Wall clock time and date at job start Tue Mar 31 2020 21:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00020 * 2 1 4 4 H 1.48505 * 109.47047 * 270.00296 * 3 2 1 5 5 H 1.48503 * 109.47149 * 29.99568 * 3 2 1 6 6 H 1.48499 * 109.47286 * 149.99937 * 3 2 1 7 7 C 1.37876 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99874 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00086 * 180.02562 * 7 2 1 10 10 S 1.81396 * 109.47324 * 180.02562 * 9 7 2 11 11 O 1.42097 * 110.54168 * 68.37008 * 10 9 7 12 12 O 1.42102 * 110.53855 * 291.62470 * 10 9 7 13 13 N 1.65590 * 104.45025 * 179.97438 * 10 9 7 14 14 C 1.34783 * 119.99805 * 65.00127 * 13 10 9 15 15 O 1.21277 * 120.00116 * 359.97438 * 14 13 10 16 16 C 1.50697 * 119.99922 * 179.97438 * 14 13 10 17 17 O 1.42901 * 109.47516 * 179.97438 * 16 14 13 18 18 C 1.42893 * 114.00493 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47451 * 179.97438 * 18 17 16 20 20 C 1.32564 * 120.00601 * 135.99695 * 19 18 17 21 21 C 1.47813 * 119.99292 * 8.07111 * 20 19 18 22 22 C 1.39532 * 120.14779 * 34.97599 * 21 20 19 23 23 C 1.37970 * 119.86028 * 179.97438 * 22 21 20 24 24 C 1.38347 * 120.14274 * 359.97438 * 23 22 21 25 25 C 1.38346 * 120.28318 * 0.02562 * 24 23 22 26 26 C 1.37969 * 120.14252 * 0.02562 * 25 24 23 27 27 H 0.97001 * 119.99923 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47101 * 59.99595 * 9 7 2 29 29 H 1.09005 * 109.46962 * 300.00126 * 9 7 2 30 30 H 0.97000 * 120.00326 * 244.99710 * 13 10 9 31 31 H 1.09002 * 109.47351 * 59.99810 * 16 14 13 32 32 H 1.09001 * 109.47336 * 300.00288 * 16 14 13 33 33 H 1.09008 * 109.47093 * 60.00277 * 18 17 16 34 34 H 1.08996 * 109.47074 * 300.00215 * 18 17 16 35 35 H 1.08008 * 119.99961 * 316.00291 * 19 18 17 36 36 H 1.07991 * 120.00643 * 188.06451 * 20 19 18 37 37 H 1.08007 * 120.07092 * 359.96221 * 22 21 20 38 38 H 1.08004 * 119.92934 * 180.02562 * 23 22 21 39 39 H 1.07996 * 119.85770 * 179.74341 * 24 23 22 40 40 H 1.07993 * 119.92693 * 179.97438 * 25 24 23 41 41 H 1.08003 * 120.07152 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 16 4.1163 -2.9042 -0.0016 11 8 3.8205 -3.5364 -1.2394 12 8 3.8197 -3.5391 1.2346 13 7 5.7658 -2.7592 -0.0015 14 6 6.3939 -2.2098 1.0569 15 8 5.7510 -1.8213 2.0090 16 6 7.8952 -2.0784 1.0572 17 8 8.3199 -1.4700 2.2786 18 6 9.7348 -1.2988 2.3814 19 6 10.0679 -0.6518 3.7010 20 6 11.0798 -1.1075 4.4261 21 6 11.9901 -2.1281 3.8652 22 6 12.3076 -2.1131 2.5065 23 6 13.1584 -3.0682 1.9893 24 6 13.6969 -4.0391 2.8148 25 6 13.3861 -4.0595 4.1628 26 6 12.5358 -3.1107 4.6922 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6807 0.8904 29 1 3.8752 -0.6795 -0.8895 30 1 6.2801 -3.0697 -0.7632 31 1 8.2059 -1.4588 0.2159 32 1 8.3465 -3.0664 0.9669 33 1 10.0841 -0.6636 1.5673 34 1 10.2238 -2.2709 2.3193 35 1 9.4822 0.1833 4.0561 36 1 11.2390 -0.7332 5.4265 37 1 11.8881 -1.3555 1.8611 38 1 13.4053 -3.0574 0.9379 39 1 14.3591 -4.7870 2.4043 40 1 13.8093 -4.8203 4.8018 41 1 12.2942 -3.1275 5.7447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835410744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:46 Heat of formation + Delta-G solvation = -103.109052 kcal Electronic energy + Delta-G solvation = -25972.088194 eV Core-core repulsion = 21945.334290 eV Total energy + Delta-G solvation = -4026.753904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.11239 -39.74897 -37.90035 -36.37899 -35.30719 -35.02019 -34.28621 -33.25262 -31.47604 -30.35271 -29.82112 -28.60911 -26.27619 -23.10697 -22.93039 -22.71870 -21.73692 -19.75877 -19.35401 -17.96960 -17.69634 -17.10020 -16.81387 -16.70842 -16.31832 -16.03527 -15.71034 -15.24470 -14.97393 -14.85713 -14.63382 -14.18117 -14.07408 -13.80426 -13.67262 -13.02272 -12.74185 -12.71008 -12.62133 -12.46651 -12.16826 -11.94484 -11.66920 -11.48051 -11.42220 -11.32341 -11.10846 -10.86224 -10.70542 -10.49377 -10.33319 -10.03464 -9.90130 -9.85462 -9.42518 -9.28922 -8.82641 -8.65551 -6.31214 -4.40656 0.58173 0.81875 0.99063 1.90349 2.20062 2.82056 3.15787 3.25283 3.27778 3.41952 3.61264 4.21830 4.23782 4.35218 4.43531 4.46666 4.55488 4.69117 4.69912 4.80480 4.82666 4.86982 4.92980 4.97304 5.05483 5.11303 5.11354 5.12031 5.38263 5.53873 5.63922 5.92914 5.95873 6.10764 6.16005 6.19895 6.29901 6.33603 6.57057 6.65845 6.87177 7.17122 7.62762 7.99877 8.58958 9.23450 10.79609 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.002326 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.359371 B =12037.447452 C =12875.905322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.090 3.910 3 Si 0.881 3.119 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.533 4.533 8 H 0.087 0.913 9 C -0.458 4.458 10 S 2.579 3.421 11 O -0.959 6.959 12 O -0.942 6.942 13 N -1.061 6.061 14 C 0.530 3.470 15 O -0.464 6.464 16 C 0.044 3.956 17 O -0.359 6.359 18 C 0.077 3.923 19 C -0.130 4.130 20 C -0.116 4.116 21 C -0.060 4.060 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.107 4.107 27 H 0.272 0.728 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.426 0.574 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.756 -2.994 3.094 31.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.116 4.116 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.572 4.572 8 H 0.105 0.895 9 C -0.594 4.594 10 S 2.680 3.320 11 O -0.949 6.949 12 O -0.932 6.932 13 N -0.823 5.823 14 C 0.314 3.686 15 O -0.333 6.333 16 C -0.038 4.038 17 O -0.277 6.277 18 C 0.001 3.999 19 C -0.148 4.148 20 C -0.134 4.134 21 C -0.060 4.060 22 C -0.136 4.136 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.138 4.138 26 C -0.125 4.125 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.261 0.739 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 29.556 -3.388 3.999 30.017 hybrid contribution 0.967 1.251 -0.671 1.718 sum 30.523 -2.137 3.328 30.778 Atomic orbital electron populations 1.69856 1.06265 1.27863 1.47410 1.24854 0.94752 0.99165 0.92878 0.86736 0.80753 0.82918 0.78902 1.19629 1.20475 1.18490 1.20020 0.84700 0.96412 1.56076 0.89477 1.28105 1.08645 1.16267 1.06406 1.06314 0.71420 0.80098 0.74202 1.93546 1.81085 1.75027 1.45262 1.93559 1.80770 1.74056 1.44809 1.55545 1.31287 1.69034 1.26389 1.20127 0.90653 0.76184 0.81593 1.90947 1.67213 1.43112 1.31987 1.22311 0.92192 0.99967 0.89339 1.88047 1.21942 1.81447 1.36302 1.22069 0.81636 0.99853 0.96303 1.23049 0.97503 0.99064 0.95216 1.21677 0.95993 0.96661 0.99104 1.19147 0.97532 0.95834 0.93447 1.21506 0.98182 0.99381 0.94501 1.21116 0.97449 0.95337 1.00000 1.21244 0.99999 0.98686 0.93903 1.21132 0.98202 0.98900 0.95538 1.21310 0.96808 0.94518 0.99847 0.91792 0.88417 0.90116 0.73949 0.89261 0.89383 0.91912 0.91103 0.85288 0.85278 0.85557 0.85823 0.86042 0.85897 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.96 55.43 0.77 -25.62 16 2 C 0.09 2.59 5.47 -17.82 -0.10 2.50 16 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.53 -15.18 9.68 -34.44 -0.33 -15.52 16 8 H 0.09 2.65 7.96 -52.49 -0.42 2.23 16 9 C -0.46 -10.64 4.71 36.01 0.17 -10.47 16 10 S 2.58 53.48 5.03 -107.50 -0.54 52.94 16 11 O -0.96 -21.00 18.08 -57.54 -1.04 -22.04 16 12 O -0.94 -23.09 17.04 -64.78 -1.10 -24.20 16 13 N -1.06 -15.21 5.60 31.22 0.17 -15.03 16 14 C 0.53 8.16 7.64 -10.98 -0.08 8.08 16 15 O -0.46 -9.57 14.60 -22.95 -0.34 -9.91 16 16 C 0.04 0.45 6.42 36.00 0.23 0.68 16 17 O -0.36 -4.58 9.86 -55.14 -0.54 -5.12 16 18 C 0.08 0.69 4.52 36.00 0.16 0.85 16 19 C -0.13 -1.15 9.84 -36.22 -0.36 -1.51 16 20 C -0.12 -0.92 9.81 -37.57 -0.37 -1.29 16 21 C -0.06 -0.48 5.19 -105.01 -0.54 -1.03 16 22 C -0.12 -0.85 7.41 -39.20 -0.29 -1.14 16 23 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 24 C -0.12 -0.77 10.04 -39.50 -0.40 -1.17 16 25 C -0.12 -0.81 10.03 -39.64 -0.40 -1.20 16 26 C -0.11 -0.80 9.79 -39.19 -0.38 -1.19 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.10 2.28 6.25 -51.93 -0.32 1.96 16 29 H 0.08 1.64 7.57 -51.92 -0.39 1.25 16 30 H 0.43 3.92 8.79 -34.47 -0.30 3.62 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.42 7.52 -51.92 -0.39 0.03 16 34 H 0.07 0.59 5.29 -51.93 -0.27 0.31 16 35 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 0.75 5.79 -52.48 -0.30 0.44 16 38 H 0.12 0.56 8.06 -52.48 -0.42 0.13 16 39 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -39.17 365.08 -9.83 -48.99 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.96 Total: 1.81 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -3.09 Total: -23.60 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.95 Total: -40.66 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -3.02 Total: -61.26 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 16 Polarization: 53.48 SS G_CDS: -0.54 Total: 52.94 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.17 -9.83 -48.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.114 kcal (2) G-P(sol) polarization free energy of solvation -39.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds