Wall clock time and date at job start Tue Mar 31 2020 21:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00020 * 2 1 4 4 H 1.48505 * 109.47047 * 270.00296 * 3 2 1 5 5 H 1.48503 * 109.47149 * 29.99568 * 3 2 1 6 6 H 1.48499 * 109.47286 * 149.99937 * 3 2 1 7 7 C 1.37876 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99874 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00086 * 180.02562 * 7 2 1 10 10 S 1.81396 * 109.47324 * 180.02562 * 9 7 2 11 11 O 1.42097 * 110.54168 * 68.37008 * 10 9 7 12 12 O 1.42102 * 110.53855 * 291.62470 * 10 9 7 13 13 N 1.65590 * 104.45025 * 179.97438 * 10 9 7 14 14 C 1.34783 * 119.99805 * 65.00127 * 13 10 9 15 15 O 1.21277 * 120.00116 * 359.97438 * 14 13 10 16 16 C 1.50697 * 119.99922 * 179.97438 * 14 13 10 17 17 O 1.42901 * 109.47516 * 179.97438 * 16 14 13 18 18 C 1.42893 * 114.00493 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47451 * 179.97438 * 18 17 16 20 20 C 1.32564 * 120.00601 * 135.99695 * 19 18 17 21 21 C 1.47813 * 119.99292 * 8.07111 * 20 19 18 22 22 C 1.39532 * 120.14779 * 34.97599 * 21 20 19 23 23 C 1.37970 * 119.86028 * 179.97438 * 22 21 20 24 24 C 1.38347 * 120.14274 * 359.97438 * 23 22 21 25 25 C 1.38346 * 120.28318 * 0.02562 * 24 23 22 26 26 C 1.37969 * 120.14252 * 0.02562 * 25 24 23 27 27 H 0.97001 * 119.99923 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47101 * 59.99595 * 9 7 2 29 29 H 1.09005 * 109.46962 * 300.00126 * 9 7 2 30 30 H 0.97000 * 120.00326 * 244.99710 * 13 10 9 31 31 H 1.09002 * 109.47351 * 59.99810 * 16 14 13 32 32 H 1.09001 * 109.47336 * 300.00288 * 16 14 13 33 33 H 1.09008 * 109.47093 * 60.00277 * 18 17 16 34 34 H 1.08996 * 109.47074 * 300.00215 * 18 17 16 35 35 H 1.08008 * 119.99961 * 316.00291 * 19 18 17 36 36 H 1.07991 * 120.00643 * 188.06451 * 20 19 18 37 37 H 1.08007 * 120.07092 * 359.96221 * 22 21 20 38 38 H 1.08004 * 119.92934 * 180.02562 * 23 22 21 39 39 H 1.07996 * 119.85770 * 179.74341 * 24 23 22 40 40 H 1.07993 * 119.92693 * 179.97438 * 25 24 23 41 41 H 1.08003 * 120.07152 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 16 4.1163 -2.9042 -0.0016 11 8 3.8205 -3.5364 -1.2394 12 8 3.8197 -3.5391 1.2346 13 7 5.7658 -2.7592 -0.0015 14 6 6.3939 -2.2098 1.0569 15 8 5.7510 -1.8213 2.0090 16 6 7.8952 -2.0784 1.0572 17 8 8.3199 -1.4700 2.2786 18 6 9.7348 -1.2988 2.3814 19 6 10.0679 -0.6518 3.7010 20 6 11.0798 -1.1075 4.4261 21 6 11.9901 -2.1281 3.8652 22 6 12.3076 -2.1131 2.5065 23 6 13.1584 -3.0682 1.9893 24 6 13.6969 -4.0391 2.8148 25 6 13.3861 -4.0595 4.1628 26 6 12.5358 -3.1107 4.6922 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6807 0.8904 29 1 3.8752 -0.6795 -0.8895 30 1 6.2801 -3.0697 -0.7632 31 1 8.2059 -1.4588 0.2159 32 1 8.3465 -3.0664 0.9669 33 1 10.0841 -0.6636 1.5673 34 1 10.2238 -2.2709 2.3193 35 1 9.4822 0.1833 4.0561 36 1 11.2390 -0.7332 5.4265 37 1 11.8881 -1.3555 1.8611 38 1 13.4053 -3.0574 0.9379 39 1 14.3591 -4.7870 2.4043 40 1 13.8093 -4.8203 4.8018 41 1 12.2942 -3.1275 5.7447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835410744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:45 Heat of formation + Delta-G solvation = -132.673837 kcal Electronic energy + Delta-G solvation = -25973.370219 eV Core-core repulsion = 21945.334290 eV Total energy + Delta-G solvation = -4028.035930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25335 -40.33278 -38.70764 -38.13273 -37.09979 -35.65308 -35.60677 -35.35144 -31.94872 -31.84418 -30.90652 -29.40813 -26.93644 -25.16178 -23.43399 -23.25483 -22.89475 -20.85514 -20.34635 -19.63365 -18.91660 -18.53709 -17.80179 -17.69540 -17.29789 -17.15278 -16.61101 -16.52404 -16.12468 -15.95949 -15.81305 -15.61043 -14.84062 -14.74425 -14.43881 -14.30883 -14.25467 -13.73977 -13.63665 -13.57169 -13.39619 -13.25614 -13.16366 -13.14196 -12.65694 -12.53475 -12.35122 -12.06617 -11.92818 -11.90218 -11.65605 -11.36030 -11.22550 -11.08294 -10.95046 -10.50660 -9.77507 -9.19024 -8.47605 -6.64268 -0.85517 0.05951 0.51433 1.00390 1.29214 1.29770 1.35331 1.45952 1.56457 2.25401 2.60313 2.75062 2.83842 2.96230 3.25955 3.40373 3.79934 3.92672 3.99049 4.09870 4.14756 4.22726 4.25448 4.28578 4.37107 4.37597 4.42934 4.47585 4.61162 4.63159 4.84302 5.07069 5.15658 5.17703 5.41636 5.42098 5.63783 5.66276 5.67478 5.78532 5.79777 6.08704 6.13285 6.39141 6.50065 7.04188 8.67440 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.002326 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.359371 B =12037.447452 C =12875.905322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.027 3.973 3 Si 0.950 3.050 4 H -0.246 1.246 5 H -0.276 1.276 6 H -0.245 1.245 7 C -0.556 4.556 8 H 0.044 0.956 9 C -0.474 4.474 10 S 2.613 3.387 11 O -0.973 6.973 12 O -0.986 6.986 13 N -1.035 6.035 14 C 0.526 3.474 15 O -0.523 6.523 16 C 0.048 3.952 17 O -0.398 6.398 18 C 0.078 3.922 19 C -0.152 4.152 20 C -0.110 4.110 21 C -0.080 4.080 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.130 4.130 26 C -0.122 4.122 27 H 0.277 0.723 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.452 0.548 31 H 0.138 0.862 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.629 -2.271 1.653 34.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.175 4.175 3 Si 0.770 3.230 4 H -0.169 1.169 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.595 4.595 8 H 0.062 0.938 9 C -0.608 4.608 10 S 2.711 3.289 11 O -0.963 6.963 12 O -0.976 6.976 13 N -0.804 5.804 14 C 0.314 3.686 15 O -0.395 6.395 16 C -0.033 4.033 17 O -0.318 6.318 18 C 0.003 3.997 19 C -0.170 4.170 20 C -0.128 4.128 21 C -0.080 4.080 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.148 4.148 26 C -0.140 4.140 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.134 0.866 30 H 0.293 0.707 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 33.449 -2.690 2.508 33.650 hybrid contribution -0.151 0.903 -0.197 0.936 sum 33.297 -1.787 2.312 33.425 Atomic orbital electron populations 1.70000 1.08339 1.29341 1.48877 1.25979 0.95739 1.03698 0.92129 0.85669 0.79689 0.77205 0.80449 1.16934 1.20136 1.16819 1.20293 0.87798 0.95159 1.56217 0.93756 1.28159 1.05323 1.19369 1.07918 1.04949 0.72650 0.78399 0.72864 1.93519 1.82479 1.74795 1.45551 1.93505 1.82665 1.74539 1.46880 1.54842 1.29032 1.68825 1.27707 1.21254 0.92957 0.74241 0.80195 1.90931 1.68702 1.45709 1.34137 1.22531 0.87567 1.02976 0.90218 1.87995 1.24132 1.81992 1.37673 1.22228 0.79789 1.00702 0.96991 1.23110 0.98101 0.99643 0.96138 1.21826 0.95561 0.96138 0.99276 1.19309 0.98191 0.96266 0.94230 1.21714 0.98349 0.99889 0.94266 1.21429 0.96956 0.94909 1.01150 1.21575 0.99997 0.99067 0.93845 1.21402 0.98076 0.99104 0.96212 1.21518 0.97250 0.94903 1.00359 0.91333 0.88341 0.86552 0.70682 0.84458 0.85717 0.89302 0.90457 0.85988 0.84474 0.84314 0.83720 0.84191 0.84431 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.96 21.45 0.30 -57.28 16 2 C 0.03 1.55 5.47 84.66 0.46 2.01 16 3 Si 0.95 42.47 27.47 68.60 1.88 44.35 16 4 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 7 C -0.56 -32.58 9.68 25.60 0.25 -32.33 16 8 H 0.04 2.87 7.96 -2.91 -0.02 2.84 16 9 C -0.47 -21.72 4.71 71.24 0.34 -21.39 16 10 S 2.61 107.30 5.03 -56.49 -0.28 107.02 16 11 O -0.97 -41.99 18.08 -127.65 -2.31 -44.29 16 12 O -0.99 -49.38 17.04 -120.72 -2.06 -51.44 16 13 N -1.04 -26.97 5.60 -173.53 -0.97 -27.95 16 14 C 0.53 14.92 7.64 87.65 0.67 15.59 16 15 O -0.52 -21.28 14.60 24.24 0.35 -20.92 16 16 C 0.05 0.78 6.42 71.23 0.46 1.24 16 17 O -0.40 -9.15 9.86 -129.94 -1.28 -10.43 16 18 C 0.08 1.17 4.52 71.23 0.32 1.49 16 19 C -0.15 -2.52 9.84 24.53 0.24 -2.28 16 20 C -0.11 -1.63 9.81 23.65 0.23 -1.40 16 21 C -0.08 -1.17 5.19 -20.12 -0.10 -1.28 16 22 C -0.12 -1.49 7.41 22.52 0.17 -1.33 16 23 C -0.13 -1.29 10.03 22.23 0.22 -1.07 16 24 C -0.13 -1.33 10.04 22.32 0.22 -1.10 16 25 C -0.13 -1.54 10.03 22.23 0.22 -1.31 16 26 C -0.12 -1.70 9.79 22.52 0.22 -1.48 16 27 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 28 H 0.10 4.54 6.25 -2.39 -0.01 4.52 16 29 H 0.12 4.45 7.57 -2.39 -0.02 4.43 16 30 H 0.45 6.52 8.79 -96.75 -0.85 5.67 16 31 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 0.83 7.52 -2.38 -0.02 0.81 16 34 H 0.08 1.05 5.29 -2.39 -0.01 1.04 16 35 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.14 1.66 8.06 -2.92 -0.02 1.64 16 37 H 0.14 1.20 5.79 -2.91 -0.02 1.19 16 38 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 39 H 0.14 0.86 8.06 -2.91 -0.02 0.83 16 40 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -90.09 365.08 -0.28 -90.37 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.16 Total: 15.20 kcal Atomic # 6 Polarization: -48.55 SS G_CDS: 3.92 Total: -44.63 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -0.67 Total: -85.22 kcal Atomic # 8 Polarization: -121.80 SS G_CDS: -5.29 Total: -127.09 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.35 kcal Atomic # 16 Polarization: 107.30 SS G_CDS: -0.28 Total: 107.02 kcal Total: -90.09 -0.28 -90.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.303 kcal (2) G-P(sol) polarization free energy of solvation -90.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds