Wall clock time and date at job start Tue Mar 31 2020 23:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46828 * 90.00241 * 8 6 4 10 10 H 1.48494 * 109.47178 * 209.99936 * 8 6 4 11 11 H 1.48500 * 109.47075 * 330.00183 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 S 1.81404 * 109.46946 * 299.99763 * 12 2 1 14 14 O 1.42098 * 110.54122 * 291.62548 * 13 12 2 15 15 O 1.42102 * 110.54223 * 68.37613 * 13 12 2 16 16 O 1.52197 * 104.45018 * 180.02562 * 13 12 2 17 17 C 1.35914 * 114.00031 * 74.99541 * 16 13 12 18 18 C 1.38864 * 119.89461 * 90.00260 * 17 16 13 19 19 C 1.38369 * 120.12837 * 179.97438 * 18 17 16 20 20 C 1.37623 * 120.03807 * 359.97438 * 19 18 17 21 21 C 1.39688 * 120.42184 * 0.02732 * 20 19 18 22 22 C 1.38452 * 119.90293 * 269.72897 * 17 16 13 23 23 C 1.47567 * 108.27750 * 179.97438 * 21 20 19 24 24 O 1.21547 * 124.86088 * 179.97438 * 23 21 20 25 25 N 1.34419 * 110.28432 * 359.97438 * 23 21 20 26 26 C 1.46720 * 108.76050 * 359.97438 * 25 23 21 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 35 35 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 36 36 H 1.07997 * 119.93702 * 359.97438 * 18 17 16 37 37 H 1.08003 * 119.97797 * 179.97438 * 19 18 17 38 38 H 1.08002 * 120.10979 * 359.97438 * 22 17 16 39 39 H 0.97001 * 125.61806 * 180.02562 * 25 23 21 40 40 H 1.09000 * 110.09932 * 240.80362 * 26 25 23 41 41 H 1.09000 * 110.09363 * 119.20145 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3444 -2.1615 -4.4124 10 1 2.4870 -0.1403 -5.1121 11 1 3.6306 -1.7567 -3.7121 12 6 2.0401 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 8 2.0481 1.4099 2.8544 15 8 0.0280 -0.0184 2.8544 16 8 2.0041 -0.6694 3.8913 17 6 3.3313 -0.4686 4.1049 18 6 3.7493 0.5378 4.9655 19 6 5.0992 0.7461 5.1868 20 6 6.0311 -0.0447 4.5543 21 6 5.6243 -1.0606 3.6861 22 6 4.2621 -1.2717 3.4681 23 6 6.8295 -1.7322 3.1625 24 8 6.8220 -2.6626 2.3805 25 7 7.9369 -1.1677 3.6743 26 6 7.5391 -0.0796 4.5745 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 0.7080 1.1609 -3.4844 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2494 36 1 3.0194 1.1591 5.4630 37 1 5.4216 1.5299 5.8563 38 1 3.9352 -2.0572 2.8028 39 1 8.8488 -1.4353 3.4799 40 1 7.9413 0.8683 4.2169 41 1 7.8947 -0.2806 5.5850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831237339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:46 Heat of formation + Delta-G solvation = -93.548980 kcal Electronic energy + Delta-G solvation = -28281.956680 eV Core-core repulsion = 24255.617331 eV Total energy + Delta-G solvation = -4026.339348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66463 -40.39523 -37.77681 -36.77730 -36.35129 -35.87242 -35.52839 -31.79305 -31.46410 -30.60943 -27.05006 -26.85268 -25.74772 -25.23832 -24.47636 -22.85890 -21.08035 -20.35005 -19.35262 -18.18369 -17.73791 -17.47612 -16.80429 -16.21905 -16.10530 -15.99766 -15.54495 -15.09466 -14.77369 -14.71751 -14.30717 -13.91663 -13.68798 -13.42507 -13.14795 -13.06278 -12.85206 -12.56055 -12.30212 -12.22213 -12.14511 -11.69714 -11.62459 -11.16038 -11.08690 -10.98313 -10.76019 -10.40509 -10.32348 -10.23876 -10.11734 -9.75681 -9.68246 -9.57891 -9.39731 -9.06708 -8.71144 -8.40075 -6.03667 -4.15198 0.17436 0.49250 0.97560 2.36955 2.45382 2.82981 3.27824 3.33793 3.34750 3.38635 3.67814 3.94685 4.07702 4.29114 4.38278 4.41289 4.60991 4.80972 4.88151 4.92136 5.01879 5.21747 5.29235 5.48801 5.57278 5.58805 5.69097 5.82443 5.88726 6.30685 6.34856 6.42062 6.59070 6.66781 6.76001 6.86119 6.99882 7.28740 7.47573 7.68146 7.89253 7.95988 8.07822 8.31509 8.83394 9.50450 10.97846 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.004563 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.479350 B = 6134.542307 C = 7826.199007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 C -0.163 4.163 4 C -0.502 4.502 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.604 4.604 13 S 2.572 3.428 14 O -0.956 6.956 15 O -0.930 6.930 16 O -0.675 6.675 17 C 0.076 3.924 18 C -0.060 4.060 19 C -0.084 4.084 20 C -0.077 4.077 21 C -0.143 4.143 22 C -0.056 4.056 23 C 0.564 3.436 24 O -0.514 6.514 25 N -0.724 5.724 26 C 0.142 3.858 27 H 0.026 0.974 28 H 0.097 0.903 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.096 0.904 32 H 0.028 0.972 33 H 0.262 0.738 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.427 0.573 40 H 0.103 0.897 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.557 0.735 17.666 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.083 3.917 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.736 4.736 13 S 2.673 3.327 14 O -0.955 6.955 15 O -0.928 6.928 16 O -0.633 6.633 17 C 0.034 3.966 18 C -0.080 4.080 19 C -0.103 4.103 20 C -0.079 4.079 21 C -0.146 4.146 22 C -0.077 4.077 23 C 0.351 3.649 24 O -0.390 6.390 25 N -0.382 5.382 26 C 0.018 3.982 27 H 0.045 0.955 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.115 0.885 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.269 0.731 40 H 0.121 0.879 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.909 0.712 17.698 21.343 hybrid contribution 0.722 -0.973 -1.480 1.912 sum 12.631 -0.261 16.218 20.558 Atomic orbital electron populations 1.22296 0.96775 1.00837 1.02354 1.17919 0.92872 0.92193 0.88682 1.22276 0.99753 0.97662 1.02420 1.20943 1.31737 1.12142 0.89261 0.92167 1.24919 0.94851 0.94951 0.98915 1.69792 1.36340 1.22588 1.23510 0.86530 0.79312 0.79388 0.82427 1.20587 1.21126 1.19871 1.30810 1.11643 1.13527 1.17585 1.06260 0.75394 0.75202 0.75845 1.93584 1.77283 1.40292 1.84313 1.93597 1.28674 1.85867 1.84691 1.85789 1.28756 1.80164 1.68620 1.17768 0.77989 0.98819 1.02045 1.21483 0.96875 0.94620 0.95026 1.20144 0.90433 0.99431 1.00263 1.20601 0.95674 0.95493 0.96125 1.20050 0.93268 0.99809 1.01519 1.21034 0.90755 0.98161 0.97730 1.18091 0.84122 0.82363 0.80324 1.90869 1.86725 1.27738 1.33627 1.45727 1.08855 1.35813 1.47793 1.20487 0.90394 0.91836 0.95510 0.95500 0.88406 0.94269 0.94442 0.88497 0.95318 0.92733 0.85557 0.86097 0.83108 0.83424 0.82874 0.73089 0.87914 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 7.78 37.16 0.29 -3.79 16 2 C 0.09 2.09 0.52 -155.66 -0.08 2.00 16 3 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16 4 C -0.50 -13.35 8.01 -34.44 -0.28 -13.63 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -24.16 9.35 55.43 0.52 -23.64 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 C -0.60 -12.19 4.40 37.16 0.16 -12.03 16 13 S 2.57 49.52 4.20 -107.50 -0.45 49.07 16 14 O -0.96 -19.00 13.87 -67.04 -0.93 -19.93 16 15 O -0.93 -20.32 15.71 -67.03 -1.05 -21.38 16 16 O -0.68 -11.04 10.04 -51.79 -0.52 -11.56 16 17 C 0.08 1.09 4.79 -39.27 -0.19 0.90 16 18 C -0.06 -0.69 9.04 -39.30 -0.36 -1.05 16 19 C -0.08 -0.70 10.02 -39.76 -0.40 -1.10 16 20 C -0.08 -0.69 6.37 -104.23 -0.66 -1.35 16 21 C -0.14 -1.78 6.26 -105.06 -0.66 -2.44 16 22 C -0.06 -0.78 8.51 -39.01 -0.33 -1.11 16 23 C 0.56 7.31 8.35 -12.62 -0.11 7.21 16 24 O -0.51 -8.82 18.04 5.32 0.10 -8.72 16 25 N -0.72 -5.76 6.41 -62.39 -0.40 -6.16 16 26 C 0.14 0.76 7.76 -5.00 -0.04 0.72 16 27 H 0.03 0.62 5.46 -51.93 -0.28 0.34 16 28 H 0.10 2.59 6.07 -51.93 -0.32 2.27 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 32 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.13 2.32 8.14 -51.92 -0.42 1.90 16 35 H 0.12 2.24 6.62 -51.92 -0.34 1.90 16 36 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.15 2.08 7.52 -52.49 -0.39 1.68 16 39 H 0.43 2.36 8.96 -40.82 -0.37 1.99 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -35.03 342.26 -9.85 -44.88 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.80 Total: 3.96 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -2.45 Total: -27.68 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: 0.12 Total: -29.80 kcal Atomic # 8 Polarization: -59.18 SS G_CDS: -2.41 Total: -61.59 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 49.52 SS G_CDS: -0.45 Total: 49.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.03 -9.85 -44.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831237339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.665 kcal (2) G-P(sol) polarization free energy of solvation -35.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds