Wall clock time and date at job start Tue Mar 31 2020 22:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47231 * 246.43658 * 3 2 1 5 5 N 1.46499 * 109.47246 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99877 * 275.00242 * 5 4 3 7 7 C 1.52999 * 109.47268 * 274.99865 * 6 5 4 8 8 F 1.39898 * 109.47074 * 59.99916 * 7 6 5 9 9 F 1.39900 * 109.47642 * 180.02562 * 7 6 5 10 10 F 1.39904 * 109.47186 * 300.00161 * 7 6 5 11 11 S 1.65598 * 120.00027 * 94.99980 * 5 4 3 12 12 O 1.42104 * 104.27721 * 153.92650 * 11 5 4 13 13 O 1.42102 * 104.27547 * 26.07253 * 11 5 4 14 14 C 1.81402 * 104.44974 * 270.00197 * 11 5 4 15 15 C 1.52995 * 109.46903 * 186.41922 * 14 11 5 16 16 C 1.50703 * 115.55184 * 299.70282 * 15 14 11 17 17 H 1.08005 * 120.00082 * 95.17058 * 16 15 14 18 18 C 1.37873 * 120.00199 * 275.16818 * 16 15 14 19 19 N 1.31516 * 120.00034 * 7.14783 * 18 16 15 20 20 Si 1.86806 * 120.00287 * 187.14589 * 18 16 15 21 21 H 1.48494 * 109.47216 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.46894 * 300.00503 * 20 18 16 23 23 H 1.48504 * 109.46718 * 60.00106 * 20 18 16 24 24 C 1.52999 * 117.50257 * 85.37564 * 15 14 11 25 25 C 1.53001 * 117.50156 * 154.03548 * 15 14 11 26 26 H 4.44648 * 5.63290 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.46905 * 126.43869 * 3 2 1 28 28 H 1.09001 * 109.47129 * 6.44018 * 3 2 1 29 29 H 1.09001 * 109.47003 * 60.00271 * 4 3 2 30 30 H 1.09003 * 109.47056 * 300.00665 * 4 3 2 31 31 H 1.08999 * 109.47474 * 34.99809 * 6 5 4 32 32 H 1.08999 * 109.47181 * 155.00176 * 6 5 4 33 33 H 1.09000 * 109.47232 * 66.41723 * 14 11 5 34 34 H 1.09001 * 109.46714 * 306.41572 * 14 11 5 35 35 H 0.96998 * 119.99582 * 355.44011 * 19 18 16 36 36 H 1.08998 * 117.50243 * 215.00448 * 24 15 14 37 37 H 1.09002 * 117.49550 * 0.02562 * 24 15 14 38 38 H 1.09008 * 117.49378 * 359.97191 * 25 15 14 39 39 H 1.09001 * 117.50384 * 144.97276 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.5775 1.3222 5 7 4.6208 0.5788 1.3220 6 6 5.3543 -0.6234 1.7255 7 6 5.5007 -0.6444 3.2483 8 9 4.2324 -0.6518 3.8387 9 9 6.2017 -1.7921 3.6338 10 9 6.2024 0.4919 3.6651 11 16 5.4476 1.9390 0.8655 12 8 6.6943 1.8340 1.5393 13 8 4.5506 3.0049 1.1460 14 6 5.6737 1.7519 -0.9246 15 6 6.5700 2.8770 -1.4458 16 6 6.0482 4.2748 -1.2337 17 1 6.3630 4.8437 -0.3712 18 6 5.1691 4.8275 -2.1406 19 7 4.6764 4.0904 -3.1120 20 14 4.6776 6.6234 -1.9898 21 1 3.7297 6.9704 -3.0789 22 1 4.0259 6.8494 -0.6747 23 1 5.8873 7.4782 -2.0961 24 6 8.0837 2.6684 -1.3668 25 6 7.3720 2.6083 -2.7207 26 1 -1.0500 0.0001 -0.0002 27 1 3.0090 0.6112 -0.8268 28 1 3.0098 -1.0204 -0.1153 29 1 2.7928 -0.0330 2.1490 30 1 2.7919 1.5986 1.4375 31 1 4.8076 -1.5088 1.4009 32 1 6.3425 -0.6176 1.2656 33 1 4.7042 1.8005 -1.4204 34 1 6.1406 0.7893 -1.1331 35 1 4.9815 3.1772 -3.2303 36 1 8.7021 3.5422 -1.1614 37 1 8.4409 1.7294 -0.9440 38 1 7.2614 1.6296 -3.1880 39 1 7.5219 3.4423 -3.4063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831121611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:08 Heat of formation + Delta-G solvation = -150.445592 kcal Electronic energy + Delta-G solvation = -29185.370676 eV Core-core repulsion = 24614.707365 eV Total energy + Delta-G solvation = -4570.663311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.04120 -47.62313 -47.43969 -37.42286 -37.16806 -36.58686 -35.29259 -34.05700 -32.05543 -30.68347 -28.48477 -28.14056 -25.07045 -24.02785 -22.86496 -21.48655 -19.93224 -19.09474 -18.57803 -18.41150 -18.08105 -17.61989 -17.09609 -16.94184 -16.06708 -15.48562 -14.75739 -14.62820 -14.40970 -14.35340 -14.15895 -13.99522 -13.85808 -13.76372 -13.64582 -13.62268 -13.37347 -13.19194 -12.90610 -12.64267 -12.32644 -12.00773 -11.90955 -11.43446 -11.28299 -11.26770 -11.15413 -10.81570 -10.75119 -10.59340 -10.41265 -10.12986 -10.11291 -9.80914 -9.36158 -8.74167 -8.56403 -8.40788 -6.52402 -4.32191 0.66510 2.63376 2.76076 2.83091 2.92992 3.42123 3.46312 3.62868 3.74877 3.91876 4.10178 4.31439 4.36687 4.44344 4.56979 4.65684 4.87099 4.92850 4.98278 5.08845 5.11593 5.24747 5.36628 5.37658 5.66677 5.83758 5.89714 5.98139 5.98721 6.07255 6.24263 6.31543 6.45997 6.67005 6.92440 7.10138 7.59319 7.94970 8.26713 8.69944 9.47057 10.87348 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.005070 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.376870 B = 5521.776315 C = 6685.410778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.037 4.037 4 C 0.111 3.889 5 N -1.004 6.004 6 C 0.084 3.916 7 C 0.430 3.570 8 F -0.184 7.184 9 F -0.185 7.185 10 F -0.164 7.164 11 S 2.602 3.398 12 O -0.950 6.950 13 O -0.929 6.929 14 C -0.565 4.565 15 C 0.020 3.980 16 C -0.595 4.595 17 H 0.062 0.938 18 C 0.042 3.958 19 N -0.895 5.895 20 Si 1.060 2.940 21 H -0.280 1.280 22 H -0.280 1.280 23 H -0.285 1.285 24 C -0.189 4.189 25 C -0.163 4.163 26 H 0.218 0.782 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.274 0.726 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.509 -13.281 6.597 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C -0.076 4.076 4 C -0.014 4.014 5 N -0.836 5.836 6 C -0.045 4.045 7 C 0.373 3.627 8 F -0.166 7.166 9 F -0.167 7.167 10 F -0.146 7.146 11 S 2.699 3.301 12 O -0.941 6.941 13 O -0.919 6.919 14 C -0.698 4.698 15 C 0.018 3.982 16 C -0.632 4.632 17 H 0.080 0.920 18 C -0.166 4.166 19 N -0.528 5.528 20 Si 0.887 3.113 21 H -0.206 1.206 22 H -0.206 1.206 23 H -0.211 1.211 24 C -0.226 4.226 25 C -0.202 4.202 26 H 0.234 0.766 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.245 -11.428 6.597 13.589 hybrid contribution 0.714 -1.774 0.222 1.925 sum -2.531 -13.202 6.819 15.073 Atomic orbital electron populations 1.24869 0.95895 1.01032 1.00343 1.22720 0.94073 1.00481 1.00844 1.19220 0.85589 1.03108 0.99635 1.21508 0.77804 1.04952 0.97125 1.58270 1.15300 1.28824 1.81230 1.22338 1.01581 0.92264 0.88302 1.21337 0.73855 0.74035 0.93440 1.93150 1.40636 1.96207 1.86594 1.93171 1.79546 1.51095 1.92902 1.93312 1.78772 1.50609 1.91881 1.05643 0.73930 0.72362 0.78174 1.93558 1.43508 1.85052 1.71954 1.93562 1.64347 1.50215 1.83772 1.30186 1.10226 1.06189 1.23175 1.18550 0.87516 0.92913 0.99244 1.21387 1.32175 0.96893 1.12696 0.91969 1.25806 0.92473 1.05593 0.92680 1.70791 1.39009 1.10909 1.32080 0.83669 0.76713 0.74164 0.76728 1.20567 1.20584 1.21077 1.23055 0.96631 1.01425 1.01532 1.22803 1.05766 1.00606 0.91032 0.76562 0.88760 0.89061 0.89088 0.87267 0.85950 0.85545 0.85471 0.87970 0.91462 0.89183 0.90593 0.91139 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.33 19.25 29.55 0.57 -1.76 16 2 C -0.18 -2.29 13.34 -37.12 -0.50 -2.79 16 3 C -0.04 -0.44 6.02 -29.52 -0.18 -0.61 16 4 C 0.11 1.42 5.42 -4.04 -0.02 1.40 16 5 N -1.00 -13.92 2.61 -114.38 -0.30 -14.22 16 6 C 0.08 0.90 5.40 -4.04 -0.02 0.88 16 7 C 0.43 5.49 3.29 37.16 0.12 5.62 16 8 F -0.18 -2.35 15.70 2.25 0.04 -2.32 16 9 F -0.19 -2.18 17.32 2.25 0.04 -2.14 16 10 F -0.16 -2.70 15.32 2.25 0.03 -2.66 16 11 S 2.60 49.91 5.00 -107.50 -0.54 49.37 16 12 O -0.95 -19.58 15.13 -57.54 -0.87 -20.45 16 13 O -0.93 -21.51 16.04 -57.54 -0.92 -22.43 16 14 C -0.57 -10.75 5.98 37.16 0.22 -10.53 16 15 C 0.02 0.47 0.95 -155.66 -0.15 0.32 16 16 C -0.59 -15.94 7.90 -34.44 -0.27 -16.21 16 17 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 18 C 0.04 1.15 5.39 -17.82 -0.10 1.05 16 19 N -0.89 -24.90 13.57 55.43 0.75 -24.15 16 20 Si 1.06 24.81 29.91 -169.99 -5.08 19.73 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.19 -3.90 9.95 -26.70 -0.27 -4.17 16 25 C -0.16 -3.45 8.74 -26.69 -0.23 -3.68 16 26 H 0.22 1.67 7.80 -54.09 -0.42 1.25 16 27 H 0.09 1.20 7.22 -51.93 -0.37 0.83 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.00 6.73 -51.93 -0.35 0.65 16 30 H 0.11 1.63 6.81 -51.93 -0.35 1.27 16 31 H 0.12 0.79 8.11 -51.93 -0.42 0.37 16 32 H 0.13 1.18 7.61 -51.93 -0.40 0.79 16 33 H 0.13 2.47 6.86 -51.92 -0.36 2.11 16 34 H 0.10 1.52 8.11 -51.92 -0.42 1.10 16 35 H 0.27 7.37 6.17 -40.82 -0.25 7.12 16 36 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 39 H 0.09 2.04 8.14 -51.93 -0.42 1.61 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -33.42 357.51 -6.95 -40.37 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.66 Total: 4.01 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: -0.82 Total: -30.49 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.45 Total: -38.37 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.79 Total: -42.88 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.11 Total: -7.12 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.73 kcal Atomic # 16 Polarization: 49.91 SS G_CDS: -0.54 Total: 49.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.42 -6.95 -40.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831121611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.075 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds