -2.39 -0.02 1.23 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 41 H 0.15 1.48 6.46 -2.91 -0.02 1.46 16 Total: -1.00 -84.93 356.70 -0.80 -85.74 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.22 Total: 19.86 kcal Atomic # 6 Polarization: -47.85 SS G_CDS: 3.29 Total: -44.57 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -0.69 Total: -86.95 kcal Atomic # 8 Polarization: -129.29 SS G_CDS: -5.36 Total: -134.65 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 114.79 SS G_CDS: -0.28 Total: 114.51 kcal Total: -84.93 -0.80 -85.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.306 kcal (2) G-P(sol) polarization free energy of solvation -84.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds