Wall clock time and date at job start Tue Mar 31 2020 23:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46828 * 90.00241 * 8 6 4 10 10 H 1.48494 * 109.47178 * 209.99936 * 8 6 4 11 11 H 1.48500 * 109.47075 * 330.00183 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 S 1.81404 * 109.46946 * 299.99763 * 12 2 1 14 14 O 1.42098 * 110.54122 * 291.62548 * 13 12 2 15 15 O 1.42102 * 110.54223 * 68.37613 * 13 12 2 16 16 O 1.52197 * 104.45018 * 180.02562 * 13 12 2 17 17 C 1.35914 * 114.00031 * 74.99541 * 16 13 12 18 18 C 1.38864 * 119.89461 * 90.00260 * 17 16 13 19 19 C 1.38369 * 120.12837 * 179.97438 * 18 17 16 20 20 C 1.37623 * 120.03807 * 359.97438 * 19 18 17 21 21 C 1.39688 * 120.42184 * 0.02732 * 20 19 18 22 22 C 1.38452 * 119.90293 * 269.72897 * 17 16 13 23 23 C 1.47567 * 108.27750 * 179.97438 * 21 20 19 24 24 O 1.21547 * 124.86088 * 179.97438 * 23 21 20 25 25 N 1.34419 * 110.28432 * 359.97438 * 23 21 20 26 26 C 1.46720 * 108.76050 * 359.97438 * 25 23 21 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 35 35 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 36 36 H 1.07997 * 119.93702 * 359.97438 * 18 17 16 37 37 H 1.08003 * 119.97797 * 179.97438 * 19 18 17 38 38 H 1.08002 * 120.10979 * 359.97438 * 22 17 16 39 39 H 0.97001 * 125.61806 * 180.02562 * 25 23 21 40 40 H 1.09000 * 110.09932 * 240.80362 * 26 25 23 41 41 H 1.09000 * 110.09363 * 119.20145 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3444 -2.1615 -4.4124 10 1 2.4870 -0.1403 -5.1121 11 1 3.6306 -1.7567 -3.7121 12 6 2.0401 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 8 2.0481 1.4099 2.8544 15 8 0.0280 -0.0184 2.8544 16 8 2.0041 -0.6694 3.8913 17 6 3.3313 -0.4686 4.1049 18 6 3.7493 0.5378 4.9655 19 6 5.0992 0.7461 5.1868 20 6 6.0311 -0.0447 4.5543 21 6 5.6243 -1.0606 3.6861 22 6 4.2621 -1.2717 3.4681 23 6 6.8295 -1.7322 3.1625 24 8 6.8220 -2.6626 2.3805 25 7 7.9369 -1.1677 3.6743 26 6 7.5391 -0.0796 4.5745 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 0.7080 1.1609 -3.4844 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2494 36 1 3.0194 1.1591 5.4630 37 1 5.4216 1.5299 5.8563 38 1 3.9352 -2.0572 2.8028 39 1 8.8488 -1.4353 3.4799 40 1 7.9413 0.8683 4.2169 41 1 7.8947 -0.2806 5.5850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831237339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:45 Heat of formation + Delta-G solvation = -119.700916 kcal Electronic energy + Delta-G solvation = -28283.090713 eV Core-core repulsion = 24255.617331 eV Total energy + Delta-G solvation = -4027.473382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.60400 -41.46303 -38.78013 -38.34889 -38.20895 -37.19612 -36.69712 -33.71587 -32.40276 -31.45149 -28.60403 -27.74110 -27.71998 -27.29017 -25.37625 -23.84221 -21.95075 -21.72456 -20.95988 -19.47639 -18.89429 -18.68479 -18.00788 -17.88714 -17.23570 -16.89365 -16.79526 -16.60487 -16.31681 -15.85260 -15.18713 -15.11440 -14.82298 -14.68041 -14.51017 -14.45120 -14.27774 -14.18461 -13.95023 -13.38846 -13.20937 -13.12174 -12.99839 -12.94116 -12.86088 -12.63977 -12.57028 -12.24872 -12.20275 -12.03836 -11.62656 -11.44579 -11.19910 -10.70929 -10.55331 -10.44768 -10.24017 -9.84961 -8.07208 -6.25118 -1.06955 -0.47628 -0.05605 1.06163 1.40336 1.42364 1.51404 1.55968 2.13341 2.40181 2.44694 2.52559 2.87733 2.97303 3.15418 3.23731 3.53815 3.68377 3.84608 3.90750 4.07008 4.11223 4.36626 4.52323 4.59706 4.61713 4.71558 4.77263 4.80666 4.82076 4.91956 4.99418 5.03161 5.06212 5.32755 5.47328 5.52101 5.61205 5.63010 5.91876 5.94681 6.06730 6.30352 6.77848 7.08019 7.42821 8.92883 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.004563 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.479350 B = 6134.542307 C = 7826.199007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.073 3.927 3 C -0.157 4.157 4 C -0.521 4.521 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.903 5.903 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.274 1.274 12 C -0.613 4.613 13 S 2.599 3.401 14 O -0.963 6.963 15 O -0.961 6.961 16 O -0.667 6.667 17 C 0.031 3.969 18 C -0.066 4.066 19 C -0.067 4.067 20 C -0.053 4.053 21 C -0.174 4.174 22 C -0.074 4.074 23 C 0.551 3.449 24 O -0.576 6.576 25 N -0.703 5.703 26 C 0.140 3.860 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.263 0.737 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.166 0.834 37 H 0.203 0.797 38 H 0.138 0.862 39 H 0.440 0.560 40 H 0.141 0.859 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.312 2.103 20.045 25.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.071 3.929 3 C -0.215 4.215 4 C -0.560 4.560 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.542 5.542 8 Si 0.777 3.223 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.199 1.199 12 C -0.743 4.743 13 S 2.699 3.301 14 O -0.962 6.962 15 O -0.960 6.960 16 O -0.626 6.626 17 C -0.010 4.010 18 C -0.086 4.086 19 C -0.085 4.085 20 C -0.055 4.055 21 C -0.177 4.177 22 C -0.096 4.096 23 C 0.339 3.661 24 O -0.457 6.457 25 N -0.360 5.360 26 C 0.017 3.983 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.183 0.817 37 H 0.220 0.780 38 H 0.156 0.844 39 H 0.284 0.716 40 H 0.158 0.842 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 14.692 2.110 20.085 24.974 hybrid contribution 0.037 -1.362 -2.047 2.459 sum 14.728 0.748 18.038 23.299 Atomic orbital electron populations 1.22230 0.97408 1.00601 1.01683 1.17902 0.92518 0.92448 0.89987 1.22178 0.99755 0.97729 1.01834 1.21233 1.31856 1.12280 0.90595 0.92659 1.25590 0.95104 0.95622 1.01348 1.69909 1.36888 1.23391 1.23987 0.85663 0.78673 0.78448 0.79485 1.20260 1.20611 1.19892 1.30765 1.12431 1.13984 1.17080 1.05362 0.74505 0.74790 0.75416 1.93542 1.77261 1.40974 1.84407 1.93548 1.30811 1.86412 1.85197 1.85746 1.30442 1.79645 1.66805 1.18203 0.76703 1.01312 1.04794 1.21916 0.99052 0.93594 0.94082 1.20689 0.88577 0.99586 0.99631 1.21139 0.98007 0.93029 0.93372 1.20201 0.92509 1.01680 1.03353 1.21043 0.91941 0.98352 0.98238 1.18398 0.85591 0.82053 0.80098 1.90827 1.87624 1.30569 1.36651 1.45764 1.08335 1.35293 1.46584 1.20997 0.87607 0.92290 0.97365 0.94691 0.90439 0.94270 0.94236 0.90680 0.94197 0.92703 0.84575 0.85065 0.81653 0.78044 0.84382 0.71597 0.84156 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.21 7.78 71.98 0.56 -7.65 16 2 C 0.07 3.66 0.52 -52.93 -0.03 3.63 16 3 C -0.16 -7.79 7.78 71.98 0.56 -7.23 16 4 C -0.52 -28.32 8.01 25.60 0.21 -28.12 16 5 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 6 C 0.02 1.26 5.15 84.66 0.44 1.70 16 7 N -0.90 -50.35 9.35 21.45 0.20 -50.15 16 8 Si 0.95 43.66 29.54 68.60 2.03 45.68 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 12 C -0.61 -25.37 4.40 71.98 0.32 -25.06 16 13 S 2.60 100.80 4.20 -56.49 -0.24 100.56 16 14 O -0.96 -37.73 13.87 -118.57 -1.64 -39.38 16 15 O -0.96 -42.57 15.71 -118.57 -1.86 -44.43 16 16 O -0.67 -22.00 10.04 -61.68 -0.62 -22.62 16 17 C 0.03 0.88 4.79 22.47 0.11 0.99 16 18 C -0.07 -1.35 9.04 22.45 0.20 -1.14 16 19 C -0.07 -0.78 10.02 22.16 0.22 -0.56 16 20 C -0.05 -0.72 6.37 -19.61 -0.13 -0.85 16 21 C -0.17 -4.15 6.26 -20.15 -0.13 -4.27 16 22 C -0.07 -2.12 8.51 22.64 0.19 -1.92 16 23 C 0.55 13.96 8.35 86.76 0.72 14.68 16 24 O -0.58 -20.61 18.04 -3.86 -0.07 -20.68 16 25 N -0.70 -8.94 6.41 -469.78 -3.01 -11.95 16 26 C 0.14 0.68 7.76 85.64 0.66 1.35 16 27 H 0.03 1.67 5.46 -2.39 -0.01 1.66 16 28 H 0.08 4.23 6.07 -2.39 -0.01 4.22 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 4.04 6.07 -2.38 -0.01 4.02 16 32 H 0.04 1.83 5.46 -2.39 -0.01 1.82 16 33 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.14 5.22 8.14 -2.39 -0.02 5.20 16 35 H 0.13 5.07 6.62 -2.39 -0.02 5.05 16 36 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.20 0.21 8.06 -2.91 -0.02 0.19 16 38 H 0.14 4.11 7.52 -2.91 -0.02 4.09 16 39 H 0.44 3.49 8.96 -92.71 -0.83 2.66 16 40 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.15 -0.39 8.14 -2.39 -0.02 -0.41 16 Total: -1.00 -80.71 342.26 -1.05 -81.75 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.26 Total: 15.67 kcal Atomic # 6 Polarization: -58.37 SS G_CDS: 3.91 Total: -54.46 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -2.81 Total: -62.10 kcal Atomic # 8 Polarization: -122.91 SS G_CDS: -4.20 Total: -127.11 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 100.80 SS G_CDS: -0.24 Total: 100.56 kcal Total: -80.71 -1.05 -81.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831237339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.947 kcal (2) G-P(sol) polarization free energy of solvation -80.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds