Wall clock time and date at job start Tue Mar 31 2020 22:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48507 * 109.46694 * 269.99835 * 3 2 1 5 5 H 1.48495 * 109.47319 * 29.99372 * 3 2 1 6 6 H 1.48493 * 109.47274 * 150.00000 * 3 2 1 7 7 C 1.37879 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99382 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00049 * 359.97438 * 7 2 1 10 10 S 1.81396 * 109.47025 * 179.97438 * 9 7 2 11 11 O 1.42105 * 110.54145 * 68.38089 * 10 9 7 12 12 O 1.42096 * 110.54593 * 291.62664 * 10 9 7 13 13 N 1.65605 * 104.45145 * 180.02562 * 10 9 7 14 14 C 1.34778 * 119.99481 * 64.99937 * 13 10 9 15 15 O 1.21582 * 120.00138 * 0.02562 * 14 13 10 16 16 C 1.47597 * 119.99545 * 179.97438 * 14 13 10 17 17 C 1.39741 * 120.08755 * 180.02562 * 16 14 13 18 18 C 1.37696 * 119.90966 * 179.74829 * 17 16 14 19 19 C 1.38995 * 120.09503 * 0.23563 * 18 17 16 20 20 O 1.35703 * 119.91751 * 180.02562 * 19 18 17 21 21 C 1.42903 * 117.00076 * 6.02184 * 20 19 18 22 22 C 1.53776 * 113.61367 * 256.04027 * 21 20 19 23 23 C 1.53954 * 87.01911 * 220.04442 * 22 21 20 24 24 C 1.53777 * 113.61518 * 158.42824 * 21 20 19 25 25 C 1.39006 * 120.17125 * 0.02562 * 19 18 17 26 26 C 1.37700 * 120.09126 * 0.02562 * 25 19 18 27 27 H 0.97003 * 119.99574 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47061 * 59.99928 * 9 7 2 29 29 H 1.08998 * 109.47191 * 300.00036 * 9 7 2 30 30 H 0.97002 * 120.00088 * 245.00661 * 13 10 9 31 31 H 1.07997 * 120.04314 * 0.02965 * 17 16 14 32 32 H 1.08001 * 119.95458 * 180.25782 * 18 17 16 33 33 H 1.09001 * 112.84377 * 27.23176 * 21 20 19 34 34 H 1.08999 * 113.61978 * 334.56538 * 22 21 20 35 35 H 1.08997 * 113.61589 * 105.47114 * 22 21 20 36 36 H 1.09001 * 113.54266 * 270.81423 * 23 22 21 37 37 H 1.09002 * 113.66999 * 139.92809 * 23 22 21 38 38 H 1.08995 * 113.61672 * 254.53096 * 24 21 20 39 39 H 1.08999 * 113.61311 * 25.35098 * 24 21 20 40 40 H 1.07997 * 119.95242 * 180.02562 * 25 19 18 41 41 H 1.07999 * 120.04567 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 16 2.4299 -3.8779 0.0014 11 8 3.1275 -3.9377 1.2380 12 8 3.1257 -3.9388 -1.2360 13 7 1.4796 -5.2341 0.0020 14 6 0.6884 -5.5030 -1.0555 15 8 0.6728 -4.7501 -2.0100 16 6 -0.1581 -6.7120 -1.0552 17 6 -0.9787 -6.9930 -2.1509 18 6 -1.7631 -8.1247 -2.1489 19 6 -1.7432 -8.9846 -1.0571 20 8 -2.5173 -10.0992 -1.0592 21 6 -3.2244 -10.3957 -2.2652 22 6 -4.7243 -10.0633 -2.1974 23 6 -4.9669 -11.3705 -2.9737 24 6 -3.6349 -11.8723 -2.3913 25 6 -0.9324 -8.7059 0.0371 26 6 -0.1458 -7.5756 0.0434 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5574 -0.8880 29 1 0.6248 -2.5563 0.8919 30 1 1.4922 -5.8349 0.7635 31 1 -0.9942 -6.3257 -2.9999 32 1 -2.3944 -8.3446 -2.9971 33 1 -2.7297 -10.0026 -3.1533 34 1 -5.1289 -10.0750 -1.1854 35 1 -4.9984 -9.1670 -2.7536 36 1 -4.9499 -11.2437 -4.0561 37 1 -5.8344 -11.9315 -2.6258 38 1 -3.0310 -12.4341 -3.1038 39 1 -3.7397 -12.3798 -1.4324 40 1 -0.9194 -9.3767 0.8833 41 1 0.4835 -7.3596 0.8940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835410235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:19 Heat of formation + Delta-G solvation = -126.999389 kcal Electronic energy + Delta-G solvation = -26298.551104 eV Core-core repulsion = 22270.761237 eV Total energy + Delta-G solvation = -4027.789867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78381 -41.02809 -39.16611 -38.10733 -37.16016 -37.06701 -35.70344 -35.42790 -32.17139 -31.29633 -31.08273 -26.68254 -26.62963 -25.67960 -25.04013 -23.65617 -22.33105 -20.92591 -20.55894 -19.72533 -19.34738 -18.99254 -18.33672 -17.53175 -17.04659 -16.78386 -16.59314 -16.47266 -16.22683 -16.03263 -15.88536 -15.36237 -15.17374 -14.63042 -14.50437 -14.14091 -13.78362 -13.66089 -13.59922 -13.49157 -13.41181 -13.25864 -13.21411 -13.10779 -12.75118 -12.55908 -12.45574 -12.22678 -12.07745 -11.87629 -11.84542 -11.47982 -11.34800 -11.22663 -11.08362 -10.80021 -10.17601 -9.36343 -8.43311 -6.62704 -0.76157 -0.32532 0.26151 1.36912 1.39473 1.40240 1.51322 1.59998 2.13131 2.29603 2.65613 2.77328 2.90866 3.14898 3.39865 3.50737 3.57345 3.70330 3.73408 3.86666 3.89802 3.93954 4.08437 4.26926 4.43148 4.50523 4.64665 4.74825 4.78516 4.79767 4.92291 5.00204 5.01710 5.05740 5.07880 5.20297 5.20872 5.28483 5.37122 5.56065 5.67009 5.75268 6.34670 6.43740 6.48628 7.08981 8.69782 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022502 B = 0.002316 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.041286 B =12086.529385 C =12781.666381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.568 4.568 8 H 0.069 0.931 9 C -0.421 4.421 10 S 2.602 3.398 11 O -0.975 6.975 12 O -0.983 6.983 13 N -1.041 6.041 14 C 0.580 3.420 15 O -0.534 6.534 16 C -0.200 4.200 17 C -0.022 4.022 18 C -0.217 4.217 19 C 0.162 3.838 20 O -0.304 6.304 21 C 0.035 3.965 22 C -0.161 4.161 23 C -0.133 4.133 24 C -0.128 4.128 25 C -0.162 4.162 26 C -0.032 4.032 27 H 0.275 0.725 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.443 0.557 31 H 0.134 0.866 32 H 0.158 0.842 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.163 0.837 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.159 -25.446 -2.052 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.607 4.607 8 H 0.087 0.913 9 C -0.556 4.556 10 S 2.702 3.298 11 O -0.966 6.966 12 O -0.974 6.974 13 N -0.806 5.806 14 C 0.371 3.629 15 O -0.410 6.410 16 C -0.205 4.205 17 C -0.041 4.041 18 C -0.235 4.235 19 C 0.116 3.884 20 O -0.217 6.217 21 C -0.020 4.020 22 C -0.198 4.198 23 C -0.170 4.170 24 C -0.166 4.166 25 C -0.180 4.180 26 C -0.051 4.051 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.284 0.716 31 H 0.152 0.848 32 H 0.175 0.825 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.181 0.819 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.415 -25.027 -2.586 27.231 hybrid contribution -0.292 1.111 0.122 1.155 sum -10.707 -23.916 -2.464 26.319 Atomic orbital electron populations 1.70050 1.07672 1.28983 1.47797 1.25909 0.96022 1.03341 0.92705 0.85385 0.79004 0.77283 0.79249 1.19171 1.19084 1.18208 1.20737 0.93167 0.90332 1.56451 0.91255 1.27657 1.10724 1.10719 1.06453 1.05401 0.76030 0.75410 0.72977 1.93501 1.71276 1.86310 1.45511 1.93485 1.71670 1.85836 1.46368 1.54852 1.55527 1.42704 1.27510 1.18666 0.77893 0.86102 0.80269 1.90956 1.65512 1.50235 1.34296 1.19620 1.04217 0.97064 0.99646 1.21183 0.90975 0.95418 0.96500 1.21371 1.05165 0.96316 1.00661 1.19515 0.89060 0.85858 0.94008 1.86148 1.57243 1.39626 1.38664 1.24685 0.91783 0.99094 0.86448 1.23575 0.94498 0.99663 1.02078 1.22703 0.97651 0.96028 1.00632 1.23205 0.97239 0.93492 1.02618 1.20644 0.98443 0.99538 0.99367 1.21416 0.95880 0.91440 0.96348 0.91636 0.90382 0.89506 0.71629 0.84776 0.82489 0.87079 0.89480 0.90377 0.88520 0.89498 0.89426 0.88974 0.81899 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.38 13.29 21.45 0.28 -53.10 16 2 C 0.02 1.34 5.46 84.65 0.46 1.80 16 3 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.57 -32.87 9.13 25.60 0.23 -32.63 16 8 H 0.07 3.90 7.71 -2.91 -0.02 3.87 16 9 C -0.42 -21.90 5.64 71.23 0.40 -21.50 16 10 S 2.60 115.40 5.03 -56.49 -0.28 115.12 16 11 O -0.98 -44.18 18.08 -127.65 -2.31 -46.49 16 12 O -0.98 -50.40 17.03 -120.71 -2.06 -52.45 16 13 N -1.04 -34.23 5.55 -175.77 -0.98 -35.20 16 14 C 0.58 20.42 7.50 86.71 0.65 21.07 16 15 O -0.53 -23.70 14.44 12.43 0.18 -23.52 16 16 C -0.20 -5.32 5.88 -20.08 -0.12 -5.44 16 17 C -0.02 -0.53 9.58 22.50 0.22 -0.31 16 18 C -0.22 -4.06 8.99 22.32 0.20 -3.86 16 19 C 0.16 2.94 6.69 22.64 0.15 3.09 16 20 O -0.30 -4.96 10.13 -90.23 -0.91 -5.88 16 21 C 0.04 0.40 3.60 31.12 0.11 0.52 16 22 C -0.16 -1.59 7.93 31.18 0.25 -1.35 16 23 C -0.13 -0.86 8.09 31.18 0.25 -0.61 16 24 C -0.13 -1.05 7.92 31.12 0.25 -0.80 16 25 C -0.16 -2.72 9.97 22.33 0.22 -2.50 16 26 C -0.03 -0.62 9.53 22.51 0.21 -0.41 16 27 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.08 4.35 7.19 -2.39 -0.02 4.33 16 29 H 0.09 4.36 8.14 -2.39 -0.02 4.34 16 30 H 0.44 10.05 6.81 -96.74 -0.66 9.39 16 31 H 0.13 3.45 7.64 -2.91 -0.02 3.43 16 32 H 0.16 2.14 5.95 -2.91 -0.02 2.12 16 33 H 0.11 1.07 6.06 -2.39 -0.01 1.06 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.44 8.14 -2.39 -0.02 0.43 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.16 2.10 6.39 -2.91 -0.02 2.08 16 Total: -1.00 -80.13 361.41 -0.14 -80.26 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.42 Total: 18.50 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 3.49 Total: -42.93 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -0.69 Total: -88.30 kcal Atomic # 8 Polarization: -123.24 SS G_CDS: -5.10 Total: -128.34 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 115.40 SS G_CDS: -0.28 Total: 115.12 kcal Total: -80.13 -0.14 -80.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.735 kcal (2) G-P(sol) polarization free energy of solvation -80.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds