Wall clock time and date at job start Tue Mar 31 2020 22:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37974 * 119.87744 * 2 1 4 4 C 1.38242 * 120.34780 * 180.28088 * 3 2 1 5 5 C 1.38398 * 119.76982 * 359.65540 * 4 3 2 6 6 C 1.37699 * 119.97242 * 0.17196 * 5 4 3 7 7 C 1.38919 * 120.79256 * 359.78148 * 6 5 4 8 8 O 1.36136 * 111.23680 * 180.68612 * 7 6 5 9 9 C 1.43765 * 109.25387 * 341.09701 * 8 7 6 10 10 H 1.08994 * 110.74819 * 269.37044 * 9 8 7 11 11 C 1.50696 * 110.74857 * 146.02110 * 9 8 7 12 12 O 1.21281 * 119.99818 * 1.62653 * 11 9 8 13 13 N 1.34776 * 120.00096 * 181.62883 * 11 9 8 14 14 S 1.65602 * 119.99855 * 180.02562 * 13 11 9 15 15 O 1.42105 * 104.27797 * 181.07070 * 14 13 11 16 16 O 1.42094 * 104.28097 * 308.92553 * 14 13 11 17 17 C 1.81405 * 104.44981 * 64.99867 * 14 13 11 18 18 C 1.53000 * 109.47058 * 179.97438 * 17 14 13 19 19 C 1.50693 * 109.47149 * 179.97438 * 18 17 14 20 20 H 1.08005 * 120.00271 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00221 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99791 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00280 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47188 * 59.99815 * 23 21 19 25 25 H 1.48489 * 109.47373 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46908 * 300.00463 * 23 21 19 27 27 C 1.51646 * 132.17813 * 179.45449 * 6 5 4 28 28 H 1.09000 * 109.47335 * 270.27879 * 1 2 3 29 29 H 1.08995 * 109.47190 * 30.28169 * 1 2 3 30 30 H 1.09005 * 109.47122 * 150.27812 * 1 2 3 31 31 H 1.07999 * 119.82533 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.11830 * 179.97438 * 4 3 2 33 33 H 1.07991 * 120.01197 * 180.18528 * 5 4 3 34 34 H 0.96998 * 120.00069 * 359.97438 * 13 11 9 35 35 H 1.09001 * 109.47082 * 299.99772 * 17 14 13 36 36 H 1.08998 * 109.46834 * 60.00014 * 17 14 13 37 37 H 1.09001 * 109.46999 * 299.99836 * 18 17 14 38 38 H 1.08997 * 109.47465 * 59.99781 * 18 17 14 39 39 H 0.97000 * 119.99565 * 179.97438 * 22 21 19 40 40 H 1.08998 * 110.93785 * 313.92829 * 27 6 5 41 41 H 1.09004 * 110.94063 * 77.57698 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2077 -0.0058 5 6 4.2737 0.0121 -0.0045 6 6 3.5897 -1.1830 -0.0009 7 6 2.2007 -1.2074 0.0059 8 8 1.7300 -2.4846 0.0236 9 6 2.7689 -3.3788 -0.4102 10 1 2.7266 -3.5251 -1.4894 11 6 2.6747 -4.6975 0.3130 12 8 1.7826 -4.8884 1.1123 13 7 3.5817 -5.6647 0.0717 14 16 3.4777 -7.1141 0.8660 15 8 4.5904 -7.8569 0.3870 16 8 3.3716 -6.7557 2.2369 17 6 1.9245 -7.8429 0.2766 18 6 1.7129 -9.2025 0.9457 19 6 0.4224 -9.8076 0.4566 20 1 -0.1863 -9.2755 -0.2596 21 6 0.0186 -11.0406 0.9232 22 7 0.7601 -11.6888 1.7949 23 14 -1.5807 -11.7910 0.3164 24 1 -1.5168 -11.9684 -1.1567 25 1 -1.7856 -13.1111 0.9649 26 1 -2.7110 -10.8904 0.6579 27 6 4.0591 -2.6249 -0.0094 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6495 2.1289 0.0004 32 1 4.1110 2.1463 -0.0062 33 1 5.3536 0.0164 -0.0060 34 1 4.2949 -5.5122 -0.5678 35 1 1.0950 -7.1815 0.5266 36 1 1.9719 -7.9738 -0.8045 37 1 2.5425 -9.8637 0.6953 38 1 1.6658 -9.0720 2.0268 39 1 0.4758 -12.5560 2.1235 40 1 4.8440 -2.7747 -0.7508 41 1 4.3978 -2.9302 0.9807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835273622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:45 Heat of formation + Delta-G solvation = -119.188918 kcal Electronic energy + Delta-G solvation = -26728.289679 eV Core-core repulsion = 22700.838499 eV Total energy + Delta-G solvation = -4027.451180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.84195 -39.88219 -37.78462 -36.77736 -35.70809 -34.78035 -33.92962 -33.82931 -31.45414 -31.21179 -30.14055 -27.10509 -25.67454 -25.16352 -22.60962 -21.88225 -21.57214 -21.21132 -19.53348 -18.41521 -17.99020 -17.40330 -17.12244 -16.58939 -16.16806 -15.72237 -15.57403 -15.10835 -14.96110 -14.56630 -14.30529 -14.17656 -13.87177 -13.55014 -13.48984 -13.33255 -13.00498 -12.59844 -12.59478 -12.46790 -12.26098 -11.85178 -11.82817 -11.79227 -11.69953 -11.54960 -11.16335 -11.09882 -11.04672 -10.97397 -10.45747 -10.41907 -10.29024 -9.73853 -9.22253 -9.06152 -8.50450 -8.45514 -6.13053 -4.18702 0.37589 0.89725 1.00271 1.82081 2.28610 2.96550 3.28254 3.29502 3.32801 3.35014 3.65760 3.88856 3.98897 4.24678 4.36789 4.42090 4.48981 4.53312 4.61405 4.74634 4.81720 4.94011 5.07110 5.16829 5.22205 5.24790 5.33647 5.42725 5.53703 5.54602 5.67106 5.90244 5.96975 6.04216 6.13231 6.20420 6.39747 6.46730 6.79816 7.23967 7.26848 7.32455 7.79739 8.15079 8.83947 9.45907 10.98001 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.002603 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.371670 B =10754.175856 C =11916.861405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.087 4.087 4 C -0.144 4.144 5 C -0.073 4.073 6 C -0.169 4.169 7 C 0.105 3.895 8 O -0.270 6.270 9 C 0.063 3.937 10 H 0.126 0.874 11 C 0.538 3.462 12 O -0.459 6.459 13 N -1.054 6.054 14 S 2.564 3.436 15 O -0.950 6.950 16 O -0.935 6.935 17 C -0.574 4.574 18 C 0.030 3.970 19 C -0.520 4.520 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.902 3.098 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.103 4.103 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.429 0.571 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.266 0.734 40 H 0.107 0.893 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.387 26.151 -8.573 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.105 4.105 4 C -0.162 4.162 5 C -0.091 4.091 6 C -0.170 4.170 7 C 0.060 3.940 8 O -0.182 6.182 9 C 0.002 3.998 10 H 0.143 0.857 11 C 0.321 3.679 12 O -0.328 6.328 13 N -0.816 5.816 14 S 2.664 3.336 15 O -0.940 6.940 16 O -0.925 6.925 17 C -0.709 4.709 18 C -0.009 4.009 19 C -0.560 4.560 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.729 3.271 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.140 4.140 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.264 0.736 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.170 25.491 -7.162 27.432 hybrid contribution -0.724 -0.383 -1.058 1.338 sum 6.446 25.108 -8.220 27.195 Atomic orbital electron populations 1.20725 0.90359 1.03015 1.02794 1.19170 0.96620 0.89305 1.04743 1.20816 0.94244 0.96557 0.98877 1.21033 0.94109 0.97777 1.03269 1.20281 0.99899 0.90358 0.98581 1.20634 0.93553 0.95043 1.07797 1.19408 0.91836 0.85255 0.97545 1.86968 1.36095 1.12961 1.82195 1.23269 0.87612 0.88873 1.00074 0.85703 1.19942 0.80997 0.85204 0.81753 1.90975 1.31444 1.79668 1.30665 1.55451 1.37055 1.32723 1.56367 1.06856 0.78725 0.72847 0.75160 1.93601 1.49963 1.68895 1.81561 1.93607 1.87486 1.80484 1.30919 1.30345 1.16956 1.12147 1.11485 1.18995 0.99704 0.85905 0.96328 1.20933 1.05411 1.03269 1.26370 0.91977 1.25066 0.97551 0.96942 0.94892 1.69945 1.37988 1.14711 1.30189 0.86495 0.83248 0.78377 0.78959 1.20066 1.21050 1.19999 1.21787 0.96717 0.90689 1.04795 0.90976 0.91397 0.91075 0.85034 0.85315 0.85556 0.73559 0.84993 0.85865 0.94691 0.94536 0.92424 0.87493 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.98 36.01 0.36 -0.59 16 2 C -0.10 -0.95 5.90 -104.34 -0.62 -1.57 16 3 C -0.09 -0.67 9.66 -39.68 -0.38 -1.05 16 4 C -0.14 -1.01 10.07 -39.52 -0.40 -1.41 16 5 C -0.07 -0.56 10.03 -39.72 -0.40 -0.96 16 6 C -0.17 -1.60 6.27 -104.10 -0.65 -2.25 16 7 C 0.10 1.19 6.73 -38.95 -0.26 0.92 16 8 O -0.27 -3.51 10.26 -39.24 -0.40 -3.91 16 9 C 0.06 0.64 4.05 -26.98 -0.11 0.53 16 10 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 11 C 0.54 7.21 6.87 -10.99 -0.08 7.14 16 12 O -0.46 -8.40 14.68 -22.61 -0.33 -8.73 16 13 N -1.05 -12.51 5.59 31.22 0.17 -12.34 16 14 S 2.56 45.20 5.11 -107.50 -0.55 44.65 16 15 O -0.95 -18.03 18.08 -57.54 -1.04 -19.07 16 16 O -0.93 -20.18 17.04 -64.79 -1.10 -21.29 16 17 C -0.57 -11.24 5.82 37.16 0.22 -11.02 16 18 C 0.03 0.77 4.98 -27.89 -0.14 0.63 16 19 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 20 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 23 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 C -0.10 -0.83 6.63 -26.52 -0.18 -1.00 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.07 0.66 8.01 -51.93 -0.42 0.25 16 31 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.43 3.01 8.79 -34.47 -0.30 2.71 16 35 H 0.13 2.57 7.19 -51.92 -0.37 2.19 16 36 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.88 7.92 -51.93 -0.41 0.47 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -38.49 365.53 -10.34 -48.84 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.27 Total: -0.29 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -3.05 Total: -23.91 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.91 Total: -38.18 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -2.88 Total: -53.00 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 45.20 SS G_CDS: -0.55 Total: 44.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.49 -10.34 -48.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.353 kcal (2) G-P(sol) polarization free energy of solvation -38.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds