Wall clock time and date at job start Tue Mar 31 2020 22:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38291 * 120.01365 * 2 1 4 4 C 1.37964 * 119.96291 * 180.11000 * 3 2 1 5 5 C 1.39149 * 120.21741 * 359.97438 * 4 3 2 6 6 C 1.38374 * 119.69066 * 359.82844 * 5 4 3 7 7 C 1.38110 * 120.01033 * 180.02562 * 2 1 3 8 8 C 1.50770 * 121.40350 * 180.50430 * 6 5 4 9 9 C 1.53066 * 109.70402 * 342.15443 * 8 6 5 10 10 C 1.53402 * 108.30397 * 48.15716 * 9 8 6 11 11 H 1.09003 * 109.67763 * 55.08977 * 10 9 8 12 12 C 1.50694 * 109.68505 * 175.60565 * 10 9 8 13 13 O 1.21286 * 120.00138 * 114.48017 * 12 10 9 14 14 N 1.34778 * 119.99995 * 294.48462 * 12 10 9 15 15 S 1.65601 * 119.99942 * 179.97438 * 14 12 10 16 16 O 1.42108 * 104.27527 * 308.92906 * 15 14 12 17 17 O 1.42098 * 104.27658 * 181.07092 * 15 14 12 18 18 C 1.81402 * 104.45063 * 64.99692 * 15 14 12 19 19 C 1.50700 * 109.47099 * 179.97438 * 18 15 14 20 20 H 1.08002 * 119.99770 * 0.02562 * 19 18 15 21 21 C 1.37871 * 120.00083 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00278 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47228 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46793 * 300.00001 * 23 21 19 26 26 H 1.48500 * 109.47000 * 60.00094 * 23 21 19 27 27 O 1.35842 * 118.50308 * 179.77872 * 5 4 3 28 28 H 1.09003 * 109.46916 * 90.00291 * 1 2 3 29 29 H 1.09000 * 109.47619 * 209.99966 * 1 2 3 30 30 H 1.09001 * 109.47295 * 330.00588 * 1 2 3 31 31 H 1.07998 * 120.01723 * 0.12639 * 3 2 1 32 32 H 1.08001 * 119.89268 * 179.97438 * 4 3 2 33 33 H 1.08002 * 119.83747 * 0.02562 * 7 2 1 34 34 H 1.08999 * 109.44111 * 102.19614 * 8 6 5 35 35 H 1.09008 * 109.43314 * 222.06802 * 8 6 5 36 36 H 1.09005 * 109.66882 * 288.47265 * 9 8 6 37 37 H 1.09000 * 109.72486 * 167.88049 * 9 8 6 38 38 H 0.96993 * 120.00358 * 0.02562 * 14 12 10 39 39 H 1.08994 * 109.47025 * 60.00385 * 18 15 14 40 40 H 1.08998 * 109.47443 * 300.00153 * 18 15 14 41 41 H 0.97005 * 119.99661 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1986 1.1975 0.0000 4 6 3.5783 1.1963 -0.0023 5 6 4.2775 -0.0068 -0.0041 6 6 3.5827 -1.2034 0.0001 7 6 2.1977 -1.1959 -0.0005 8 6 4.3010 -2.5289 0.0097 9 6 5.7544 -2.3315 -0.4281 10 6 6.3394 -1.1532 0.3609 11 1 6.2196 -1.3314 1.4295 12 6 7.8021 -0.9989 0.0329 13 8 8.1927 -0.0066 -0.5447 14 7 8.6762 -1.9637 0.3815 15 16 10.2835 -1.7945 0.0206 16 8 10.3002 -1.4777 -1.3647 17 8 10.8794 -2.9897 0.5060 18 6 10.8211 -0.3694 1.0058 19 6 12.2857 -0.1129 0.7605 20 1 12.8378 -0.7438 0.0796 21 6 12.9209 0.9272 1.4052 22 7 12.2488 1.6951 2.2348 23 14 14.7362 1.2457 1.1006 24 1 15.1763 2.4122 1.9072 25 1 15.5214 0.0477 1.4924 26 1 14.9537 1.5307 -0.3405 27 8 5.6354 0.0326 -0.0109 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6592 2.1331 0.0021 32 1 4.1174 2.1321 -0.0027 33 1 1.6552 -2.1298 -0.0014 34 1 4.2796 -2.9459 1.0165 35 1 3.8052 -3.2151 -0.6771 36 1 5.7896 -2.1126 -1.4954 37 1 6.3276 -3.2346 -0.2188 38 1 8.3639 -2.7575 0.8431 39 1 10.6615 -0.5781 2.0636 40 1 10.2447 0.5097 0.7179 41 1 11.3060 1.5300 2.3927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835410634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:40 Heat of formation + Delta-G solvation = -137.848815 kcal Electronic energy + Delta-G solvation = -27015.996512 eV Core-core repulsion = 22987.736178 eV Total energy + Delta-G solvation = -4028.260333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28598 -39.73928 -37.86613 -36.42762 -35.36676 -34.95335 -34.12922 -33.72786 -32.51014 -30.84715 -28.65503 -27.98443 -26.05403 -23.87384 -23.46144 -22.71539 -21.87898 -19.96368 -19.52094 -18.29165 -17.99810 -17.32542 -17.04659 -16.64304 -15.92704 -15.49529 -15.11753 -14.95518 -14.84466 -14.61940 -14.39650 -14.11483 -13.98341 -13.81183 -13.53168 -13.28514 -12.95408 -12.87825 -12.63755 -12.42521 -12.14756 -11.99644 -11.72752 -11.68157 -11.47759 -11.44205 -11.37370 -11.22571 -10.81901 -10.78682 -10.69852 -10.20338 -10.02913 -9.58924 -9.12051 -9.06123 -8.65361 -8.26153 -6.70853 -4.48560 0.77879 1.04203 1.13812 2.08019 2.51693 3.24382 3.36254 3.38625 3.44634 3.56745 3.98000 4.11571 4.30679 4.33563 4.39609 4.44252 4.56408 4.64550 4.77189 4.85135 4.87470 4.99768 5.02540 5.11480 5.14147 5.17090 5.29534 5.36460 5.40363 5.51500 5.62240 5.65556 5.79827 6.01133 6.14222 6.25407 6.33434 6.40057 6.51167 6.72099 7.17333 7.35959 7.52096 7.98794 8.45387 9.27773 10.71820 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.002677 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.764846 B =10458.298041 C =11379.575324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.139 4.139 5 C 0.130 3.870 6 C -0.160 4.160 7 C -0.084 4.084 8 C -0.074 4.074 9 C -0.154 4.154 10 C 0.075 3.925 11 H 0.108 0.892 12 C 0.540 3.460 13 O -0.460 6.460 14 N -1.057 6.057 15 S 2.569 3.431 16 O -0.945 6.945 17 O -0.961 6.961 18 C -0.427 4.427 19 C -0.611 4.611 20 H 0.065 0.935 21 C 0.037 3.963 22 N -0.888 5.888 23 Si 1.074 2.926 24 H -0.277 1.277 25 H -0.280 1.280 26 H -0.280 1.280 27 O -0.287 6.287 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.426 0.574 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.656 -7.537 -0.715 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C -0.105 4.105 4 C -0.157 4.157 5 C 0.085 3.915 6 C -0.161 4.161 7 C -0.102 4.102 8 C -0.111 4.111 9 C -0.192 4.192 10 C 0.014 3.986 11 H 0.126 0.874 12 C 0.323 3.677 13 O -0.327 6.327 14 N -0.818 5.818 15 S 2.670 3.330 16 O -0.936 6.936 17 O -0.952 6.952 18 C -0.563 4.563 19 C -0.651 4.651 20 H 0.084 0.916 21 C -0.172 4.172 22 N -0.521 5.521 23 Si 0.899 3.101 24 H -0.202 1.202 25 H -0.206 1.206 26 H -0.206 1.206 27 O -0.200 6.200 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.260 0.740 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.581 -6.214 -1.422 22.503 hybrid contribution -1.752 -1.242 0.339 2.175 sum -23.333 -7.457 -1.083 24.520 Atomic orbital electron populations 1.20711 0.91049 1.02610 1.02154 1.19789 0.96171 0.93015 1.03183 1.20823 0.92890 0.97861 0.98928 1.20648 0.93818 0.96602 1.04670 1.18742 0.81815 0.93591 0.97377 1.19803 0.94558 0.94079 1.07624 1.20727 0.92364 0.97795 0.99350 1.20482 0.93573 0.94202 1.02856 1.22263 0.96972 0.97929 1.01997 1.22310 0.89520 0.86002 1.00809 0.87426 1.19810 0.87719 0.82449 0.77749 1.90966 1.78997 1.27393 1.35391 1.55532 1.29851 1.28583 1.67786 1.06681 0.71332 0.78136 0.76809 1.93548 1.83423 1.85826 1.30775 1.93536 1.73248 1.45796 1.82605 1.27739 1.07966 1.12301 1.08296 1.21178 0.90411 1.20546 1.32917 0.91636 1.26009 1.07031 0.91685 0.92431 1.70793 1.11229 1.37804 1.32303 0.83488 0.72882 0.76885 0.76852 1.20173 1.20634 1.20591 1.86100 1.15510 1.34793 1.83583 0.91415 0.91758 0.91634 0.85342 0.84792 0.85817 0.89859 0.89283 0.89163 0.88654 0.74005 0.90540 0.89197 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.01 36.00 0.36 -0.27 16 2 C -0.12 -1.04 5.88 -104.65 -0.62 -1.65 16 3 C -0.09 -0.81 9.70 -39.66 -0.38 -1.19 16 4 C -0.14 -1.59 9.94 -39.34 -0.39 -1.98 16 5 C 0.13 1.62 6.47 -39.19 -0.25 1.37 16 6 C -0.16 -1.61 5.75 -104.44 -0.60 -2.21 16 7 C -0.08 -0.73 9.32 -39.53 -0.37 -1.10 16 8 C -0.07 -0.56 5.86 -27.82 -0.16 -0.73 16 9 C -0.15 -1.43 5.46 -26.49 -0.14 -1.57 16 10 C 0.08 0.92 3.21 -27.68 -0.09 0.83 16 11 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 12 C 0.54 8.80 6.93 -10.99 -0.08 8.72 16 13 O -0.46 -9.82 14.62 -22.90 -0.33 -10.15 16 14 N -1.06 -15.89 5.55 31.22 0.17 -15.72 16 15 S 2.57 54.26 5.03 -107.50 -0.54 53.72 16 16 O -0.95 -23.23 17.04 -64.79 -1.10 -24.34 16 17 O -0.96 -21.24 18.08 -57.54 -1.04 -22.28 16 18 C -0.43 -10.47 4.95 36.01 0.18 -10.29 16 19 C -0.61 -17.27 9.13 -34.44 -0.31 -17.59 16 20 H 0.07 1.82 7.71 -52.49 -0.40 1.41 16 21 C 0.04 1.05 5.46 -17.82 -0.10 0.95 16 22 N -0.89 -26.27 13.65 55.43 0.76 -25.51 16 23 Si 1.07 24.76 29.90 -169.99 -5.08 19.67 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 O -0.29 -4.22 9.47 -39.01 -0.37 -4.59 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.54 8.14 -51.92 -0.42 0.11 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.09 0.64 7.91 -51.93 -0.41 0.23 16 38 H 0.43 4.26 8.58 -34.47 -0.30 3.96 16 39 H 0.08 1.76 8.01 -51.93 -0.42 1.35 16 40 H 0.09 2.30 7.06 -51.93 -0.37 1.93 16 41 H 0.27 7.91 7.22 -40.82 -0.29 7.61 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -38.14 360.26 -10.28 -48.42 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.21 Total: 2.05 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -2.96 Total: -26.70 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.93 Total: -41.23 kcal Atomic # 8 Polarization: -58.51 SS G_CDS: -2.85 Total: -61.36 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.08 Total: 19.67 kcal Atomic # 16 Polarization: 54.26 SS G_CDS: -0.54 Total: 53.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.14 -10.28 -48.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.431 kcal (2) G-P(sol) polarization free energy of solvation -38.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds