Wall clock time and date at job start Tue Mar 31 2020 22:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00014 * 2 1 4 4 H 1.48497 * 109.47128 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46935 * 299.99697 * 3 2 1 6 6 H 1.48498 * 109.47450 * 59.99678 * 3 2 1 7 7 C 1.37879 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00113 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.46936 * 179.97438 * 9 7 2 11 11 O 1.42094 * 110.54459 * 68.37477 * 10 9 7 12 12 O 1.42101 * 110.54298 * 291.62341 * 10 9 7 13 13 N 1.65603 * 104.44745 * 180.02562 * 10 9 7 14 14 C 1.34776 * 120.00319 * 65.27098 * 13 10 9 15 15 O 1.21585 * 119.99680 * 359.73041 * 14 13 10 16 16 C 1.47534 * 119.99853 * 179.72184 * 14 13 10 17 17 C 1.39709 * 120.19231 * 0.02562 * 16 14 13 18 18 C 1.37789 * 119.90462 * 179.97438 * 17 16 14 19 19 C 1.38546 * 120.30067 * 0.02562 * 18 17 16 20 20 C 1.38048 * 120.39456 * 359.97438 * 19 18 17 21 21 C 1.38710 * 120.08133 * 359.73947 * 20 19 18 22 22 O 1.35655 * 120.15233 * 180.28150 * 21 20 19 23 23 C 1.42903 * 116.99752 * 6.05851 * 22 21 20 24 24 C 1.53784 * 113.61394 * 255.34616 * 23 22 21 25 25 C 1.53781 * 87.08285 * 220.02082 * 24 23 22 26 26 C 1.53781 * 87.08074 * 25.42953 * 25 24 23 27 27 H 0.97003 * 120.00063 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47321 * 59.99823 * 9 7 2 29 29 H 1.08996 * 109.46947 * 299.99641 * 9 7 2 30 30 H 0.97000 * 119.99587 * 244.99936 * 13 10 9 31 31 H 1.08000 * 120.04734 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.84634 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.80223 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.95978 * 180.02562 * 20 19 18 35 35 H 1.08997 * 112.85136 * 26.65204 * 23 22 21 36 36 H 1.09006 * 113.61102 * 334.56790 * 24 23 22 37 37 H 1.08996 * 113.61896 * 105.46944 * 24 23 22 38 38 H 1.09003 * 113.61207 * 270.88238 * 25 24 23 39 39 H 1.08998 * 113.61684 * 139.97913 * 25 24 23 40 40 H 1.09002 * 113.61531 * 220.02126 * 26 25 24 41 41 H 1.09006 * 113.69231 * 89.13026 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.1265 -3.9383 1.2374 12 8 3.1265 -3.9383 -1.2365 13 7 1.4793 -5.2341 -0.0002 14 6 0.6931 -5.5055 -1.0607 15 8 0.6779 -4.7520 -2.0148 16 6 -0.1490 -6.7169 -1.0638 17 6 -0.1348 -7.5852 0.0306 18 6 -0.9240 -8.7147 0.0216 19 6 -1.7320 -8.9942 -1.0686 20 6 -1.7556 -8.1448 -2.1565 21 6 -0.9721 -7.0002 -2.1620 22 8 -0.9985 -6.1615 -3.2279 23 6 -1.9529 -6.4450 -4.2530 24 6 -1.3338 -7.0655 -5.5166 25 6 -2.2934 -6.1783 -6.3271 26 6 -2.3061 -5.2253 -5.1203 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 1.4915 -5.8352 0.7610 31 1 0.4938 -7.3715 0.8824 32 1 -0.9121 -9.3855 0.8679 33 1 -2.3471 -9.8820 -1.0673 34 1 -2.3884 -8.3693 -3.0024 35 1 -2.8246 -6.9843 -3.8823 36 1 -0.2826 -6.8133 -5.6567 37 1 -1.5318 -8.1322 -5.6213 38 1 -3.2582 -6.6456 -6.5247 39 1 -1.8404 -5.7467 -7.2196 40 1 -3.2892 -4.8064 -4.9050 41 1 -1.5214 -4.4693 -5.1509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835411812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:23 Heat of formation + Delta-G solvation = -96.568472 kcal Electronic energy + Delta-G solvation = -27406.939329 eV Core-core repulsion = 23380.469046 eV Total energy + Delta-G solvation = -4026.470283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85554 -39.48018 -38.19627 -36.41597 -36.16499 -35.10379 -34.03956 -33.30584 -31.32169 -30.11533 -29.00170 -25.88540 -25.66522 -24.45814 -23.47650 -22.39429 -21.28298 -19.73208 -19.35221 -18.60849 -17.69670 -17.14830 -16.51407 -16.12408 -15.82988 -15.60596 -15.35337 -15.16817 -14.79398 -14.57702 -14.38953 -14.31936 -14.05672 -13.76071 -12.81087 -12.61472 -12.52265 -12.50083 -12.12444 -12.00562 -11.81298 -11.67770 -11.58196 -11.41103 -11.24563 -11.22912 -11.12712 -10.90155 -10.63133 -10.60491 -10.45265 -10.36868 -9.88545 -9.70451 -9.28984 -9.10508 -8.67403 -8.38079 -6.28835 -4.39648 0.66106 1.11119 1.19103 2.73968 3.07429 3.23394 3.24341 3.30836 3.37516 3.67278 4.24391 4.28197 4.32694 4.35412 4.49282 4.55205 4.62828 4.65645 4.75218 4.86451 5.00995 5.04162 5.16213 5.23738 5.28487 5.38688 5.45930 5.55364 5.59103 5.66339 5.76228 5.84940 5.93350 6.02713 6.14120 6.18726 6.48490 6.65508 6.84014 7.08194 7.34329 7.46823 7.78169 7.94667 8.61714 9.27253 10.83044 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.003774 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.295671 B = 7417.386812 C = 8957.476032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.071 0.929 9 C -0.404 4.404 10 S 2.556 3.444 11 O -0.970 6.970 12 O -0.952 6.952 13 N -1.060 6.060 14 C 0.577 3.423 15 O -0.465 6.465 16 C -0.176 4.176 17 C -0.043 4.043 18 C -0.170 4.170 19 C -0.051 4.051 20 C -0.224 4.224 21 C 0.194 3.806 22 O -0.263 6.263 23 C 0.044 3.956 24 C -0.155 4.155 25 C -0.140 4.140 26 C -0.130 4.130 27 H 0.268 0.732 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.420 0.580 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 -19.545 -5.024 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.573 4.573 8 H 0.089 0.911 9 C -0.541 4.541 10 S 2.658 3.342 11 O -0.961 6.961 12 O -0.942 6.942 13 N -0.821 5.821 14 C 0.364 3.636 15 O -0.336 6.336 16 C -0.182 4.182 17 C -0.061 4.061 18 C -0.189 4.189 19 C -0.069 4.069 20 C -0.242 4.242 21 C 0.145 3.855 22 O -0.173 6.173 23 C -0.012 4.012 24 C -0.192 4.192 25 C -0.178 4.178 26 C -0.167 4.167 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.255 0.745 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.257 -18.761 -5.826 21.309 hybrid contribution -0.462 0.400 0.531 0.810 sum -8.720 -18.361 -5.295 21.004 Atomic orbital electron populations 1.69975 1.06262 1.27559 1.47478 1.24921 0.95024 0.99553 0.93447 0.86287 0.80387 0.82053 0.78033 1.18948 1.20293 1.20335 1.20339 0.92772 0.88489 1.55696 0.91087 1.27607 1.09909 1.09141 1.07472 1.07054 0.77204 0.75902 0.74044 1.93512 1.71218 1.86032 1.45354 1.93528 1.70845 1.85191 1.44654 1.55424 1.56604 1.43752 1.26278 1.17841 0.78630 0.85616 0.81546 1.91023 1.62723 1.47752 1.32087 1.19351 1.04135 0.98996 0.95671 1.21229 0.96348 0.92643 0.95897 1.20968 0.99546 0.98627 0.99716 1.21127 0.95896 0.97748 0.92118 1.21246 1.04756 0.96416 1.01801 1.19073 0.91575 0.88436 0.86404 1.86510 1.54667 1.48726 1.27434 1.24370 0.91736 0.99434 0.85652 1.23511 1.01124 0.99588 0.95022 1.22653 0.99758 0.97851 0.97503 1.23185 1.03118 0.96826 0.93577 0.92258 0.88244 0.89695 0.74530 0.84674 0.85110 0.85329 0.84694 0.88315 0.88583 0.91051 0.89902 0.90272 0.90459 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 13.29 55.43 0.74 -24.80 16 2 C 0.08 2.19 5.46 -17.82 -0.10 2.09 16 3 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.53 -15.32 9.13 -34.44 -0.31 -15.64 16 8 H 0.07 1.99 7.71 -52.49 -0.40 1.59 16 9 C -0.40 -10.44 5.65 36.01 0.20 -10.24 16 10 S 2.56 58.06 5.03 -107.50 -0.54 57.52 16 11 O -0.97 -22.84 18.08 -57.54 -1.04 -23.88 16 12 O -0.95 -24.71 17.02 -64.82 -1.10 -25.81 16 13 N -1.06 -18.60 5.55 30.46 0.17 -18.43 16 14 C 0.58 10.80 7.50 -12.47 -0.09 10.71 16 15 O -0.47 -10.59 13.26 -24.11 -0.32 -10.91 16 16 C -0.18 -2.60 5.89 -104.84 -0.62 -3.22 16 17 C -0.04 -0.46 9.54 -39.20 -0.37 -0.84 16 18 C -0.17 -1.49 10.02 -39.63 -0.40 -1.88 16 19 C -0.05 -0.43 10.03 -39.54 -0.40 -0.82 16 20 C -0.22 -2.27 9.00 -39.48 -0.36 -2.63 16 21 C 0.19 2.72 6.69 -38.69 -0.26 2.46 16 22 O -0.26 -4.07 8.22 -40.54 -0.33 -4.41 16 23 C 0.04 0.49 3.63 -25.92 -0.09 0.40 16 24 C -0.15 -1.46 7.91 -25.92 -0.21 -1.66 16 25 C -0.14 -1.14 8.08 -25.92 -0.21 -1.35 16 26 C -0.13 -1.39 7.91 -25.92 -0.21 -1.59 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.10 2.70 7.20 -51.92 -0.37 2.33 16 29 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 30 H 0.42 5.43 6.82 -34.47 -0.24 5.19 16 31 H 0.14 1.13 6.40 -52.49 -0.34 0.79 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 34 H 0.14 1.05 5.95 -52.49 -0.31 0.74 16 35 H 0.10 0.86 6.05 -51.93 -0.31 0.54 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -37.83 359.31 -10.37 -48.20 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.92 Total: 4.83 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -3.41 Total: -24.22 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.91 Total: -43.23 kcal Atomic # 8 Polarization: -62.21 SS G_CDS: -2.80 Total: -65.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 58.06 SS G_CDS: -0.54 Total: 57.52 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.83 -10.37 -48.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.368 kcal (2) G-P(sol) polarization free energy of solvation -37.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds