Wall clock time and date at job start Tue Mar 31 2020 22:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37974 * 119.82828 * 2 1 4 4 C 1.39234 * 120.24198 * 180.02562 * 3 2 1 5 5 C 1.38922 * 118.87616 * 0.29091 * 4 3 2 6 6 C 1.37698 * 120.78990 * 359.51843 * 5 4 3 7 7 C 1.38245 * 119.82005 * 179.97438 * 2 1 3 8 8 C 1.50694 * 120.12055 * 359.85368 * 7 2 1 9 9 C 1.51649 * 107.03776 * 179.48571 * 5 4 3 10 10 H 1.09001 * 110.93867 * 102.80111 * 9 5 4 11 11 C 1.50698 * 110.94255 * 226.45208 * 9 5 4 12 12 O 1.21277 * 119.99755 * 356.99141 * 11 9 5 13 13 N 1.34775 * 120.00150 * 176.99052 * 11 9 5 14 14 S 1.65598 * 119.99874 * 180.02562 * 13 11 9 15 15 O 1.42101 * 104.27723 * 308.92686 * 14 13 11 16 16 O 1.42107 * 104.27512 * 181.06873 * 14 13 11 17 17 C 1.81396 * 104.44904 * 65.00245 * 14 13 11 18 18 C 1.50702 * 109.46987 * 179.97438 * 17 14 13 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 14 20 20 C 1.37884 * 119.99942 * 179.71878 * 18 17 14 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 C 1.54713 * 101.95800 * 344.63212 * 9 5 4 27 27 O 1.36139 * 129.89395 * 180.96612 * 4 3 2 28 28 H 1.08997 * 109.47551 * 270.02003 * 1 2 3 29 29 H 1.09000 * 109.47346 * 30.02376 * 1 2 3 30 30 H 1.09008 * 109.47152 * 150.01960 * 1 2 3 31 31 H 1.08005 * 119.87268 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.01224 * 180.31410 * 6 5 4 33 33 H 1.09001 * 109.47458 * 269.97749 * 8 7 2 34 34 H 1.08995 * 109.47188 * 29.98135 * 8 7 2 35 35 H 1.09003 * 109.47044 * 149.98385 * 8 7 2 36 36 H 0.97005 * 120.00001 * 0.02562 * 13 11 9 37 37 H 1.09004 * 109.47425 * 59.99805 * 17 14 13 38 38 H 1.08994 * 109.47218 * 299.99530 * 17 14 13 39 39 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 40 40 H 1.08999 * 110.74985 * 143.60093 * 26 9 5 41 41 H 1.09001 * 110.74332 * 266.94656 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1969 0.0000 4 6 3.5855 1.2070 -0.0005 5 6 4.2652 -0.0046 -0.0072 6 6 3.5784 -1.1981 -0.0033 7 6 2.1944 -1.1994 0.0005 8 6 1.4396 -2.5037 0.0044 9 6 5.7471 0.3173 -0.0192 10 1 6.1838 0.1786 0.9698 11 6 6.4708 -0.5151 -1.0460 12 8 5.8661 -1.3491 -1.6860 13 7 7.7900 -0.3326 -1.2532 14 16 8.5850 -1.2468 -2.3821 15 8 8.2344 -2.5854 -2.0591 16 8 9.9331 -0.8037 -2.3055 17 6 7.8435 -0.7584 -3.9639 18 6 8.4927 -1.5313 -5.0829 19 1 9.2731 -2.2453 -4.8644 20 6 8.0861 -1.3316 -6.3852 21 7 8.6489 -2.0101 -7.3612 22 14 6.7359 -0.0973 -6.7631 23 1 7.3396 1.2370 -7.0090 24 1 5.9905 -0.5336 -7.9712 25 1 5.8042 -0.0141 -5.6098 26 6 5.7473 1.8119 -0.4190 27 8 4.4511 2.2576 0.0170 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5136 31 1 1.6483 2.1295 -0.0004 32 1 4.1195 -2.1327 -0.0035 33 1 1.2602 -2.8166 1.0330 34 1 0.4861 -2.3732 -0.5072 35 1 2.0267 -3.2647 -0.5096 36 1 8.2737 0.3343 -0.7411 37 1 7.9971 0.3089 -4.1231 38 1 6.7750 -0.9730 -3.9459 39 1 8.3630 -1.8693 -8.2773 40 1 6.5376 2.3512 0.1032 41 1 5.8507 1.9227 -1.4984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835408602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:44 Heat of formation + Delta-G solvation = -118.175584 kcal Electronic energy + Delta-G solvation = -27591.461992 eV Core-core repulsion = 23564.054753 eV Total energy + Delta-G solvation = -4027.407238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73156 -39.61148 -38.34713 -36.45235 -35.37554 -34.44487 -33.48771 -33.29998 -32.15954 -31.18652 -29.87329 -27.20307 -26.58105 -24.45097 -23.11834 -22.57249 -21.44318 -20.55873 -19.36876 -18.07824 -17.70995 -17.34521 -16.76574 -16.60069 -15.93741 -15.85602 -15.29345 -14.96981 -14.82227 -14.48527 -14.27341 -14.24346 -14.01219 -13.78150 -13.23037 -12.95567 -12.76517 -12.64471 -12.55156 -12.45738 -12.27692 -12.20066 -12.02946 -11.72041 -11.49009 -11.48151 -11.39204 -10.96402 -10.90062 -10.81264 -10.76078 -10.40331 -10.15820 -9.92420 -9.48732 -8.89348 -8.86983 -8.15767 -6.35706 -4.45521 0.74319 1.07975 1.24812 2.03834 2.88384 2.96769 3.12210 3.21837 3.23122 3.48788 3.86835 4.12967 4.18476 4.19344 4.38933 4.60790 4.67470 4.74137 4.79727 4.90456 5.02045 5.02843 5.04631 5.06289 5.17992 5.25765 5.31528 5.46100 5.51809 5.59590 5.66440 5.83788 5.98719 6.09493 6.11668 6.23466 6.24982 6.41026 6.52758 6.70134 6.98475 7.11439 7.46100 7.95260 8.54166 9.18827 10.75127 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.003844 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.754366 B = 7281.644995 C = 8001.645410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.139 4.139 4 C 0.106 3.894 5 C -0.161 4.161 6 C -0.036 4.036 7 C -0.117 4.117 8 C -0.112 4.112 9 C -0.101 4.101 10 H 0.131 0.869 11 C 0.541 3.459 12 O -0.470 6.470 13 N -1.061 6.061 14 S 2.576 3.424 15 O -0.942 6.942 16 O -0.957 6.957 17 C -0.458 4.458 18 C -0.534 4.534 19 H 0.087 0.913 20 C 0.092 3.908 21 N -0.877 5.877 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.061 3.939 27 O -0.298 6.298 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.427 0.573 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.273 0.727 40 H 0.121 0.879 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.922 8.628 17.866 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.049 4.049 3 C -0.157 4.157 4 C 0.061 3.939 5 C -0.162 4.162 6 C -0.054 4.054 7 C -0.117 4.117 8 C -0.168 4.168 9 C -0.124 4.124 10 H 0.149 0.851 11 C 0.325 3.675 12 O -0.339 6.339 13 N -0.822 5.822 14 S 2.677 3.323 15 O -0.932 6.932 16 O -0.948 6.948 17 C -0.594 4.594 18 C -0.573 4.573 19 H 0.105 0.895 20 C -0.115 4.115 21 N -0.513 5.513 22 Si 0.706 3.294 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.014 4.014 27 O -0.212 6.212 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.261 0.739 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.139 0.861 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.726 7.554 17.488 23.480 hybrid contribution -0.392 1.285 -0.416 1.407 sum -14.118 8.839 17.072 23.852 Atomic orbital electron populations 1.20871 0.90645 1.03214 1.02529 1.19451 0.96004 0.91578 0.97916 1.19987 0.89564 0.98544 1.07644 1.19433 0.91418 0.85716 0.97320 1.20105 0.92423 0.94286 1.09433 1.20275 0.92987 0.97001 0.95100 1.19640 0.93059 0.95164 1.03822 1.20788 0.99989 0.93889 1.02174 1.21645 0.94125 0.96011 1.00650 0.85127 1.20015 0.81183 0.82937 0.83316 1.90932 1.65475 1.31590 1.45898 1.55605 1.18771 1.53242 1.54538 1.06406 0.74398 0.74491 0.77039 1.93555 1.83651 1.33519 1.82464 1.93552 1.32530 1.82122 1.86611 1.28100 1.09500 1.06823 1.14930 1.20011 1.22802 1.25151 0.89361 0.89470 1.24842 0.95859 0.95346 0.95474 1.69854 1.41262 1.39852 1.00296 0.86758 0.82292 0.81573 0.78819 1.19523 1.20394 1.18611 1.23860 0.84907 0.90919 1.01717 1.86847 1.19436 1.32496 1.82395 0.90860 0.91420 0.90716 0.85393 0.85049 0.91322 0.91182 0.91242 0.73908 0.90134 0.88523 0.91734 0.86129 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.59 36.00 0.35 -0.50 16 2 C -0.05 -0.52 5.87 -104.72 -0.61 -1.14 16 3 C -0.14 -1.57 9.71 -39.31 -0.38 -1.95 16 4 C 0.11 1.34 7.04 -38.96 -0.27 1.06 16 5 C -0.16 -2.10 5.41 -104.10 -0.56 -2.67 16 6 C -0.04 -0.47 8.73 -39.72 -0.35 -0.82 16 7 C -0.12 -1.34 5.89 -104.56 -0.62 -1.95 16 8 C -0.11 -1.00 9.61 36.00 0.35 -0.66 16 9 C -0.10 -1.12 3.52 -91.56 -0.32 -1.44 16 10 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 11 C 0.54 7.99 6.80 -10.99 -0.07 7.91 16 12 O -0.47 -8.93 13.20 -11.58 -0.15 -9.08 16 13 N -1.06 -14.79 5.59 31.22 0.17 -14.61 16 14 S 2.58 52.25 5.03 -107.50 -0.54 51.71 16 15 O -0.94 -22.41 17.04 -64.79 -1.10 -23.51 16 16 O -0.96 -20.70 18.08 -57.54 -1.04 -21.74 16 17 C -0.46 -10.45 4.71 36.01 0.17 -10.28 16 18 C -0.53 -15.04 9.68 -34.44 -0.33 -15.37 16 19 H 0.09 2.63 7.96 -52.49 -0.42 2.21 16 20 C 0.09 2.61 5.47 -17.82 -0.10 2.51 16 21 N -0.88 -26.13 13.96 55.43 0.77 -25.35 16 22 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 26 C 0.06 0.57 7.54 38.06 0.29 0.86 16 27 O -0.30 -3.49 11.10 -20.18 -0.22 -3.71 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.07 0.49 5.94 -51.92 -0.31 0.19 16 31 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.13 1.77 7.73 -52.49 -0.41 1.36 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.53 5.94 -51.93 -0.31 0.22 16 35 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.43 3.84 8.79 -34.47 -0.30 3.54 16 37 H 0.08 1.61 7.58 -51.92 -0.39 1.22 16 38 H 0.10 2.21 6.24 -51.93 -0.32 1.89 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16 LS Contribution 354.98 15.07 5.35 5.35 Total: -1.00 -37.56 354.98 -8.90 -46.46 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.99 Total: 2.81 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -2.48 Total: -24.43 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.95 Total: -39.96 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -2.52 Total: -58.05 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Atomic # 16 Polarization: 52.25 SS G_CDS: -0.54 Total: 51.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.56 -8.90 -46.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835408602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.717 kcal (2) G-P(sol) polarization free energy of solvation -37.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds