Wall clock time and date at job start Tue Mar 31 2020 22:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37974 * 119.87744 * 2 1 4 4 C 1.38242 * 120.34780 * 180.28088 * 3 2 1 5 5 C 1.38398 * 119.76982 * 359.65540 * 4 3 2 6 6 C 1.37699 * 119.97242 * 0.17196 * 5 4 3 7 7 C 1.38919 * 120.79256 * 359.78148 * 6 5 4 8 8 O 1.36136 * 111.23680 * 180.68612 * 7 6 5 9 9 C 1.43765 * 109.25387 * 341.09701 * 8 7 6 10 10 H 1.08994 * 110.74819 * 269.37044 * 9 8 7 11 11 C 1.50696 * 110.74857 * 146.02110 * 9 8 7 12 12 O 1.21281 * 119.99818 * 1.62653 * 11 9 8 13 13 N 1.34776 * 120.00096 * 181.62883 * 11 9 8 14 14 S 1.65602 * 119.99855 * 180.02562 * 13 11 9 15 15 O 1.42105 * 104.27797 * 181.07070 * 14 13 11 16 16 O 1.42094 * 104.28097 * 308.92553 * 14 13 11 17 17 C 1.81405 * 104.44981 * 64.99867 * 14 13 11 18 18 C 1.53000 * 109.47058 * 179.97438 * 17 14 13 19 19 C 1.50693 * 109.47149 * 179.97438 * 18 17 14 20 20 H 1.08005 * 120.00271 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00221 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99791 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00280 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47188 * 59.99815 * 23 21 19 25 25 H 1.48489 * 109.47373 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46908 * 300.00463 * 23 21 19 27 27 C 1.51646 * 132.17813 * 179.45449 * 6 5 4 28 28 H 1.09000 * 109.47335 * 270.27879 * 1 2 3 29 29 H 1.08995 * 109.47190 * 30.28169 * 1 2 3 30 30 H 1.09005 * 109.47122 * 150.27812 * 1 2 3 31 31 H 1.07999 * 119.82533 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.11830 * 179.97438 * 4 3 2 33 33 H 1.07991 * 120.01197 * 180.18528 * 5 4 3 34 34 H 0.96998 * 120.00069 * 359.97438 * 13 11 9 35 35 H 1.09001 * 109.47082 * 299.99772 * 17 14 13 36 36 H 1.08998 * 109.46834 * 60.00014 * 17 14 13 37 37 H 1.09001 * 109.46999 * 299.99836 * 18 17 14 38 38 H 1.08997 * 109.47465 * 59.99781 * 18 17 14 39 39 H 0.97000 * 119.99565 * 179.97438 * 22 21 19 40 40 H 1.08998 * 110.93785 * 313.92829 * 27 6 5 41 41 H 1.09004 * 110.94063 * 77.57698 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2077 -0.0058 5 6 4.2737 0.0121 -0.0045 6 6 3.5897 -1.1830 -0.0009 7 6 2.2007 -1.2074 0.0059 8 8 1.7300 -2.4846 0.0236 9 6 2.7689 -3.3788 -0.4102 10 1 2.7266 -3.5251 -1.4894 11 6 2.6747 -4.6975 0.3130 12 8 1.7826 -4.8884 1.1123 13 7 3.5817 -5.6647 0.0717 14 16 3.4777 -7.1141 0.8660 15 8 4.5904 -7.8569 0.3870 16 8 3.3716 -6.7557 2.2369 17 6 1.9245 -7.8429 0.2766 18 6 1.7129 -9.2025 0.9457 19 6 0.4224 -9.8076 0.4566 20 1 -0.1863 -9.2755 -0.2596 21 6 0.0186 -11.0406 0.9232 22 7 0.7601 -11.6888 1.7949 23 14 -1.5807 -11.7910 0.3164 24 1 -1.5168 -11.9684 -1.1567 25 1 -1.7856 -13.1111 0.9649 26 1 -2.7110 -10.8904 0.6579 27 6 4.0591 -2.6249 -0.0094 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6495 2.1289 0.0004 32 1 4.1110 2.1463 -0.0062 33 1 5.3536 0.0164 -0.0060 34 1 4.2949 -5.5122 -0.5678 35 1 1.0950 -7.1815 0.5266 36 1 1.9719 -7.9738 -0.8045 37 1 2.5425 -9.8637 0.6953 38 1 1.6658 -9.0720 2.0268 39 1 0.4758 -12.5560 2.1235 40 1 4.8440 -2.7747 -0.7508 41 1 4.3978 -2.9302 0.9807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835273622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:45 Heat of formation + Delta-G solvation = -147.322508 kcal Electronic energy + Delta-G solvation = -26729.509643 eV Core-core repulsion = 22700.838499 eV Total energy + Delta-G solvation = -4028.671144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61926 -40.93163 -38.52210 -38.29482 -37.29695 -36.03726 -35.85864 -34.50635 -33.20611 -32.10436 -30.85922 -27.71690 -27.67755 -25.99009 -23.74398 -23.24756 -22.64869 -21.84433 -20.86618 -19.55178 -19.21799 -18.61193 -18.14809 -17.89668 -17.35028 -16.99957 -16.69582 -16.55640 -16.23823 -16.08478 -15.25333 -15.06236 -14.89540 -14.52349 -14.49689 -14.21115 -14.00553 -13.92979 -13.79793 -13.68688 -13.42979 -13.31523 -13.18771 -12.96123 -12.91504 -12.86903 -12.41000 -12.39652 -12.27400 -12.20867 -12.11579 -11.79521 -11.75286 -11.42002 -11.11710 -10.66458 -9.64913 -9.12161 -8.29002 -6.43076 -1.10216 0.30233 0.37915 0.73568 1.15188 1.38919 1.42830 1.50956 2.08565 2.35410 2.50598 2.63278 2.81966 3.04241 3.07906 3.22764 3.59063 3.71954 3.83434 3.89400 3.96592 4.00627 4.07393 4.29178 4.41334 4.49606 4.59751 4.66150 4.69361 4.75807 4.78517 4.97600 5.19988 5.20910 5.26686 5.38995 5.45528 5.49149 5.56474 5.64534 5.66816 6.01792 6.15272 6.23562 6.69160 7.26781 8.83178 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.002603 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.371670 B =10754.175856 C =11916.861405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C -0.090 4.090 4 C -0.140 4.140 5 C -0.077 4.077 6 C -0.178 4.178 7 C 0.068 3.932 8 O -0.305 6.305 9 C 0.065 3.935 10 H 0.168 0.832 11 C 0.539 3.461 12 O -0.514 6.514 13 N -1.027 6.027 14 S 2.602 3.398 15 O -0.961 6.961 16 O -0.977 6.977 17 C -0.580 4.580 18 C 0.023 3.977 19 C -0.542 4.542 20 H 0.073 0.927 21 C -0.002 4.002 22 N -0.932 5.932 23 Si 0.975 3.025 24 H -0.259 1.259 25 H -0.281 1.281 26 H -0.268 1.268 27 C -0.099 4.099 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.455 0.545 35 H 0.131 0.869 36 H 0.156 0.844 37 H 0.019 0.981 38 H 0.004 0.996 39 H 0.269 0.731 40 H 0.151 0.849 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.250 28.475 -10.952 31.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.119 4.119 3 C -0.108 4.108 4 C -0.158 4.158 5 C -0.094 4.094 6 C -0.179 4.179 7 C 0.023 3.977 8 O -0.219 6.219 9 C 0.004 3.996 10 H 0.185 0.815 11 C 0.325 3.675 12 O -0.385 6.385 13 N -0.795 5.795 14 S 2.701 3.299 15 O -0.951 6.951 16 O -0.967 6.967 17 C -0.713 4.713 18 C -0.016 4.016 19 C -0.581 4.581 20 H 0.092 0.908 21 C -0.201 4.201 22 N -0.571 5.571 23 Si 0.798 3.202 24 H -0.184 1.184 25 H -0.207 1.207 26 H -0.193 1.193 27 C -0.136 4.136 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.296 0.704 35 H 0.149 0.851 36 H 0.174 0.826 37 H 0.037 0.963 38 H 0.022 0.978 39 H 0.077 0.923 40 H 0.169 0.831 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.061 27.816 -9.581 30.504 hybrid contribution -0.922 -0.952 -0.320 1.363 sum 7.140 26.864 -9.901 29.507 Atomic orbital electron populations 1.20717 0.90284 1.03286 1.02480 1.19499 0.97154 0.89833 1.05380 1.21159 0.94946 0.96644 0.98033 1.21462 0.93989 0.98883 1.01468 1.20666 1.01308 0.89854 0.97614 1.20880 0.92883 0.96223 1.07904 1.19770 0.93175 0.84926 0.99832 1.86907 1.37639 1.14217 1.83093 1.23526 0.88300 0.86396 1.01350 0.81495 1.20734 0.79709 0.86281 0.80746 1.90959 1.33754 1.80612 1.33195 1.54764 1.37781 1.30521 1.56450 1.05389 0.77160 0.73270 0.74112 1.93581 1.49724 1.70207 1.81606 1.93558 1.87630 1.81567 1.33964 1.30258 1.18968 1.09026 1.13090 1.18827 0.98762 0.89072 0.94968 1.21445 1.06384 1.03781 1.26533 0.90848 1.26113 1.01472 0.97592 0.94945 1.70086 1.40156 1.15243 1.31637 0.85354 0.78384 0.77376 0.79090 1.18389 1.20668 1.19261 1.21905 0.96578 0.89521 1.05619 0.91616 0.89142 0.92720 0.82683 0.82429 0.82967 0.70392 0.85070 0.82615 0.96317 0.97778 0.92255 0.83089 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 9.98 71.24 0.71 -1.18 16 2 C -0.12 -2.22 5.90 -19.68 -0.12 -2.34 16 3 C -0.09 -1.18 9.66 22.21 0.21 -0.97 16 4 C -0.14 -1.52 10.07 22.31 0.22 -1.30 16 5 C -0.08 -0.94 10.03 22.18 0.22 -0.71 16 6 C -0.18 -3.00 6.27 -19.53 -0.12 -3.12 16 7 C 0.07 1.49 6.73 22.68 0.15 1.64 16 8 O -0.30 -7.97 10.26 -76.87 -0.79 -8.76 16 9 C 0.07 1.20 4.05 30.43 0.12 1.32 16 10 H 0.17 1.58 8.14 -2.39 -0.02 1.56 16 11 C 0.54 14.07 6.87 87.66 0.60 14.67 16 12 O -0.51 -19.32 14.68 23.90 0.35 -18.97 16 13 N -1.03 -22.78 5.59 -173.54 -0.97 -23.75 16 14 S 2.60 91.88 5.11 -56.49 -0.29 91.59 16 15 O -0.96 -35.86 18.08 -127.65 -2.31 -38.17 16 16 O -0.98 -43.50 17.04 -120.72 -2.06 -45.55 16 17 C -0.58 -23.00 5.82 71.98 0.42 -22.58 16 18 C 0.02 1.22 4.98 29.85 0.15 1.36 16 19 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 20 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 21 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 22 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 23 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 C -0.10 -1.34 6.63 30.73 0.20 -1.13 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.04 8.08 -2.39 -0.02 1.02 16 30 H 0.05 1.08 8.01 -2.38 -0.02 1.06 16 31 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.45 4.98 8.79 -96.75 -0.85 4.13 16 35 H 0.13 5.24 7.19 -2.39 -0.02 5.22 16 36 H 0.16 5.00 8.14 -2.39 -0.02 4.98 16 37 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.09 1.42 7.92 -2.38 -0.02 1.40 16 Total: -1.00 -88.38 365.53 -0.06 -88.44 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.22 Total: 10.62 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 3.48 Total: -44.61 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -0.69 Total: -80.73 kcal Atomic # 8 Polarization: -106.64 SS G_CDS: -4.80 Total: -111.45 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 91.88 SS G_CDS: -0.29 Total: 91.59 kcal Total: -88.38 -0.06 -88.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.884 kcal (2) G-P(sol) polarization free energy of solvation -88.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds