Wall clock time and date at job start Tue Mar 31 2020 22:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38291 * 120.01365 * 2 1 4 4 C 1.37964 * 119.96291 * 180.11000 * 3 2 1 5 5 C 1.39149 * 120.21741 * 359.97438 * 4 3 2 6 6 C 1.38374 * 119.69066 * 359.82844 * 5 4 3 7 7 C 1.38110 * 120.01033 * 180.02562 * 2 1 3 8 8 C 1.50770 * 121.40350 * 180.50430 * 6 5 4 9 9 C 1.53066 * 109.70402 * 342.15443 * 8 6 5 10 10 C 1.53402 * 108.30397 * 48.15716 * 9 8 6 11 11 H 1.09003 * 109.67763 * 55.08977 * 10 9 8 12 12 C 1.50694 * 109.68505 * 175.60565 * 10 9 8 13 13 O 1.21286 * 120.00138 * 114.48017 * 12 10 9 14 14 N 1.34778 * 119.99995 * 294.48462 * 12 10 9 15 15 S 1.65601 * 119.99942 * 179.97438 * 14 12 10 16 16 O 1.42108 * 104.27527 * 308.92906 * 15 14 12 17 17 O 1.42098 * 104.27658 * 181.07092 * 15 14 12 18 18 C 1.81402 * 104.45063 * 64.99692 * 15 14 12 19 19 C 1.50700 * 109.47099 * 179.97438 * 18 15 14 20 20 H 1.08002 * 119.99770 * 0.02562 * 19 18 15 21 21 C 1.37871 * 120.00083 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00278 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47228 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46793 * 300.00001 * 23 21 19 26 26 H 1.48500 * 109.47000 * 60.00094 * 23 21 19 27 27 O 1.35842 * 118.50308 * 179.77872 * 5 4 3 28 28 H 1.09003 * 109.46916 * 90.00291 * 1 2 3 29 29 H 1.09000 * 109.47619 * 209.99966 * 1 2 3 30 30 H 1.09001 * 109.47295 * 330.00588 * 1 2 3 31 31 H 1.07998 * 120.01723 * 0.12639 * 3 2 1 32 32 H 1.08001 * 119.89268 * 179.97438 * 4 3 2 33 33 H 1.08002 * 119.83747 * 0.02562 * 7 2 1 34 34 H 1.08999 * 109.44111 * 102.19614 * 8 6 5 35 35 H 1.09008 * 109.43314 * 222.06802 * 8 6 5 36 36 H 1.09005 * 109.66882 * 288.47265 * 9 8 6 37 37 H 1.09000 * 109.72486 * 167.88049 * 9 8 6 38 38 H 0.96993 * 120.00358 * 0.02562 * 14 12 10 39 39 H 1.08994 * 109.47025 * 60.00385 * 18 15 14 40 40 H 1.08998 * 109.47443 * 300.00153 * 18 15 14 41 41 H 0.97005 * 119.99661 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1986 1.1975 0.0000 4 6 3.5783 1.1963 -0.0023 5 6 4.2775 -0.0068 -0.0041 6 6 3.5827 -1.2034 0.0001 7 6 2.1977 -1.1959 -0.0005 8 6 4.3010 -2.5289 0.0097 9 6 5.7544 -2.3315 -0.4281 10 6 6.3394 -1.1532 0.3609 11 1 6.2196 -1.3314 1.4295 12 6 7.8021 -0.9989 0.0329 13 8 8.1927 -0.0066 -0.5447 14 7 8.6762 -1.9637 0.3815 15 16 10.2835 -1.7945 0.0206 16 8 10.3002 -1.4777 -1.3647 17 8 10.8794 -2.9897 0.5060 18 6 10.8211 -0.3694 1.0058 19 6 12.2857 -0.1129 0.7605 20 1 12.8378 -0.7438 0.0796 21 6 12.9209 0.9272 1.4052 22 7 12.2488 1.6951 2.2348 23 14 14.7362 1.2457 1.1006 24 1 15.1763 2.4122 1.9072 25 1 15.5214 0.0477 1.4924 26 1 14.9537 1.5307 -0.3405 27 8 5.6354 0.0326 -0.0109 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6592 2.1331 0.0021 32 1 4.1174 2.1321 -0.0027 33 1 1.6552 -2.1298 -0.0014 34 1 4.2796 -2.9459 1.0165 35 1 3.8052 -3.2151 -0.6771 36 1 5.7896 -2.1126 -1.4954 37 1 6.3276 -3.2346 -0.2188 38 1 8.3639 -2.7575 0.8431 39 1 10.6615 -0.5781 2.0636 40 1 10.2447 0.5097 0.7179 41 1 11.3060 1.5300 2.3927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835410634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:39 Heat of formation + Delta-G solvation = -165.424486 kcal Electronic energy + Delta-G solvation = -27017.192283 eV Core-core repulsion = 22987.736178 eV Total energy + Delta-G solvation = -4029.456104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.25450 -40.91968 -38.74120 -38.24053 -37.22227 -36.12124 -35.84570 -35.16641 -33.20787 -31.63167 -30.70259 -28.73804 -26.80267 -25.58161 -24.61849 -23.56170 -23.00483 -21.16568 -20.65404 -19.58623 -19.26507 -19.18691 -18.48587 -17.53220 -17.43199 -16.86373 -16.51240 -16.25256 -15.90495 -15.68810 -15.43765 -15.35010 -15.05026 -14.88812 -14.65459 -14.37699 -14.23496 -13.95241 -13.88373 -13.76564 -13.49920 -13.36010 -13.25353 -13.20620 -12.67995 -12.60482 -12.37595 -12.29563 -12.12331 -11.97226 -11.95299 -11.55306 -11.50638 -11.32094 -11.09945 -10.77161 -9.75707 -9.02410 -8.95632 -6.73756 -0.96809 0.33269 0.38735 0.75932 1.21287 1.49353 1.57165 1.77743 2.08823 2.43094 2.59401 2.67828 2.87585 2.92768 3.22057 3.34288 3.64216 3.71620 3.75712 3.80814 4.01622 4.15071 4.22644 4.34118 4.37336 4.41047 4.51038 4.55842 4.71081 4.82581 4.90403 4.94591 5.00618 5.12789 5.16396 5.24870 5.33799 5.42977 5.49567 5.66940 5.80576 5.85023 6.20871 6.21761 6.38720 7.11203 8.48236 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.002677 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.764846 B =10458.298041 C =11379.575324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.164 4.164 5 C 0.096 3.904 6 C -0.162 4.162 7 C -0.086 4.086 8 C -0.069 4.069 9 C -0.152 4.152 10 C 0.077 3.923 11 H 0.144 0.856 12 C 0.538 3.462 13 O -0.517 6.517 14 N -1.032 6.032 15 S 2.617 3.383 16 O -0.980 6.980 17 O -0.966 6.966 18 C -0.451 4.451 19 C -0.637 4.637 20 H 0.064 0.936 21 C -0.014 4.014 22 N -0.911 5.911 23 Si 1.112 2.888 24 H -0.272 1.272 25 H -0.257 1.257 26 H -0.268 1.268 27 O -0.325 6.325 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.120 0.880 33 H 0.154 0.846 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.452 0.548 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.724 -10.165 -0.272 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.111 4.111 4 C -0.182 4.182 5 C 0.051 3.949 6 C -0.163 4.163 7 C -0.104 4.104 8 C -0.106 4.106 9 C -0.190 4.190 10 C 0.016 3.984 11 H 0.161 0.839 12 C 0.325 3.675 13 O -0.389 6.389 14 N -0.800 5.800 15 S 2.716 3.284 16 O -0.970 6.970 17 O -0.957 6.957 18 C -0.584 4.584 19 C -0.676 4.676 20 H 0.082 0.918 21 C -0.216 4.216 22 N -0.545 5.545 23 Si 0.930 3.070 24 H -0.197 1.197 25 H -0.181 1.181 26 H -0.193 1.193 27 O -0.239 6.239 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.138 0.862 33 H 0.172 0.828 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.145 0.855 38 H 0.292 0.708 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.667 -8.882 -0.946 25.297 hybrid contribution -1.294 -0.441 0.192 1.381 sum -24.962 -9.323 -0.754 26.656 Atomic orbital electron populations 1.20769 0.88863 1.03755 1.02982 1.20210 0.97794 0.92669 1.01475 1.21074 0.92025 0.99374 0.98656 1.20795 0.95002 0.96275 1.06153 1.19036 0.80965 0.95022 0.99847 1.20147 0.95360 0.94277 1.06525 1.21111 0.91915 0.99076 0.98281 1.20600 0.91781 0.93190 1.05011 1.22368 0.98747 0.97494 1.00402 1.22495 0.86005 0.86718 1.03173 0.83912 1.20743 0.89612 0.81170 0.76024 1.90945 1.80047 1.29751 1.38129 1.54846 1.27680 1.29733 1.67734 1.04929 0.72173 0.76193 0.75095 1.93506 1.84806 1.86037 1.32645 1.93522 1.74685 1.44965 1.82497 1.27868 1.06352 1.14301 1.09915 1.21628 0.92448 1.20724 1.32763 0.91831 1.27538 1.10972 0.91439 0.91690 1.70903 1.10929 1.38854 1.33862 0.83057 0.68506 0.77881 0.77566 1.19682 1.18127 1.19257 1.86027 1.17092 1.36271 1.84519 0.90608 0.90285 0.90913 0.83627 0.86158 0.82804 0.87128 0.86901 0.91062 0.85489 0.70754 0.89587 0.91065 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 71.23 0.71 -0.21 16 2 C -0.12 -1.80 5.88 -19.89 -0.12 -1.92 16 3 C -0.09 -1.68 9.70 22.22 0.22 -1.47 16 4 C -0.16 -3.92 9.94 22.42 0.22 -3.70 16 5 C 0.10 2.41 6.47 22.52 0.15 2.55 16 6 C -0.16 -2.92 5.75 -19.75 -0.11 -3.03 16 7 C -0.09 -1.23 9.32 22.30 0.21 -1.02 16 8 C -0.07 -0.78 5.86 29.89 0.18 -0.61 16 9 C -0.15 -2.43 5.46 30.75 0.17 -2.27 16 10 C 0.08 1.81 3.21 29.98 0.10 1.91 16 11 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 12 C 0.54 17.62 6.93 87.65 0.61 18.22 16 13 O -0.52 -23.19 14.62 24.16 0.35 -22.83 16 14 N -1.03 -29.96 5.55 -173.53 -0.96 -30.92 16 15 S 2.62 110.56 5.03 -56.49 -0.28 110.27 16 16 O -0.98 -48.84 17.04 -120.72 -2.06 -50.90 16 17 O -0.97 -41.51 18.08 -127.65 -2.31 -43.82 16 18 C -0.45 -22.82 4.95 71.24 0.35 -22.47 16 19 C -0.64 -36.81 9.13 25.60 0.23 -36.58 16 20 H 0.06 3.58 7.71 -2.91 -0.02 3.56 16 21 C -0.01 -0.82 5.46 84.65 0.46 -0.36 16 22 N -0.91 -55.37 13.65 21.45 0.29 -55.08 16 23 Si 1.11 49.71 29.90 68.60 2.05 51.76 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 O -0.32 -9.89 9.47 -72.88 -0.69 -10.58 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.47 8.09 -2.39 -0.02 0.45 16 30 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16 31 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 33 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.13 1.17 7.91 -2.39 -0.02 1.15 16 38 H 0.45 7.78 8.58 -96.76 -0.83 6.95 16 39 H 0.09 4.09 8.01 -2.39 -0.02 4.07 16 40 H 0.07 3.86 7.06 -2.39 -0.02 3.84 16 41 H 0.26 15.89 7.22 -92.70 -0.67 15.22 16 Total: -1.00 -87.08 360.26 0.10 -86.97 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.34 Total: 16.07 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 3.37 Total: -50.94 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -0.67 Total: -86.00 kcal Atomic # 8 Polarization: -123.43 SS G_CDS: -4.70 Total: -128.13 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.76 kcal Atomic # 16 Polarization: 110.56 SS G_CDS: -0.28 Total: 110.27 kcal Total: -87.08 0.10 -86.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.451 kcal (2) G-P(sol) polarization free energy of solvation -87.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds