Wall clock time and date at job start Tue Mar 31 2020 22:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48507 * 109.46694 * 269.99835 * 3 2 1 5 5 H 1.48495 * 109.47319 * 29.99372 * 3 2 1 6 6 H 1.48493 * 109.47274 * 150.00000 * 3 2 1 7 7 C 1.37879 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99382 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00049 * 359.97438 * 7 2 1 10 10 S 1.81396 * 109.47025 * 179.97438 * 9 7 2 11 11 O 1.42105 * 110.54145 * 68.38089 * 10 9 7 12 12 O 1.42096 * 110.54593 * 291.62664 * 10 9 7 13 13 N 1.65605 * 104.45145 * 180.02562 * 10 9 7 14 14 C 1.34778 * 119.99481 * 64.99937 * 13 10 9 15 15 O 1.21582 * 120.00138 * 0.02562 * 14 13 10 16 16 C 1.47597 * 119.99545 * 179.97438 * 14 13 10 17 17 C 1.39741 * 120.08755 * 180.02562 * 16 14 13 18 18 C 1.37696 * 119.90966 * 179.74829 * 17 16 14 19 19 C 1.38995 * 120.09503 * 0.23563 * 18 17 16 20 20 O 1.35703 * 119.91751 * 180.02562 * 19 18 17 21 21 C 1.42903 * 117.00076 * 6.02184 * 20 19 18 22 22 C 1.53776 * 113.61367 * 256.04027 * 21 20 19 23 23 C 1.53954 * 87.01911 * 220.04442 * 22 21 20 24 24 C 1.53777 * 113.61518 * 158.42824 * 21 20 19 25 25 C 1.39006 * 120.17125 * 0.02562 * 19 18 17 26 26 C 1.37700 * 120.09126 * 0.02562 * 25 19 18 27 27 H 0.97003 * 119.99574 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47061 * 59.99928 * 9 7 2 29 29 H 1.08998 * 109.47191 * 300.00036 * 9 7 2 30 30 H 0.97002 * 120.00088 * 245.00661 * 13 10 9 31 31 H 1.07997 * 120.04314 * 0.02965 * 17 16 14 32 32 H 1.08001 * 119.95458 * 180.25782 * 18 17 16 33 33 H 1.09001 * 112.84377 * 27.23176 * 21 20 19 34 34 H 1.08999 * 113.61978 * 334.56538 * 22 21 20 35 35 H 1.08997 * 113.61589 * 105.47114 * 22 21 20 36 36 H 1.09001 * 113.54266 * 270.81423 * 23 22 21 37 37 H 1.09002 * 113.66999 * 139.92809 * 23 22 21 38 38 H 1.08995 * 113.61672 * 254.53096 * 24 21 20 39 39 H 1.08999 * 113.61311 * 25.35098 * 24 21 20 40 40 H 1.07997 * 119.95242 * 180.02562 * 25 19 18 41 41 H 1.07999 * 120.04567 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 16 2.4299 -3.8779 0.0014 11 8 3.1275 -3.9377 1.2380 12 8 3.1257 -3.9388 -1.2360 13 7 1.4796 -5.2341 0.0020 14 6 0.6884 -5.5030 -1.0555 15 8 0.6728 -4.7501 -2.0100 16 6 -0.1581 -6.7120 -1.0552 17 6 -0.9787 -6.9930 -2.1509 18 6 -1.7631 -8.1247 -2.1489 19 6 -1.7432 -8.9846 -1.0571 20 8 -2.5173 -10.0992 -1.0592 21 6 -3.2244 -10.3957 -2.2652 22 6 -4.7243 -10.0633 -2.1974 23 6 -4.9669 -11.3705 -2.9737 24 6 -3.6349 -11.8723 -2.3913 25 6 -0.9324 -8.7059 0.0371 26 6 -0.1458 -7.5756 0.0434 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5574 -0.8880 29 1 0.6248 -2.5563 0.8919 30 1 1.4922 -5.8349 0.7635 31 1 -0.9942 -6.3257 -2.9999 32 1 -2.3944 -8.3446 -2.9971 33 1 -2.7297 -10.0026 -3.1533 34 1 -5.1289 -10.0750 -1.1854 35 1 -4.9984 -9.1670 -2.7536 36 1 -4.9499 -11.2437 -4.0561 37 1 -5.8344 -11.9315 -2.6258 38 1 -3.0310 -12.4341 -3.1038 39 1 -3.7397 -12.3798 -1.4324 40 1 -0.9194 -9.3767 0.8833 41 1 0.4835 -7.3596 0.8940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835410235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:20 Heat of formation + Delta-G solvation = -101.127170 kcal Electronic energy + Delta-G solvation = -26297.429200 eV Core-core repulsion = 22270.761237 eV Total energy + Delta-G solvation = -4026.667963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91330 -39.93316 -38.36127 -36.50310 -36.16362 -35.15740 -34.21218 -33.33661 -31.32348 -30.33940 -29.03576 -26.22799 -26.05370 -24.08993 -23.47472 -22.89592 -21.18079 -20.09285 -19.36787 -18.75991 -18.10828 -17.23844 -16.55422 -16.21303 -16.02219 -15.69414 -15.46812 -15.31318 -14.83321 -14.60735 -14.52920 -14.26803 -14.16347 -13.80931 -13.01599 -12.96746 -12.81446 -12.57914 -12.51576 -12.14836 -11.96531 -11.86416 -11.67916 -11.45116 -11.27850 -11.20854 -11.17782 -10.90014 -10.87326 -10.72814 -10.63632 -10.47245 -10.07045 -9.79835 -9.34974 -9.15400 -8.69289 -8.51057 -6.31494 -4.42591 0.65840 1.05595 1.08618 2.61269 2.79765 3.18877 3.23601 3.29006 3.34212 3.62969 3.98259 4.01179 4.22993 4.26005 4.27163 4.39163 4.49676 4.52703 4.64965 4.78153 4.98589 5.00095 5.09400 5.14149 5.21426 5.22157 5.22274 5.33781 5.37014 5.41515 5.51868 5.70307 5.76151 5.91467 6.02222 6.11220 6.36423 6.61564 6.79006 7.02155 7.06492 7.43460 7.74423 7.80170 8.58603 9.24573 10.80296 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022502 B = 0.002316 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.041286 B =12086.529385 C =12781.666381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.071 0.929 9 C -0.404 4.404 10 S 2.555 3.445 11 O -0.968 6.968 12 O -0.952 6.952 13 N -1.058 6.058 14 C 0.582 3.418 15 O -0.487 6.487 16 C -0.176 4.176 17 C -0.011 4.011 18 C -0.220 4.220 19 C 0.157 3.843 20 O -0.299 6.299 21 C 0.050 3.950 22 C -0.157 4.157 23 C -0.141 4.141 24 C -0.131 4.131 25 C -0.162 4.162 26 C -0.040 4.040 27 H 0.269 0.731 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.422 0.578 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.138 0.862 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.673 -23.632 -2.617 26.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.130 4.130 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.089 0.911 9 C -0.541 4.541 10 S 2.657 3.343 11 O -0.959 6.959 12 O -0.942 6.942 13 N -0.818 5.818 14 C 0.369 3.631 15 O -0.359 6.359 16 C -0.181 4.181 17 C -0.030 4.030 18 C -0.238 4.238 19 C 0.111 3.889 20 O -0.212 6.212 21 C -0.006 4.006 22 C -0.195 4.195 23 C -0.178 4.178 24 C -0.168 4.168 25 C -0.180 4.180 26 C -0.059 4.059 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.257 0.743 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.156 0.844 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.916 -23.197 -3.185 25.427 hybrid contribution -0.308 0.764 0.304 0.878 sum -10.224 -22.433 -2.881 24.821 Atomic orbital electron populations 1.69964 1.06264 1.27724 1.47340 1.24928 0.95041 0.99585 0.93419 0.86333 0.79939 0.81640 0.78804 1.19837 1.20611 1.19069 1.20289 0.92753 0.88468 1.55885 0.91108 1.27600 1.09879 1.09114 1.07465 1.07103 0.77217 0.75876 0.74069 1.93520 1.71111 1.85963 1.45331 1.93528 1.70836 1.85168 1.44652 1.55431 1.56116 1.43849 1.26379 1.18004 0.78293 0.85469 0.81299 1.90981 1.63998 1.48392 1.32558 1.19824 1.03144 0.97614 0.97518 1.21139 0.90421 0.94611 0.96859 1.21221 1.05573 0.97301 0.99753 1.19300 0.89553 0.85879 0.94137 1.86130 1.57502 1.40299 1.37257 1.24320 0.91548 0.97726 0.87016 1.23556 0.95178 0.98672 1.02087 1.22695 0.97798 0.97152 1.00184 1.23182 0.96769 0.94481 1.02363 1.20344 0.99250 0.99709 0.98738 1.21165 0.95872 0.92079 0.96755 0.92164 0.88304 0.89642 0.74325 0.83841 0.84650 0.87915 0.88805 0.90568 0.89593 0.90253 0.90391 0.88757 0.84396 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.28 13.29 55.43 0.74 -24.54 16 2 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 3 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -15.09 9.13 -34.44 -0.31 -15.41 16 8 H 0.07 1.95 7.71 -52.49 -0.40 1.54 16 9 C -0.40 -10.15 5.64 36.00 0.20 -9.94 16 10 S 2.55 56.00 5.03 -107.50 -0.54 55.46 16 11 O -0.97 -22.19 18.08 -57.54 -1.04 -23.23 16 12 O -0.95 -23.92 17.03 -64.80 -1.10 -25.03 16 13 N -1.06 -17.53 5.55 30.47 0.17 -17.36 16 14 C 0.58 10.08 7.50 -12.44 -0.09 9.99 16 15 O -0.49 -10.32 14.44 -11.86 -0.17 -10.49 16 16 C -0.18 -2.38 5.88 -104.96 -0.62 -2.99 16 17 C -0.01 -0.14 9.58 -39.22 -0.38 -0.52 16 18 C -0.22 -2.22 8.99 -39.50 -0.35 -2.57 16 19 C 0.16 1.60 6.69 -39.02 -0.26 1.34 16 20 O -0.30 -2.79 10.13 -18.81 -0.19 -2.98 16 21 C 0.05 0.34 3.60 -25.92 -0.09 0.25 16 22 C -0.16 -0.93 7.93 -25.83 -0.20 -1.13 16 23 C -0.14 -0.62 8.09 -25.83 -0.21 -0.83 16 24 C -0.13 -0.69 7.92 -25.92 -0.21 -0.89 16 25 C -0.16 -1.58 9.97 -39.49 -0.39 -1.98 16 26 C -0.04 -0.42 9.53 -39.22 -0.37 -0.80 16 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.10 2.60 7.19 -51.92 -0.37 2.23 16 29 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 30 H 0.42 5.11 6.81 -34.48 -0.23 4.87 16 31 H 0.14 1.76 7.64 -52.49 -0.40 1.36 16 32 H 0.14 1.04 5.95 -52.49 -0.31 0.73 16 33 H 0.10 0.62 6.06 -51.93 -0.31 0.30 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.14 1.09 6.39 -52.49 -0.34 0.75 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -36.58 361.41 -10.00 -46.58 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.89 Total: 3.30 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -3.39 Total: -23.43 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.91 Total: -41.90 kcal Atomic # 8 Polarization: -59.23 SS G_CDS: -2.51 Total: -61.73 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 56.00 SS G_CDS: -0.54 Total: 55.46 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.58 -10.00 -46.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.549 kcal (2) G-P(sol) polarization free energy of solvation -36.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds