Wall clock time and date at job start Tue Mar 31 2020 22:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47231 * 246.43658 * 3 2 1 5 5 N 1.46499 * 109.47246 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99877 * 275.00242 * 5 4 3 7 7 C 1.52999 * 109.47268 * 274.99865 * 6 5 4 8 8 F 1.39898 * 109.47074 * 59.99916 * 7 6 5 9 9 F 1.39900 * 109.47642 * 180.02562 * 7 6 5 10 10 F 1.39904 * 109.47186 * 300.00161 * 7 6 5 11 11 S 1.65598 * 120.00027 * 94.99980 * 5 4 3 12 12 O 1.42104 * 104.27721 * 153.92650 * 11 5 4 13 13 O 1.42102 * 104.27547 * 26.07253 * 11 5 4 14 14 C 1.81402 * 104.44974 * 270.00197 * 11 5 4 15 15 C 1.52995 * 109.46903 * 186.41922 * 14 11 5 16 16 C 1.50703 * 115.55184 * 299.70282 * 15 14 11 17 17 H 1.08005 * 120.00082 * 95.17058 * 16 15 14 18 18 C 1.37873 * 120.00199 * 275.16818 * 16 15 14 19 19 N 1.31516 * 120.00034 * 7.14783 * 18 16 15 20 20 Si 1.86806 * 120.00287 * 187.14589 * 18 16 15 21 21 H 1.48494 * 109.47216 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.46894 * 300.00503 * 20 18 16 23 23 H 1.48504 * 109.46718 * 60.00106 * 20 18 16 24 24 C 1.52999 * 117.50257 * 85.37564 * 15 14 11 25 25 C 1.53001 * 117.50156 * 154.03548 * 15 14 11 26 26 H 4.44648 * 5.63290 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.46905 * 126.43869 * 3 2 1 28 28 H 1.09001 * 109.47129 * 6.44018 * 3 2 1 29 29 H 1.09001 * 109.47003 * 60.00271 * 4 3 2 30 30 H 1.09003 * 109.47056 * 300.00665 * 4 3 2 31 31 H 1.08999 * 109.47474 * 34.99809 * 6 5 4 32 32 H 1.08999 * 109.47181 * 155.00176 * 6 5 4 33 33 H 1.09000 * 109.47232 * 66.41723 * 14 11 5 34 34 H 1.09001 * 109.46714 * 306.41572 * 14 11 5 35 35 H 0.96998 * 119.99582 * 355.44011 * 19 18 16 36 36 H 1.08998 * 117.50243 * 215.00448 * 24 15 14 37 37 H 1.09002 * 117.49550 * 0.02562 * 24 15 14 38 38 H 1.09008 * 117.49378 * 359.97191 * 25 15 14 39 39 H 1.09001 * 117.50384 * 144.97276 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.5775 1.3222 5 7 4.6208 0.5788 1.3220 6 6 5.3543 -0.6234 1.7255 7 6 5.5007 -0.6444 3.2483 8 9 4.2324 -0.6518 3.8387 9 9 6.2017 -1.7921 3.6338 10 9 6.2024 0.4919 3.6651 11 16 5.4476 1.9390 0.8655 12 8 6.6943 1.8340 1.5393 13 8 4.5506 3.0049 1.1460 14 6 5.6737 1.7519 -0.9246 15 6 6.5700 2.8770 -1.4458 16 6 6.0482 4.2748 -1.2337 17 1 6.3630 4.8437 -0.3712 18 6 5.1691 4.8275 -2.1406 19 7 4.6764 4.0904 -3.1120 20 14 4.6776 6.6234 -1.9898 21 1 3.7297 6.9704 -3.0789 22 1 4.0259 6.8494 -0.6747 23 1 5.8873 7.4782 -2.0961 24 6 8.0837 2.6684 -1.3668 25 6 7.3720 2.6083 -2.7207 26 1 -1.0500 0.0001 -0.0002 27 1 3.0090 0.6112 -0.8268 28 1 3.0098 -1.0204 -0.1153 29 1 2.7928 -0.0330 2.1490 30 1 2.7919 1.5986 1.4375 31 1 4.8076 -1.5088 1.4009 32 1 6.3425 -0.6176 1.2656 33 1 4.7042 1.8005 -1.4204 34 1 6.1406 0.7893 -1.1331 35 1 4.9815 3.1772 -3.2303 36 1 8.7021 3.5422 -1.1614 37 1 8.4409 1.7294 -0.9440 38 1 7.2614 1.6296 -3.1880 39 1 7.5219 3.4423 -3.4063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831121611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:08 Heat of formation + Delta-G solvation = -171.646993 kcal Electronic energy + Delta-G solvation = -29186.290038 eV Core-core repulsion = 24614.707365 eV Total energy + Delta-G solvation = -4571.582673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.04668 -48.58151 -48.53171 -38.89609 -38.45354 -38.14743 -36.88324 -34.97371 -34.05506 -31.60108 -30.02596 -29.12462 -27.06895 -25.00801 -23.91170 -23.13367 -21.68386 -20.33042 -19.58373 -19.50414 -19.15463 -18.78247 -18.73138 -18.17627 -17.30623 -16.98227 -16.12342 -15.76865 -15.65066 -15.63605 -15.40201 -15.37946 -14.98971 -14.95826 -14.87521 -14.69485 -14.68491 -14.54564 -14.19308 -13.88855 -13.64415 -13.29952 -13.23156 -13.11346 -12.99746 -12.70107 -12.64361 -12.36883 -12.31783 -12.10987 -11.96235 -11.58416 -11.41078 -10.99774 -10.59214 -10.54147 -10.51029 -10.09471 -8.61989 -6.40275 -0.78777 1.50845 1.51929 1.57021 1.76091 1.80149 1.91489 1.94076 2.52337 2.78954 2.90595 3.00634 3.04071 3.11942 3.17324 3.29000 3.45667 3.67976 3.85319 4.02596 4.06701 4.11701 4.26166 4.35080 4.38645 4.42658 4.48674 4.63809 4.85028 4.85623 4.99647 5.04645 5.13765 5.24848 5.30065 5.44543 6.00963 6.15560 6.65465 6.71959 7.41361 8.80414 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.005070 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.376870 B = 5521.776315 C = 6685.410778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.220 4.220 3 C -0.035 4.035 4 C 0.112 3.888 5 N -0.995 5.995 6 C 0.077 3.923 7 C 0.424 3.576 8 F -0.186 7.186 9 F -0.178 7.178 10 F -0.192 7.192 11 S 2.611 3.389 12 O -0.970 6.970 13 O -0.983 6.983 14 C -0.558 4.558 15 C -0.016 4.016 16 C -0.607 4.607 17 H 0.036 0.964 18 C 0.002 3.998 19 N -0.915 5.915 20 Si 1.086 2.914 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.268 1.268 24 C -0.179 4.179 25 C -0.155 4.155 26 H 0.246 0.754 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.176 0.824 32 H 0.145 0.855 33 H 0.120 0.880 34 H 0.151 0.849 35 H 0.273 0.727 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 -15.973 6.249 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.221 4.221 3 C -0.072 4.072 4 C -0.013 4.013 5 N -0.829 5.829 6 C -0.051 4.051 7 C 0.367 3.633 8 F -0.168 7.168 9 F -0.160 7.160 10 F -0.173 7.173 11 S 2.709 3.291 12 O -0.960 6.960 13 O -0.973 6.973 14 C -0.691 4.691 15 C -0.019 4.019 16 C -0.644 4.644 17 H 0.054 0.946 18 C -0.201 4.201 19 N -0.549 5.549 20 Si 0.909 3.091 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.216 4.216 25 C -0.194 4.194 26 H 0.263 0.737 27 H 0.097 0.903 28 H 0.146 0.854 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.194 0.806 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.169 0.831 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.324 -14.115 6.255 15.792 hybrid contribution 0.736 -1.011 0.416 1.318 sum -2.588 -15.126 6.670 16.733 Atomic orbital electron populations 1.25728 0.96907 0.99885 0.98855 1.23199 0.94995 1.01673 1.02213 1.19221 0.85322 1.04749 0.97953 1.21558 0.76916 1.03841 0.98946 1.57707 1.15572 1.28768 1.80843 1.22877 1.03173 0.92410 0.86591 1.21734 0.73517 0.73380 0.94634 1.93145 1.40650 1.96164 1.86833 1.93183 1.79399 1.50429 1.92971 1.93262 1.79459 1.52304 1.92316 1.05009 0.73234 0.72649 0.78223 1.93523 1.44464 1.85641 1.72393 1.93496 1.65603 1.53611 1.84598 1.30024 1.09489 1.07076 1.22471 1.18643 0.89351 0.92380 1.01479 1.21579 1.32061 0.99209 1.11568 0.94564 1.26700 0.92782 1.07995 0.92653 1.70849 1.40016 1.11197 1.32874 0.83349 0.77278 0.71876 0.76608 1.19919 1.20871 1.19361 1.23132 0.94908 1.02535 1.01020 1.22772 1.04840 1.01290 0.90513 0.73738 0.90326 0.85399 0.86898 0.90331 0.80631 0.83696 0.86132 0.83068 0.91596 0.90337 0.87307 0.87975 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.11 19.25 74.32 1.43 -2.68 16 2 C -0.22 -5.24 13.34 31.13 0.42 -4.83 16 3 C -0.03 -0.73 6.02 28.79 0.17 -0.56 16 4 C 0.11 2.72 5.42 86.38 0.47 3.19 16 5 N -0.99 -25.58 2.61 -515.79 -1.35 -26.93 16 6 C 0.08 1.36 5.40 86.38 0.47 1.82 16 7 C 0.42 9.85 3.29 71.98 0.24 10.09 16 8 F -0.19 -4.38 15.70 44.97 0.71 -3.67 16 9 F -0.18 -3.72 17.32 44.97 0.78 -2.94 16 10 F -0.19 -6.15 15.32 44.97 0.69 -5.46 16 11 S 2.61 98.86 5.00 -56.49 -0.28 98.58 16 12 O -0.97 -39.25 15.13 -127.65 -1.93 -41.18 16 13 O -0.98 -47.18 16.04 -127.65 -2.05 -49.23 16 14 C -0.56 -20.28 5.98 71.98 0.43 -19.85 16 15 C -0.02 -0.73 0.95 -52.93 -0.05 -0.79 16 16 C -0.61 -33.24 7.90 25.60 0.20 -33.04 16 17 H 0.04 2.10 7.82 -2.91 -0.02 2.08 16 18 C 0.00 0.11 5.39 84.65 0.46 0.57 16 19 N -0.91 -51.36 13.57 21.45 0.29 -51.07 16 20 Si 1.09 50.84 29.91 68.60 2.05 52.89 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C -0.18 -7.07 9.95 30.62 0.30 -6.77 16 25 C -0.16 -6.32 8.74 30.62 0.27 -6.05 16 26 H 0.25 3.14 7.80 -4.42 -0.03 3.11 16 27 H 0.08 1.92 7.22 -2.39 -0.02 1.90 16 28 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.11 2.23 6.73 -2.39 -0.02 2.21 16 30 H 0.08 2.41 6.81 -2.39 -0.02 2.39 16 31 H 0.18 1.25 8.11 -2.39 -0.02 1.23 16 32 H 0.15 2.08 7.61 -2.39 -0.02 2.06 16 33 H 0.12 4.59 6.86 -2.39 -0.02 4.57 16 34 H 0.15 3.86 8.11 -2.39 -0.02 3.84 16 35 H 0.27 14.72 6.17 -92.71 -0.57 14.15 16 36 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 37 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.10 3.47 8.14 -2.38 -0.02 3.45 16 39 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -75.78 357.51 4.98 -70.80 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.27 Total: 17.10 kcal Atomic # 6 Polarization: -63.68 SS G_CDS: 4.80 Total: -58.88 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.06 Total: -78.00 kcal Atomic # 8 Polarization: -86.44 SS G_CDS: -3.98 Total: -90.42 kcal Atomic # 9 Polarization: -14.25 SS G_CDS: 2.17 Total: -12.08 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal Atomic # 16 Polarization: 98.86 SS G_CDS: -0.28 Total: 98.58 kcal Total: -75.78 4.98 -70.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831121611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.847 kcal (2) G-P(sol) polarization free energy of solvation -75.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds