Wall clock time and date at job start Tue Mar 31 2020 22:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37974 * 119.82828 * 2 1 4 4 C 1.39234 * 120.24198 * 180.02562 * 3 2 1 5 5 C 1.38922 * 118.87616 * 0.29091 * 4 3 2 6 6 C 1.37698 * 120.78990 * 359.51843 * 5 4 3 7 7 C 1.38245 * 119.82005 * 179.97438 * 2 1 3 8 8 C 1.50694 * 120.12055 * 359.85368 * 7 2 1 9 9 C 1.51649 * 107.03776 * 179.48571 * 5 4 3 10 10 H 1.09001 * 110.93867 * 102.80111 * 9 5 4 11 11 C 1.50698 * 110.94255 * 226.45208 * 9 5 4 12 12 O 1.21277 * 119.99755 * 356.99141 * 11 9 5 13 13 N 1.34775 * 120.00150 * 176.99052 * 11 9 5 14 14 S 1.65598 * 119.99874 * 180.02562 * 13 11 9 15 15 O 1.42101 * 104.27723 * 308.92686 * 14 13 11 16 16 O 1.42107 * 104.27512 * 181.06873 * 14 13 11 17 17 C 1.81396 * 104.44904 * 65.00245 * 14 13 11 18 18 C 1.50702 * 109.46987 * 179.97438 * 17 14 13 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 14 20 20 C 1.37884 * 119.99942 * 179.71878 * 18 17 14 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 C 1.54713 * 101.95800 * 344.63212 * 9 5 4 27 27 O 1.36139 * 129.89395 * 180.96612 * 4 3 2 28 28 H 1.08997 * 109.47551 * 270.02003 * 1 2 3 29 29 H 1.09000 * 109.47346 * 30.02376 * 1 2 3 30 30 H 1.09008 * 109.47152 * 150.01960 * 1 2 3 31 31 H 1.08005 * 119.87268 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.01224 * 180.31410 * 6 5 4 33 33 H 1.09001 * 109.47458 * 269.97749 * 8 7 2 34 34 H 1.08995 * 109.47188 * 29.98135 * 8 7 2 35 35 H 1.09003 * 109.47044 * 149.98385 * 8 7 2 36 36 H 0.97005 * 120.00001 * 0.02562 * 13 11 9 37 37 H 1.09004 * 109.47425 * 59.99805 * 17 14 13 38 38 H 1.08994 * 109.47218 * 299.99530 * 17 14 13 39 39 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 40 40 H 1.08999 * 110.74985 * 143.60093 * 26 9 5 41 41 H 1.09001 * 110.74332 * 266.94656 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1969 0.0000 4 6 3.5855 1.2070 -0.0005 5 6 4.2652 -0.0046 -0.0072 6 6 3.5784 -1.1981 -0.0033 7 6 2.1944 -1.1994 0.0005 8 6 1.4396 -2.5037 0.0044 9 6 5.7471 0.3173 -0.0192 10 1 6.1838 0.1786 0.9698 11 6 6.4708 -0.5151 -1.0460 12 8 5.8661 -1.3491 -1.6860 13 7 7.7900 -0.3326 -1.2532 14 16 8.5850 -1.2468 -2.3821 15 8 8.2344 -2.5854 -2.0591 16 8 9.9331 -0.8037 -2.3055 17 6 7.8435 -0.7584 -3.9639 18 6 8.4927 -1.5313 -5.0829 19 1 9.2731 -2.2453 -4.8644 20 6 8.0861 -1.3316 -6.3852 21 7 8.6489 -2.0101 -7.3612 22 14 6.7359 -0.0973 -6.7631 23 1 7.3396 1.2370 -7.0090 24 1 5.9905 -0.5336 -7.9712 25 1 5.8042 -0.0141 -5.6098 26 6 5.7473 1.8119 -0.4190 27 8 4.4511 2.2576 0.0170 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5136 31 1 1.6483 2.1295 -0.0004 32 1 4.1195 -2.1327 -0.0035 33 1 1.2602 -2.8166 1.0330 34 1 0.4861 -2.3732 -0.5072 35 1 2.0267 -3.2647 -0.5096 36 1 8.2737 0.3343 -0.7411 37 1 7.9971 0.3089 -4.1231 38 1 6.7750 -0.9730 -3.9459 39 1 8.3630 -1.8693 -8.2773 40 1 6.5376 2.3512 0.1032 41 1 5.8507 1.9227 -1.4984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835408602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:43 Heat of formation + Delta-G solvation = -147.046973 kcal Electronic energy + Delta-G solvation = -27592.713949 eV Core-core repulsion = 23564.054753 eV Total energy + Delta-G solvation = -4028.659196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.63561 -40.78559 -39.14840 -38.19855 -37.14194 -35.77078 -35.38769 -34.33490 -32.94422 -31.99255 -31.86117 -27.96046 -27.29790 -25.55587 -25.04881 -23.40826 -22.46766 -21.48841 -20.83080 -19.66565 -19.09685 -18.47223 -18.16443 -17.60919 -17.53640 -16.87787 -16.43953 -16.33952 -16.27176 -16.02194 -15.24066 -15.12133 -14.91559 -14.77853 -14.65377 -14.41932 -14.08773 -13.72325 -13.67797 -13.55882 -13.34903 -13.28491 -13.19690 -13.15087 -12.95526 -12.81154 -12.69508 -12.40384 -12.16921 -12.13041 -11.93952 -11.75874 -11.61256 -11.40301 -11.28113 -10.98072 -9.74119 -8.99426 -8.50522 -6.67215 -0.90695 0.21829 0.36760 0.85740 1.26675 1.31406 1.41483 1.51729 2.15478 2.21702 2.56743 2.67299 2.80555 2.97602 3.10289 3.35117 3.40997 3.83133 3.88628 3.95945 3.99255 4.25832 4.29495 4.32325 4.33866 4.42216 4.53006 4.54517 4.72530 4.75328 4.79408 4.93564 5.03155 5.11939 5.13586 5.23106 5.29688 5.39228 5.61798 5.63770 5.72187 5.75760 6.16268 6.31806 6.36651 7.01386 8.64619 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.003844 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.754366 B = 7281.644995 C = 8001.645410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 C -0.147 4.147 4 C 0.093 3.907 5 C -0.184 4.184 6 C -0.060 4.060 7 C -0.128 4.128 8 C -0.111 4.111 9 C -0.092 4.092 10 H 0.166 0.834 11 C 0.542 3.458 12 O -0.514 6.514 13 N -1.036 6.036 14 S 2.610 3.390 15 O -0.982 6.982 16 O -0.972 6.972 17 C -0.473 4.473 18 C -0.556 4.556 19 H 0.045 0.955 20 C 0.031 3.969 21 N -0.927 5.927 22 Si 0.946 3.054 23 H -0.246 1.246 24 H -0.275 1.275 25 H -0.247 1.247 26 C 0.058 3.942 27 O -0.303 6.303 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.452 0.548 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.278 0.722 40 H 0.168 0.832 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.901 11.632 19.520 27.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.165 4.165 4 C 0.048 3.952 5 C -0.185 4.185 6 C -0.078 4.078 7 C -0.128 4.128 8 C -0.167 4.167 9 C -0.115 4.115 10 H 0.184 0.816 11 C 0.329 3.671 12 O -0.386 6.386 13 N -0.803 5.803 14 S 2.709 3.291 15 O -0.972 6.972 16 O -0.963 6.963 17 C -0.607 4.607 18 C -0.595 4.595 19 H 0.063 0.937 20 C -0.172 4.172 21 N -0.564 5.564 22 Si 0.766 3.234 23 H -0.169 1.169 24 H -0.200 1.200 25 H -0.171 1.171 26 C -0.016 4.016 27 O -0.217 6.217 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.164 0.836 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.292 0.708 37 H 0.133 0.867 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.186 0.814 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.665 10.585 19.156 26.915 hybrid contribution 0.232 0.298 -0.851 0.931 sum -15.434 10.882 18.305 26.300 Atomic orbital electron populations 1.20948 0.88227 1.04117 1.03799 1.19838 0.97758 0.90921 0.96603 1.20349 0.89493 0.99604 1.07072 1.19648 0.92093 0.85743 0.97764 1.20355 0.93615 0.94447 1.10090 1.20366 0.94009 0.96731 0.96740 1.19968 0.92754 0.96653 1.03451 1.20834 1.00188 0.92508 1.03198 1.21766 0.92680 0.96349 1.00684 0.81634 1.20772 0.80744 0.82419 0.83196 1.90925 1.66265 1.33678 1.47755 1.54937 1.18755 1.53321 1.53330 1.05049 0.73729 0.73804 0.76526 1.93505 1.84244 1.36532 1.82951 1.93526 1.33615 1.82292 1.86830 1.28157 1.09223 1.08092 1.15271 1.20279 1.22421 1.25165 0.91629 0.93670 1.25920 0.98552 0.97566 0.95141 1.69993 1.43343 1.42019 1.01037 0.85724 0.79048 0.79546 0.79052 1.16928 1.20008 1.17079 1.24218 0.85214 0.89769 1.02445 1.86839 1.20110 1.32309 1.82475 0.89262 0.90353 0.89988 0.83613 0.86662 0.89838 0.89539 0.92473 0.70763 0.86678 0.88390 0.91271 0.81422 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.59 71.23 0.68 -0.68 16 2 C -0.05 -0.99 5.87 -19.93 -0.12 -1.10 16 3 C -0.15 -3.02 9.71 22.45 0.22 -2.81 16 4 C 0.09 2.16 7.04 22.67 0.16 2.32 16 5 C -0.18 -4.58 5.41 -19.53 -0.11 -4.69 16 6 C -0.06 -1.60 8.73 22.18 0.19 -1.40 16 7 C -0.13 -2.85 5.89 -19.83 -0.12 -2.97 16 8 C -0.11 -1.90 9.61 71.23 0.68 -1.21 16 9 C -0.09 -1.80 3.52 -11.40 -0.04 -1.84 16 10 H 0.17 2.03 8.14 -2.39 -0.02 2.01 16 11 C 0.54 15.14 6.80 87.66 0.60 15.74 16 12 O -0.51 -19.56 13.20 13.37 0.18 -19.39 16 13 N -1.04 -26.70 5.59 -173.54 -0.97 -27.67 16 14 S 2.61 105.22 5.03 -56.49 -0.28 104.94 16 15 O -0.98 -47.82 17.04 -120.72 -2.06 -49.88 16 16 O -0.97 -41.48 18.08 -127.65 -2.31 -43.79 16 17 C -0.47 -21.40 4.71 71.24 0.34 -21.07 16 18 C -0.56 -32.22 9.68 25.60 0.25 -31.97 16 19 H 0.05 2.89 7.96 -2.91 -0.02 2.87 16 20 C 0.03 1.76 5.47 84.66 0.46 2.22 16 21 N -0.93 -56.94 13.96 21.45 0.30 -56.65 16 22 Si 0.95 42.19 27.47 68.60 1.88 44.07 16 23 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.25 -10.36 6.54 99.48 0.65 -9.71 16 26 C 0.06 0.87 7.54 72.57 0.55 1.42 16 27 O -0.30 -6.21 11.10 -95.14 -1.06 -7.26 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 30 H 0.08 0.86 5.94 -2.38 -0.01 0.84 16 31 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.12 3.29 7.73 -2.91 -0.02 3.27 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.16 5.94 -2.39 -0.01 1.15 16 35 H 0.06 1.10 8.09 -2.39 -0.02 1.08 16 36 H 0.45 6.57 8.79 -96.74 -0.85 5.72 16 37 H 0.12 4.36 7.58 -2.39 -0.02 4.34 16 38 H 0.10 4.44 6.24 -2.39 -0.01 4.42 16 39 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.17 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 1.31 7.91 -2.39 -0.02 1.29 16 Total: -1.00 -85.85 354.98 -0.39 -86.24 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.18 Total: 17.42 kcal Atomic # 6 Polarization: -51.79 SS G_CDS: 3.75 Total: -48.04 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -0.67 Total: -84.32 kcal Atomic # 8 Polarization: -115.07 SS G_CDS: -5.24 Total: -120.32 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.07 kcal Atomic # 16 Polarization: 105.22 SS G_CDS: -0.28 Total: 104.94 kcal Total: -85.85 -0.39 -86.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835408602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.806 kcal (2) G-P(sol) polarization free energy of solvation -85.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds