Wall clock time and date at job start Tue Mar 31 2020 22:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38281 * 119.87891 * 2 1 4 4 C 1.37967 * 120.20809 * 179.97438 * 3 2 1 5 5 C 1.39605 * 119.96274 * 0.02562 * 4 3 2 6 6 C 1.47854 * 120.12098 * 180.02562 * 5 4 3 7 7 N 1.34782 * 119.99539 * 359.97438 * 6 5 4 8 8 O 1.21549 * 120.00554 * 179.97438 * 6 5 4 9 9 C 1.39492 * 119.76197 * 359.72432 * 5 4 3 10 10 C 1.38489 * 119.79394 * 0.54214 * 9 5 4 11 11 O 1.35915 * 119.98539 * 179.73110 * 10 9 5 12 12 S 1.52207 * 113.99863 * 269.72957 * 11 10 9 13 13 O 1.42095 * 104.27549 * 191.07164 * 12 11 10 14 14 O 1.42100 * 104.27432 * 318.92898 * 12 11 10 15 15 C 1.81402 * 104.45045 * 74.99859 * 12 11 10 16 16 C 1.52995 * 109.47312 * 175.71923 * 15 12 11 17 17 C 1.50709 * 115.54684 * 65.40154 * 16 15 12 18 18 H 1.07999 * 119.99671 * 264.74635 * 17 16 15 19 19 C 1.37871 * 119.99761 * 84.75237 * 17 16 15 20 20 N 1.31517 * 120.00217 * 352.36746 * 19 17 16 21 21 Si 1.86797 * 119.99869 * 172.36673 * 19 17 16 22 22 H 1.48501 * 109.47378 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47387 * 120.00130 * 21 19 17 24 24 H 1.48507 * 109.47049 * 239.99724 * 21 19 17 25 25 C 1.52997 * 117.49931 * 279.73516 * 16 15 12 26 26 C 1.52998 * 117.50189 * 211.07164 * 16 15 12 27 27 H 1.09001 * 109.46843 * 270.02034 * 1 2 3 28 28 H 1.09004 * 109.47039 * 30.01980 * 1 2 3 29 29 H 1.08999 * 109.46927 * 150.01567 * 1 2 3 30 30 H 1.07997 * 119.90158 * 0.02562 * 3 2 1 31 31 H 1.07993 * 120.01885 * 180.02562 * 4 3 2 32 32 H 0.97000 * 120.00060 * 0.02562 * 7 6 5 33 33 H 0.97003 * 119.99760 * 180.02562 * 7 6 5 34 34 H 1.08005 * 120.10290 * 180.27334 * 9 5 4 35 35 H 1.09009 * 109.46958 * 295.71986 * 15 12 11 36 36 H 1.09004 * 109.47082 * 55.71783 * 15 12 11 37 37 H 0.97002 * 119.99808 * 185.02169 * 20 19 17 38 38 H 1.08998 * 117.49644 * 359.97438 * 25 16 15 39 39 H 1.09002 * 117.49730 * 145.01705 * 25 16 15 40 40 H 1.08996 * 117.50005 * 214.98304 * 26 16 15 41 41 H 1.08998 * 117.49446 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1990 0.0000 4 6 3.5756 1.2069 0.0005 5 6 4.2798 0.0015 0.0005 6 6 5.7583 0.0059 0.0017 7 7 6.4287 1.1752 0.0022 8 8 6.3693 -1.0449 0.0021 9 6 3.5835 -1.2072 0.0058 10 6 2.1986 -1.2036 -0.0003 11 8 1.5162 -2.3790 -0.0007 12 16 1.2060 -2.9142 -1.3914 13 8 0.2858 -3.9724 -1.1623 14 8 0.8284 -1.7628 -2.1337 15 6 2.7897 -3.5660 -1.9894 16 6 2.5849 -4.2345 -3.3503 17 6 2.1772 -3.3140 -4.4718 18 1 1.1330 -3.1963 -4.7212 19 6 3.1373 -2.6224 -5.1795 20 7 4.3912 -2.6469 -4.7835 21 14 2.6571 -1.6505 -6.7007 22 1 1.1964 -1.7839 -6.9327 23 1 2.9985 -0.2190 -6.5018 24 1 3.3947 -2.1765 -7.8774 25 6 2.0180 -5.6555 -3.3611 26 6 3.4914 -5.4163 -3.7004 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5136 30 1 1.6524 2.1322 0.0004 31 1 4.1105 2.1451 0.0009 32 1 5.9411 2.0138 0.0022 33 1 7.3987 1.1781 0.0026 34 1 4.1227 -2.1430 0.0103 35 1 3.5042 -2.7489 -2.0898 36 1 3.1728 -4.2984 -1.2788 37 1 5.0538 -2.1028 -5.2372 38 1 1.7913 -6.1142 -2.3987 39 1 1.3504 -5.9248 -4.1796 40 1 3.7926 -5.5283 -4.7419 41 1 4.2339 -5.7172 -2.9614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830391551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:49 Heat of formation + Delta-G solvation = -91.750069 kcal Electronic energy + Delta-G solvation = -28622.124232 eV Core-core repulsion = 24595.862891 eV Total energy + Delta-G solvation = -4026.261342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12636 -39.57887 -37.62330 -36.75978 -36.43718 -35.35860 -33.97661 -32.77733 -32.03728 -30.51593 -28.32216 -27.54400 -25.48676 -23.48473 -23.07502 -21.38810 -21.19896 -20.08790 -19.27922 -18.36587 -17.57292 -17.34542 -16.96421 -16.34603 -15.93640 -15.54066 -14.92135 -14.80866 -14.78972 -14.59001 -14.08532 -13.95652 -13.76045 -13.60132 -13.10024 -12.94625 -12.48709 -12.27621 -12.07738 -11.88353 -11.83870 -11.70513 -11.41951 -11.29333 -11.22360 -11.01734 -10.95715 -10.59812 -10.46185 -10.17153 -10.11245 -9.83492 -9.69361 -9.11432 -8.95533 -8.83117 -8.57087 -8.11122 -6.12276 -4.23645 0.45331 0.75656 1.27519 2.68608 2.73680 3.27222 3.34937 3.35649 3.42281 3.61345 4.29711 4.36973 4.49140 4.53899 4.54222 4.77743 4.79600 5.04331 5.13273 5.14908 5.21135 5.46312 5.56170 5.61151 5.64514 5.87294 5.91252 5.98883 6.05493 6.10513 6.24364 6.25158 6.37121 6.60393 6.63031 6.71246 6.73162 7.00027 7.16273 7.22654 7.40262 7.81115 8.13596 8.20190 8.81991 9.47241 10.94936 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009663 B = 0.005759 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.047134 B = 4861.193647 C = 5758.780491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.028 4.028 3 C -0.114 4.114 4 C -0.072 4.072 5 C -0.129 4.129 6 C 0.567 3.433 7 N -0.851 5.851 8 O -0.528 6.528 9 C -0.060 4.060 10 C 0.074 3.926 11 O -0.679 6.679 12 S 2.582 3.418 13 O -0.943 6.943 14 O -0.938 6.938 15 C -0.576 4.576 16 C 0.044 3.956 17 C -0.515 4.515 18 H 0.070 0.930 19 C 0.082 3.918 20 N -0.870 5.870 21 Si 0.891 3.109 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.283 1.283 25 C -0.210 4.210 26 C -0.139 4.139 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.400 0.600 33 H 0.406 0.594 34 H 0.154 0.846 35 H 0.138 0.862 36 H 0.104 0.896 37 H 0.262 0.738 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 11.077 11.786 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.030 4.030 3 C -0.132 4.132 4 C -0.091 4.091 5 C -0.133 4.133 6 C 0.353 3.647 7 N -0.416 5.416 8 O -0.404 6.404 9 C -0.081 4.081 10 C 0.032 3.968 11 O -0.637 6.637 12 S 2.683 3.317 13 O -0.942 6.942 14 O -0.937 6.937 15 C -0.707 4.707 16 C 0.042 3.958 17 C -0.552 4.552 18 H 0.088 0.912 19 C -0.123 4.123 20 N -0.505 5.505 21 Si 0.718 3.282 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.209 1.209 25 C -0.247 4.247 26 C -0.178 4.178 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.229 0.771 33 H 0.237 0.763 34 H 0.172 0.828 35 H 0.156 0.844 36 H 0.123 0.877 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.163 10.391 11.937 15.827 hybrid contribution 0.763 0.601 -1.017 1.406 sum 0.600 10.992 10.921 15.506 Atomic orbital electron populations 1.20964 0.89657 1.04847 1.02572 1.20236 0.97616 0.91459 0.93733 1.20869 0.93669 0.97300 1.01375 1.21362 0.94493 0.96969 0.96309 1.19558 0.93074 0.93405 1.07229 1.18077 0.87124 0.83936 0.75567 1.43669 1.11136 1.08248 1.78511 1.90863 1.69562 1.31270 1.48726 1.21425 0.91729 1.00028 0.94926 1.17643 0.89448 0.81695 1.08037 1.85774 1.75907 1.42178 1.59826 1.05861 0.78457 0.75281 0.72149 1.93542 1.60276 1.57545 1.82806 1.93582 1.81840 1.47712 1.70558 1.30245 1.20155 1.12084 1.08192 1.18243 1.01377 0.86545 0.89650 1.20536 0.93699 1.26306 1.14668 0.91185 1.24964 0.94649 0.95580 0.97151 1.70004 1.01490 1.38440 1.40542 0.86531 0.79224 0.79662 0.82734 1.19201 1.20730 1.20877 1.23238 0.97833 1.02147 1.01514 1.22561 0.90786 1.03502 1.00947 0.90159 0.89921 0.90681 0.83902 0.84698 0.77062 0.76287 0.82837 0.84369 0.87728 0.92778 0.90600 0.89349 0.89450 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.42 36.01 0.34 -1.31 16 2 C -0.03 -0.41 5.30 -104.39 -0.55 -0.96 16 3 C -0.11 -1.26 9.67 -39.66 -0.38 -1.65 16 4 C -0.07 -0.75 9.54 -39.17 -0.37 -1.13 16 5 C -0.13 -1.80 5.87 -104.98 -0.62 -2.42 16 6 C 0.57 7.94 8.05 -12.32 -0.10 7.84 16 7 N -0.85 -7.34 8.82 30.53 0.27 -7.07 16 8 O -0.53 -9.70 17.18 5.32 0.09 -9.61 16 9 C -0.06 -0.99 8.07 -39.02 -0.31 -1.31 16 10 C 0.07 1.26 4.77 -39.28 -0.19 1.07 16 11 O -0.68 -12.62 9.33 -51.80 -0.48 -13.11 16 12 S 2.58 55.68 4.52 -107.50 -0.49 55.20 16 13 O -0.94 -21.99 18.09 -67.04 -1.21 -23.20 16 14 O -0.94 -21.59 14.09 -67.04 -0.94 -22.53 16 15 C -0.58 -12.85 5.19 37.16 0.19 -12.66 16 16 C 0.04 1.10 1.32 -155.66 -0.21 0.89 16 17 C -0.52 -14.11 8.11 -34.44 -0.28 -14.38 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 20 N -0.87 -24.20 12.98 55.43 0.72 -23.48 16 21 Si 0.89 21.35 29.55 -169.99 -5.02 16.32 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C -0.21 -4.73 9.96 -26.69 -0.27 -4.99 16 26 C -0.14 -3.25 9.49 -26.69 -0.25 -3.51 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 29 H 0.07 1.20 5.54 -51.93 -0.29 0.91 16 30 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.14 0.78 6.40 -52.49 -0.34 0.45 16 32 H 0.40 2.07 6.86 -40.82 -0.28 1.79 16 33 H 0.41 2.95 8.93 -40.82 -0.36 2.59 16 34 H 0.15 2.56 7.20 -52.48 -0.38 2.18 16 35 H 0.14 3.20 6.93 -51.92 -0.36 2.84 16 36 H 0.10 2.02 8.09 -51.92 -0.42 1.60 16 37 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 40 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 41 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -35.76 358.96 -9.68 -45.44 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.93 Total: 9.00 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: -3.10 Total: -32.37 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.99 Total: -30.55 kcal Atomic # 8 Polarization: -65.91 SS G_CDS: -2.55 Total: -68.46 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 55.68 SS G_CDS: -0.49 Total: 55.20 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.76 -9.68 -45.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830391551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.312 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds